uc001aoj.2_intron_6_0_chr1_7807842

CTACAGCTAGGAAGACAGAAGGCATTATTTTTGGAAAGAGTAACAACTATAAAACAAATATTTTGGAAGATGGAAGGCATTAATATAGCCAGGTTGCCTTTTTTTTTTTTCTTGGTTGGGAGTTTTATTGATTCTGGTTTTTAATTTCATTATATTCAGCAATGTAACATTAATCTTGTATTTTCTGTTTTTCCCCCAAGCTGACATGGATAGCCTTGAAGGTAATGATACACCCAAGCCCTCTCACAAA ...............................................................................................(((...............)))..((((((.....))))))................................................................................................................... .............................................................................................94......................................................150..................................................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189784	SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line)	TAX577744(Rovira) total RNA. (breast)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................TTTTTTTTTTTTCTTGGTTATG..................................................................................................................................	22		7.00	0.00	5.00	2.00	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTCTTG.................................................................................................................................	23		4.00	0.00	4.00	-	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTAGTT..................................................................................................................................	22		4.00	0.00	-	4.00	-	-	-	-	-
...................................................................................................TTTTTTTTTTTCTTGGTGGGG..................................................................................................................................	21		4.00	0.00	2.00	2.00	-	-	-	-	-
......................................................................................................TTTTTTTTCTTGGTTGGCAGG...............................................................................................................................	21		3.00	0.00	3.00	-	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTGGGG..................................................................................................................................	22		2.00	0.00	1.00	1.00	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTTGGC.................................................................................................................................	23		2.00	0.00	1.00	1.00	-	-	-	-	-
.............................................................................................TTGCCTTTTTTTTTTTTCGG.........................................................................................................................................	20		2.00	0.00	2.00	-	-	-	-	-	-
...................................................................................................TTTTTTTTTTTCTTGGTTTTTG.................................................................................................................................	22		2.00	0.00	-	2.00	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTACG..................................................................................................................................	22		2.00	0.00	2.00	-	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTGGTG.................................................................................................................................	23	3	1.33	0.67	-	1.33	-	-	-	-	-
....................................................................................................TTTTTTTTTTCTTGGTTCTTG.................................................................................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-
.............................................................................................TTGCCTTTTTTTTTTTTCCCCG.......................................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTGGGTGG...............................................................................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-
.............................................................................................TTGCCTTTTTTTTTTTTCGC.........................................................................................................................................	20		1.00	0.00	1.00	-	-	-	-	-	-
..............................................................................................TGCCTTTTTTTTTTTTCGG.........................................................................................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-
...................................................................................................TTTTTTTTTTTCTTGGTTCTTG.................................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-
.................................................................................................CTTTTTTTTTTTTCTTGGTGGTT..................................................................................................................................	23		1.00	0.00	-	-	-	-	-	1.00	-
.................................................................................................CTTTTTTTTTTTTCTTGGTTGC...................................................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTGTGG..................................................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTCATT.................................................................................................................................	23		1.00	0.00	-	-	-	-	-	-	1.00
......................................................................................................TTTTTTTTCTTGGTTGGTG.................................................................................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTGGGC.................................................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-
............AGACAGAAGGCATTATTTTGG.........................................................................................................................................................................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTTGGG.................................................................................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-
..............................................................................................TGCCTTTTTTTTTTTTCTTAAC......................................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-
.............................................................................................TTGCCTTTTTTTTTTTTCTTGGTTGAGA.................................................................................................................................	28		1.00	0.00	-	1.00	-	-	-	-	-
..............................................................................................................................ATTGATTCTGGTTTTTTCGT........................................................................................................	20		1.00	0.00	-	-	-	-	1.00	-	-
....................................................................................................TTTTTTTTTTCTTGGTGAAC..................................................................................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-
....................................................................................................TTTTTTTTTTCTTGGTTGTC..................................................................................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-
...................................................................................................TTTTTTTTTTTCTTGGTTGTGG.................................................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-
...................................................................................................TTTTTTTTTTTCTTGGTTGTC..................................................................................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTGG...................................................................................................................................	21	3	0.67	0.67	0.67	-	-	-	-	-	-
..............................................................................................TGCCTTTTTTTTTTTTCTTGG.......................................................................................................................................	21	4	0.50	0.50	0.50	-	-	-	-	-	-
.........................................................................................CAGGTTGCCTTTTTTTTTTT.............................................................................................................................................	20	3	0.33	0.33	0.33	-	-	-	-	-	-
...................................................................................................TTTTTTTTTTTCTTGGTTGG...................................................................................................................................	20	3	0.33	0.33	0.33	-	-	-	-	-	-
...................................................................................................TTTTTTTTTTTCTTGGTTGGTG.................................................................................................................................	22	3	0.33	0.33	-	0.33	-	-	-	-	-
...................................................................................................TTTTTTTTTTTCTTGGTTGGTTGG...............................................................................................................................	24	3	0.33	0.33	0.33	-	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTGGTTGG...............................................................................................................................	25	3	0.33	0.67	-	0.33	-	-	-	-	-
..............................................................................................TGCCTTTTTTTTTTTTCTTGGAACG...................................................................................................................................	25	4	0.25	0.50	0.25	-	-	-	-	-	-
..................................................................................................TTTTTTTTTTTTCTTGGTTG....................................................................................................................................	20	7	0.14	0.14	-	0.14	-	-	-	-	-
.....................................................................................................TTTTTTTTTCTTGGTTGG...................................................................................................................................	18	8	0.12	0.12	-	0.12	-	-	-	-	-
.....................................................................................................TTTTTTTTTCTTGGTTGGTG.................................................................................................................................	20	8	0.12	0.12	0.12	-	-	-	-	-	-
.....................................................................................................TTTTTTTTTCTTGGTTGGCGGG...............................................................................................................................	22	8	0.12	0.12	-	0.12	-	-	-	-	-

CTACAGCTAGGAAGACAGAAGGCATTATTTTTGGAAAGAGTAACAACTATAAAACAAATATTTTGGAAGATGGAAGGCATTAATATAGCCAGGTTGCCTTTTTTTTTTTTCTTGGTTGGGAGTTTTATTGATTCTGGTTTTTAATTTCATTATATTCAGCAATGTAACATTAATCTTGTATTTTCTGTTTTTCCCCCAAGCTGACATGGATAGCCTTGAAGGTAATGATACACCCAAGCCCTCTCACAAA
...............................................................................................(((...............)))..((((((.....))))))...................................................................................................................
.............................................................................................94......................................................150..................................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189784

SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)

TAX577744(Rovira)
total RNA. (breast)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

..................................................................................................TTTTTTTTTTTTCTTGGTTATG..................................................................................................................................

7.00

0.00

5.00

2.00

..................................................................................................TTTTTTTTTTTTCTTGGTTCTTG.................................................................................................................................

4.00

0.00

4.00

..................................................................................................TTTTTTTTTTTTCTTGGTAGTT..................................................................................................................................

4.00

0.00

4.00

...................................................................................................TTTTTTTTTTTCTTGGTGGGG..................................................................................................................................

4.00

0.00

2.00

......................................................................................................TTTTTTTTCTTGGTTGGCAGG...............................................................................................................................

3.00

0.00

3.00

..................................................................................................TTTTTTTTTTTTCTTGGTGGGG..................................................................................................................................

2.00

0.00

1.00

..................................................................................................TTTTTTTTTTTTCTTGGTTTGGC.................................................................................................................................

2.00

0.00

1.00

.............................................................................................TTGCCTTTTTTTTTTTTCGG.........................................................................................................................................

2.00

0.00

2.00

...................................................................................................TTTTTTTTTTTCTTGGTTTTTG.................................................................................................................................

2.00

0.00

2.00

..................................................................................................TTTTTTTTTTTTCTTGGTTACG..................................................................................................................................

2.00

0.00

2.00

..................................................................................................TTTTTTTTTTTTCTTGGTTGGTG.................................................................................................................................

1.33

0.67

1.33

....................................................................................................TTTTTTTTTTCTTGGTTCTTG.................................................................................................................................

1.00

0.00

1.00

.............................................................................................TTGCCTTTTTTTTTTTTCCCCG.......................................................................................................................................

1.00

0.00

1.00

..................................................................................................TTTTTTTTTTTTCTTGGTTGGGTGG...............................................................................................................................

1.00

0.00

1.00

.............................................................................................TTGCCTTTTTTTTTTTTCGC.........................................................................................................................................

1.00

0.00

1.00

..............................................................................................TGCCTTTTTTTTTTTTCGG.........................................................................................................................................

1.00

0.00

1.00

...................................................................................................TTTTTTTTTTTCTTGGTTCTTG.................................................................................................................................

1.00

0.00

1.00

.................................................................................................CTTTTTTTTTTTTCTTGGTGGTT..................................................................................................................................

1.00

0.00

1.00

.................................................................................................CTTTTTTTTTTTTCTTGGTTGC...................................................................................................................................

1.00

0.00

1.00

..................................................................................................TTTTTTTTTTTTCTTGGTGTGG..................................................................................................................................

1.00

0.00

1.00

..................................................................................................TTTTTTTTTTTTCTTGGTTCATT.................................................................................................................................

1.00

0.00

1.00

......................................................................................................TTTTTTTTCTTGGTTGGTG.................................................................................................................................

1.00

0.00

1.00

..................................................................................................TTTTTTTTTTTTCTTGGTTGGGC.................................................................................................................................

1.00

0.00

1.00

............AGACAGAAGGCATTATTTTGG.........................................................................................................................................................................................................................

1.00

0.00

1.00

..................................................................................................TTTTTTTTTTTTCTTGGTTTGGG.................................................................................................................................

1.00

0.00

1.00

..............................................................................................TGCCTTTTTTTTTTTTCTTAAC......................................................................................................................................

1.00

0.00

1.00

.............................................................................................TTGCCTTTTTTTTTTTTCTTGGTTGAGA.................................................................................................................................

1.00

0.00

1.00

..............................................................................................................................ATTGATTCTGGTTTTTTCGT........................................................................................................

1.00

0.00

1.00

....................................................................................................TTTTTTTTTTCTTGGTGAAC..................................................................................................................................

1.00

0.00

1.00

....................................................................................................TTTTTTTTTTCTTGGTTGTC..................................................................................................................................

1.00

0.00

1.00

...................................................................................................TTTTTTTTTTTCTTGGTTGTGG.................................................................................................................................

1.00

0.00

1.00

...................................................................................................TTTTTTTTTTTCTTGGTTGTC..................................................................................................................................

1.00

0.00

1.00

..................................................................................................TTTTTTTTTTTTCTTGGTTGG...................................................................................................................................

0.67

..............................................................................................TGCCTTTTTTTTTTTTCTTGG.......................................................................................................................................

0.50

.........................................................................................CAGGTTGCCTTTTTTTTTTT.............................................................................................................................................

0.33

...................................................................................................TTTTTTTTTTTCTTGGTTGG...................................................................................................................................

0.33

...................................................................................................TTTTTTTTTTTCTTGGTTGGTG.................................................................................................................................

0.33

...................................................................................................TTTTTTTTTTTCTTGGTTGGTTGG...............................................................................................................................

0.33

..................................................................................................TTTTTTTTTTTTCTTGGTTGGTTGG...............................................................................................................................

0.33

0.67

0.33

..............................................................................................TGCCTTTTTTTTTTTTCTTGGAACG...................................................................................................................................

0.25

0.50

0.25

..................................................................................................TTTTTTTTTTTTCTTGGTTG....................................................................................................................................

0.14

.....................................................................................................TTTTTTTTTCTTGGTTGG...................................................................................................................................

0.12

.....................................................................................................TTTTTTTTTCTTGGTTGGTG.................................................................................................................................

0.12

.....................................................................................................TTTTTTTTTCTTGGTTGGCGGG...............................................................................................................................

0.12