ID: uc001ans.2_intron_6_0_chr1_6601988_r.3p
GENE: (5)
chr1:6601938-6602187-


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(3)
BREAST
(11)
CELL-LINE
(1)
CERVIX
(1)
HELA
(2)
LIVER
(1)
OTHER
(2)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
ACATTGTGACCATGCCTGCACTGCGTTTCTCTGGACTCGTTTTTAAACAGCGATTGTCATCTTGAGGCTTCACTTCTAAAGTGCTGTGTGTGGTGGATTATGCCTGCGTGTCACATGAAATCTTTACTGTGTGATTATCCTTTCTACTGAGTAAAGCTAGTTAGGATTTTCTTTCTTTTTTCTTTTTTAAAAATTTGCAGTCTTCCCTGCGTTGACTATTTGGAATGTGATCTGGGACAGACAGAATTTA
..................................................................................((.(((((........)))))..))..(((((((............))))))).(((((..(((((......)).)))..)))))...................................................................................
..................................................................................83...........................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM532876(GSM532876)
G547T. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTCCAG..............................................................2397.000.0051.0032.002.005.007.00----------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTCC................................................................215.000.00--4.00--1.00---------------------
............................................................................................................................................................................................................................TGGAATGTGATCTGGGACAGACAGA.....2513.003.00--------3.00------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTTAAAATG........................................................283.000.00---2.00--1.00--------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTCCA...............................................................223.000.001.001.00--1.00----------------------
.......................................................................................................................................................................TTTCTTTCTTTTTTCTTTTTGGCT...........................................................242.000.00-----2.00---------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTTCCAG..........................................................262.000.00-2.00-------------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTCCAT..............................................................232.000.00-1.00-1.00-----------------------
..................................................................................................................................................................................................................GTTGACTATTTGGAATGTG.....................1911.001.00-------1.00-------------------
........................................................................................................................................................AAAGCTAGTTAGGATTTTCTTTCTT.........................................................................2511.001.00--1.00------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTCG...............................................................211.000.00------1.00--------------------
............................................................................................................................................................................................................................TGGAATGTGATCTGGGACAGACAG......2411.001.00----------------1.00----------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTTAAAG..........................................................261.000.00---1.00-----------------------
............................................................................................................................................................................TTCTTTTTTCTTTTTTAACATG........................................................221.000.00------1.00--------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTAATG...............................................................211.000.00-1.00-------------------------
...........................................................................................................................................................................................................................TTGGAATGTGATCTGGGA.............1811.001.00------------1.00--------------
.....................................................................................................................................................................................................................................ATCTGGGACAGACAGAATT..1911.001.00-------------1.00-------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCGGTC................................................................211.000.00--1.00------------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTCTCG...............................................................221.000.00-1.00-------------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTTTTGGAG...........................................................261.000.00--1.00------------------------
...............................................................................................................................................................................................................................AATGTGATCTGGGACAGACA.......2011.001.00-------------------1.00-------
..........................................................................................................................................................................CTTTCTTTTTTCTTTTTTAAAAT.........................................................231.000.00---1.00-----------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTAAG............................................................241.000.001.00--------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTGAGG.............................................................231.000.00-----1.00---------------------
.....................................................................................................................................................................................................................GACTATTTGGAATGTGATCTGGGACT...........261.000.00----------1.00----------------
.........................................................................................................................................................................TCTTTCTTTTTTCTTTTTTACAG..........................................................231.000.00--1.00------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTAATT...........................................................251.000.00--1.00------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTGGTC.............................................................231.000.00--1.00------------------------
............................................................................................................................................................................................................................TGGAATGTGATCTGGGACAGA.........2111.001.00-----------------1.00---------
.................................................................................................................................................................................................................................TGTGATCTGGGACAGACT.......181.000.00--------------------1.00------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTCCG..............................................................221.000.001.00--------------------------
.........................................................................................................................................................................................................................ATTTGGAATGTGATCTGGGACA...........2211.001.00-----------1.00---------------
...............................................................................................................................................................................................................TGCGTTGACTATTTGGAATGTGATCTGGGACA...........3211.001.00-------1.00-------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTTCTG...........................................................251.000.00-1.00-------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTTCGC...........................................................251.000.00-----1.00---------------------
..........................................................................................................................................................................................................................TTTGGAATGTGATCTGGGACAGACA.......2511.001.00------------------1.00--------
..........................................................................................................................................................................................................TTCCCTGCGTTGACTATTTGGAATGT......................2611.001.00-------1.00-------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTTTTTCACT..........................................................271.000.00--1.00------------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTCCAA..............................................................231.000.001.00--------------------------
..................................................................................................................................................................................................TTGCAGTCTTCCCTGGACT.....................................191.000.00----------------------1.00----
.........................................................................................................................................................AAGCTAGTTAGGATTTTCTTTCTTTTCT.....................................................................281.000.00-----1.00---------------------
..........................................................................................................................................................................CTTTCTTTTTTCTTTTTTAATAG.........................................................231.000.001.00--------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCGGTA................................................................201.000.00--1.00------------------------
..........................................................................................................................................................AGCTAGTTAGGATTTTCTTTCTTTCTTC....................................................................281.000.00--1.00------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTATTG...........................................................251.000.001.00--------------------------
...............................................................................................................................................................................................................TGCGTTGACTATTTGGAATGTGATCT.................2611.001.00----------1.00----------------
..........................................................................................................................................................AGCTAGTTAGGATTTTCTT.............................................................................1911.001.00-----------1.00---------------
.......................................................................................................................................................................TTTCTTTCTTTTTTCTTTTTTAAAATAG.......................................................281.000.00------1.00--------------------
........................................................................................................................................................................TTCTTTCTTTTTTCTTTTTGGTC...........................................................231.000.00--1.00------------------------
.......................................................................................................................................................................TTTCTTTCTTTTTTCGGC.................................................................181.000.00--1.00------------------------
......................................................................................................................................................................TTTTCTTTCTTTTTTCTTTTTTCTCG..........................................................261.000.00--1.00------------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTTTTTAAAAATCCG.....................................................321.000.00-1.00-------------------------
........................................................................................................................................................................TTCTTTCTTTTTTCTTGACG..............................................................201.000.00--1.00------------------------
.......................................................................................................................................................................TTTCTTTCTTTTTTCTTTGGC..............................................................211.000.00--1.00------------------------
..........................................................................................................................................................................CTTTCTTTTTTCTTTTTTAACAG.........................................................231.000.001.00--------------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTGGTC...............................................................221.000.00--1.00------------------------
.....................................................................................................................................................................ATTTTCTTTCTTTTTTCTTTTTCAAT...........................................................261.000.00-1.00-------------------------
...........................................................................................................................................................................................................TCCCTGCGTTGACTATTTGGAATGTG.....................2611.001.00-------1.00-------------------
.......................................................................................GTGTGGTGGATTATGTTT.................................................................................................................................................181.000.00---------1.00-----------------
.............................................................................................................................................................................................................................GGAATGTGATCTGGGA.............1620.500.50-----------------------0.50---
....................................................................................................................................................................................................................................GATCTGGGACAGACAGA.....1730.330.33------------------------0.33--
......................................................................................................................................................................................................................................TCTGGGACAGACAGAATT..1830.330.33-------------------------0.33-
.............................................................................................................................................................................................................................GGAATGTGATCTGGG..............1570.140.14--------------------------0.14

Antisense strand
ACATTGTGACCATGCCTGCACTGCGTTTCTCTGGACTCGTTTTTAAACAGCGATTGTCATCTTGAGGCTTCACTTCTAAAGTGCTGTGTGTGGTGGATTATGCCTGCGTGTCACATGAAATCTTTACTGTGTGATTATCCTTTCTACTGAGTAAAGCTAGTTAGGATTTTCTTTCTTTTTTCTTTTTTAAAAATTTGCAGTCTTCCCTGCGTTGACTATTTGGAATGTGATCTGGGACAGACAGAATTTA
..................................................................................((.(((((........)))))..))..(((((((............))))))).(((((..(((((......)).)))..)))))...................................................................................
..................................................................................83...........................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM532876(GSM532876)
G547T. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................AAAGTGCTGTGTGTGGTA........................................................................................................................................................... 181.000.00---------1.00-----------------
...................................................................................................................................................................GGATTTTCTTTCTTTGGGA.................................................................... 191.000.00---------------1.00-----------
.............................................................................AAAGTGCTGTGTGTGGTAT.......................................................................................................................................................... 191.000.00---------1.00-----------------
.........................................................................................................................................TCCTTTCTACTGAGTACA............................................................................................... 181.000.00---------------------1.00-----