ID: uc001amq.2_intron_6_0_chr1_6399650_r.5p
GENE: (2)
chr1:6409609-6409858-


(1)
B-CELL
(1)
BRAIN
(14)
BREAST
(11)
CELL-LINE
(14)
CERVIX
(4)
HEART
(1)
OTHER
(47)
SKIN
(1)
TESTES

Sense strand
AGGAGGCAGGCGCCATCATCAGCACCCGGCATTGCAACAGCCAGAACGGGGTAAGGGTCTGGGCCCCATACCTCTGGGCCCTGGAGGCCGCACCAGTGTGAGTTCAGGACAGGAGTTCCCCGGGGAGCCAGGCCTGCAGCCTTCCCTCCCCTTGTGCACTGGGCCTTGGGAACTGTGGGAGAAGTGGCCCAAGTATTTCTGCACCGGACCCTCAGAGCTATGCTTGGTTTTGGCCTCAGCCAGGAGGTGT
.................................................................................................................(((((((.((((((..((((.....))))...))))))....((.....))...)))))))............................................................................
.................................................................................................................114........................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577590(Rovira)
total RNA. (breast)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040032(GSM532917)
G603N. (cervix)
GSM532877(GSM532877)
G691N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
GSM532887(GSM532887)
G761N. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
GSM532881(GSM532881)
G696N. (cervix)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040022(GSM532907)
G575N. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
GSM532879(GSM532879)
G659N. (cervix)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................CCCGGGGAGCCAGGCGGG..................................................................................................................1845.000.005.002.003.003.002.002.002.001.00-2.001.001.002.00-1.00--1.00--1.001.001.001.00----1.001.00--1.001.00----1.00-1.001.00--1.00-1.00-1.001.00----1.001.00--------------------------------------
......................................................................................................................CCCGGGGAGCCAGGCGGGC.................................................................................................................1913.000.001.00-1.00-1.00-1.00----1.00---2.001.00-------1.00----------1.001.001.00---------------1.00----------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGGG..................................................................................................................1986.880.250.121.250.12----0.250.120.12------0.750.50--0.250.12-0.12--0.120.120.120.120.12--------------------------------0.25--0.120.120.120.120.250.12----0.120.12-0.120.120.12-0.12-0.120.12-0.12---0.120.12
...................................................................................................................TTCCCCGGGGAGCCA........................................................................................................................1526.506.50---0.50---------2.00----1.50--------------------------------1.00-------0.500.50-0.50-------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGGGC.................................................................................................................2084.750.25-0.750.12-0.12--0.120.12--------0.12-0.12-0.120.25-0.120.12------------------------------0.380.38------0.120.250.120.120.12--0.120.12-0.12---0.12---0.12-0.12--0.12-0.120.12---
......................................................................................................................CCCGGGGAGCCAGGCGAG..................................................................................................................182.000.00-----1.00------------------------1.00---------------------------------------------------------------
......................................................................................................................CCCGGGGAGCCAGGCCGG..................................................................................................................181.000.00--------------1.00-------------------------------------------------------------------------------
....................................................................................................................TCCCCGGGGAGCCAGGCGGG..................................................................................................................201.000.00-------------------------1.00--------------------------------------------------------------------
......................................................................................................................CCCGGGGAGCCAGGCGGTC.................................................................................................................191.000.00----------1.00-----------------------------------------------------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGTGG...................................................................................................................181.000.001.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTTGGTTTTGGCCTCAGCCAGGAGGTG.3011.001.00--------------------------------------------------1.00-------------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGTGGG..................................................................................................................191.000.00--------------------------1.00-------------------------------------------------------------------
.....................GCACCCGGCATTGCAACA...................................................................................................................................................................................................................1811.001.00---------------------------------------------1.00------------------------------------------------
.......................................................................................................................................................................................................................................GGCCTCAGCCAGGAGTGGT191.000.00-------------------------------------------1.00--------------------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCCGGA.................................................................................................................201.000.00-------1.00--------------------------------------------------------------------------------------
......................................................................................................................................................................TGGGAACTGTGGGAGTCTG.................................................................191.000.00----------------------------------1.00-----------------------------------------------------------
....................................................................................................................TCCCCGGGGAGCCAGGCGG...................................................................................................................191.000.00-1.00--------------------------------------------------------------------------------------------
......................................................................................................TTCAGGACAGGAGTTCCCCGGGGAGCCAGGC.....................................................................................................................3111.001.00-------------------------------1.00--------------------------------------------------------------
......................................................................................................................CCCGGGGAGCCAGGCGCG..................................................................................................................181.000.00------------------------------------------1.00---------------------------------------------------
..............ATCATCAGCACCCGGCAT..........................................................................................................................................................................................................................1820.500.50----------------------------------------------------------0.50-----------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGGGG.................................................................................................................2080.500.25-------0.12------------------------------------------------0.120.12---------------0.12--------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGGGA.................................................................................................................2080.380.25-------0.12------------------------------------------------0.120.12------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGGGT.................................................................................................................2080.250.25----------------0.12--------------------------------------------------------------------------0.12--
.....................................................................................................................CCCCGGGGAGCCAGGC.....................................................................................................................1680.250.25-0.12-0.12------------------------------------------------------------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGGA..................................................................................................................1980.120.25-------0.12--------------------------------------------------------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGTG..................................................................................................................1980.120.25---------------------------------------------------------------------0.12------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGGTA.................................................................................................................2080.120.25-------0.12--------------------------------------------------------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGTGA.................................................................................................................2080.120.25---------------------------------------------------------------------------0.12------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGGT..................................................................................................................1980.120.25-----------------------0.12----------------------------------------------------------------------
.....................................................................................................................CCCCGGGGAGCCAGGCGTGC.................................................................................................................2080.120.25----------------------------------------------------------------0.12-----------------------------

Antisense strand
AGGAGGCAGGCGCCATCATCAGCACCCGGCATTGCAACAGCCAGAACGGGGTAAGGGTCTGGGCCCCATACCTCTGGGCCCTGGAGGCCGCACCAGTGTGAGTTCAGGACAGGAGTTCCCCGGGGAGCCAGGCCTGCAGCCTTCCCTCCCCTTGTGCACTGGGCCTTGGGAACTGTGGGAGAAGTGGCCCAAGTATTTCTGCACCGGACCCTCAGAGCTATGCTTGGTTTTGGCCTCAGCCAGGAGGTGT
.................................................................................................................(((((((.((((((..((((.....))))...))))))....((.....))...)))))))............................................................................
.................................................................................................................114........................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577590(Rovira)
total RNA. (breast)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040032(GSM532917)
G603N. (cervix)
GSM532877(GSM532877)
G691N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
GSM532887(GSM532887)
G761N. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
GSM532881(GSM532881)
G696N. (cervix)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040018(GSM532903)
G701N. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040022(GSM532907)
G575N. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
GSM532879(GSM532879)
G659N. (cervix)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................ACAAGGGGAGGGAAGGC............................................................................................... 1712.002.00--------2.00-------------------------------------------------------------------------------------
..........................................................................................................................................CCAGTGCACAAGGGGAGGGAAGGC........................................................................................ 2411.001.00----------------------------------------------------1.00-----------------------------------------
..........................................................................................................................................CACAAGGGGAGGGAAGGC.............................................................................................. 1811.001.00-------------------1.00--------------------------------------------------------------------------
...................................................................................................................................GCCTGCAGCCTTCCCTG...................................................................................................... 171.000.00-----------------------------------------------1.00----------------------------------------------
.............................................................................................................................................................................................................GGACCCTCAGAGCTATA............................ 171.000.00---------------------------1.00------------------------------------------------------------------
...................................................................................................................................GCCTGCAGCCTTCCCGCG..................................................................................................... 181.000.00---------------------------------------1.00------------------------------------------------------
...........CCGGGTGCTGATGATGGC............................................................................................................................................................................................................................. 1820.500.50-------------------------------------------------------------0.50--------------------------------
..........................................................................................................................................CAAGGGGAGGGAAGGC................................................................................................ 1630.330.33-------------------0.33--------------------------------------------------------------------------