ID: uc001amh.2_intron_2_0_chr1_6269600_f
GENE: (3)
chr1:6269550-6270033+


(1)
B-CELL
(2)
BRAIN
(8)
BREAST
(9)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(7)
HEART
(2)
HELA
(5)
LIVER
(2)
OTHER
(11)
SKIN
(1)
UTERUS

Sense strand
GCGCCGCCGAGGAGGAGGACGCTATCCACGCCCTCTTCGGCAGCATGCAGGTGAGGGGTGGGGGTTGGGGGATAAACGACCCAGCCGGGACCTGGTGACACAGGGCTGGTCCCTTGCCCTTGTGGATTTCCAGTGTAGTGGGGCAGCAGGCCTTGCACCAAGCACTTTCCTGGAGTTGCTAGGAGAGCTGGGAGGGGAAACCAGGGCCTGCCGCAGGCTGGTGGTGGGGGTGTGAGGTGGTCAGGAAAGACTTCCCTGGGGAGGTGACATTTAAGGTGACGGGACCCAAGCCCTCACCAGGCAGCAGATGCAGGGCTGGTAGGTTGGAGAGATACCTAGTGTAACCAGCAGGTGGCTGGGGTCCGGGGGGTAGGCATGGTGGGAGGTGGCAGGGCTGGGGCGCAAATCAAGAGCATGCTCGCCATCTCTCCCAGGACAGGCTGGCAGAGAGGAAAGCGCTGCTGCTGCAGGCTGTGCAGAGGTG
..............................................................................................................................................................................................................................................................................................................................................(((.......(((((.....))))).......))).......(((.((((((((((.((((....((...........))..)))))))))))))))))...................................................
..............................................................................................................................................................................................................................................................................................................................................335................................................................................................434................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189782SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR040008(GSM532893)
G727N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR038860(GSM458543)
MM426. (cell line)
SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCAGT.................................................21117.001.00--2.002.00--3.00-1.00----1.001.00------------1.00---------1.00--1.001.00--1.00--1.00--1.00---
.......................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGGGGCGCAAAGCGG..........................................................................1911.000.00-5.00--2.00-----------1.00---------1.00--1.00-------------1.00----------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTCGCCATCTCTCCCAGT.................................................2215.001.00--1.00--------1.001.00--------1.00-------------1.00------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTCGCCATCTCTCCCATT.................................................222.000.00---2.00--------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCGCCATCTCTCCCAGT.................................................202.000.00-------2.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCAGTA................................................2212.001.00--1.00-----------------------------------1.00---------------
...................................................................................................................................................................................TAGGAGAGCTGGGAGTACA..............................................................................................................................................................................................................................................................................................191.000.00------------------------------------------1.00-----------
...........................................................................................................................................................................................................................................GGTGGTCAGGAAAGAGGGC......................................................................................................................................................................................................................................191.000.00-----------------------1.00------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................TGGTGGGAGGTGGCAGGGCTGGGGCCT.................................................................................271.000.00---------------------------------------1.00--------------
...........................................................................................................................................................................................................................GGTGGTGGGGGTGTGGGGT......................................................................................................................................................................................................................................................191.000.00--------------------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCCGT.................................................211.000.00---------------1.00--------------------------------------
..............................CCCTCTTCGGCAGCACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------1.00--------
.....GCCGAGGAGGAGGACGCTATCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------------------1.00-----------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCAGTTT...............................................2311.001.00-----------1.00------------------------------------------
.......................................................................................................................................................................................................................................................................................................................AGGGCTGGTAGGTTGTC............................................................................................................................................................171.000.00------------------------------1.00-----------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCAGTAA...............................................2311.001.00----------------------------------1.00-------------------
.........................................................................................................................................................................................AGCTGGGAGGGGAAATTTT........................................................................................................................................................................................................................................................................................191.000.00------------------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................................................AGGGCTGGTAGGTTGCCGA..........................................................................................................................................................191.000.00-----1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCTAT.................................................211.000.00-----------------1.00------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTGGCTGGGGTCCGGGGGGAAGA..............................................................................................................231.000.001.00-----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTCGCCATCTCTCCCAG..................................................2111.001.00-----1.00------------------------------------------------
..GCCGCCGAGGAGGAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---------1.00--------------------------------------------
......................................................................................................................................................................................................................AGGCTGGTGGTGGGGGAATG..........................................................................................................................................................................................................................................................201.000.00-------------------------------------------------1.00----
........................................................................................................................................................................................................................................................................................................................................................................................TGGTGGGAGGTGGCAGGGCTGGGGCGCAA...............................................................................2911.001.00----------------------------------------------1.00-------
............................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCTCGCCATCTCTCCCAGA.................................................231.000.00-----1.00------------------------------------------------
.....................................................................................................................CCTTGTGGATTTCCATTAG............................................................................................................................................................................................................................................................................................................................................................191.000.001.00-----------------------------------------------------
...............................................................................................................................................................................................................................GTGGGGGTGTGAGGTGGTCAGGACGCC..........................................................................................................................................................................................................................................271.000.00--------------------------------1.00---------------------
.................................................................................................................................................................................................................................GGGGGTGTGAGGTGGTTG.................................................................................................................................................................................................................................................181.000.001.00-----------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCAG..................................................2011.001.00----------------------------1.00-------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGGCAGGGCTGGGGCAACT...............................................................................241.000.00----------1.00-------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCAGA.................................................2111.001.00------------1.00-----------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACAGGCTGGCAGGGT..................................181.000.00----------1.00-------------------------------------------
..........................................................................................................................................................................................................................TGGTGGTGGGGGTGTGGGGT......................................................................................................................................................................................................................................................201.000.00----------------------1.00-------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCGCCATCTCTCCCAGC.................................................2111.001.00-------------------------1.00----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGGAAAGCGCTGCTG....................1911.001.00--------1.00---------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGGCTGGCAGAGA..................................1730.330.33----------------------------------------------------0.33-

Antisense strand
GCGCCGCCGAGGAGGAGGACGCTATCCACGCCCTCTTCGGCAGCATGCAGGTGAGGGGTGGGGGTTGGGGGATAAACGACCCAGCCGGGACCTGGTGACACAGGGCTGGTCCCTTGCCCTTGTGGATTTCCAGTGTAGTGGGGCAGCAGGCCTTGCACCAAGCACTTTCCTGGAGTTGCTAGGAGAGCTGGGAGGGGAAACCAGGGCCTGCCGCAGGCTGGTGGTGGGGGTGTGAGGTGGTCAGGAAAGACTTCCCTGGGGAGGTGACATTTAAGGTGACGGGACCCAAGCCCTCACCAGGCAGCAGATGCAGGGCTGGTAGGTTGGAGAGATACCTAGTGTAACCAGCAGGTGGCTGGGGTCCGGGGGGTAGGCATGGTGGGAGGTGGCAGGGCTGGGGCGCAAATCAAGAGCATGCTCGCCATCTCTCCCAGGACAGGCTGGCAGAGAGGAAAGCGCTGCTGCTGCAGGCTGTGCAGAGGTG
..............................................................................................................................................................................................................................................................................................................................................(((.......(((((.....))))).......))).......(((.((((((((((.((((....((...........))..)))))))))))))))))...................................................
..............................................................................................................................................................................................................................................................................................................................................335................................................................................................434................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189782SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR040008(GSM532893)
G727N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR038860(GSM458543)
MM426. (cell line)
SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACAGGCTGGCAGAGTATC............................... 211.000.00---------------------------------1.00--------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCGCCATCTCTCCCAGAG................................................ 211.000.00-------------------1.00----------------------------------
........................................................................................................................................................TTGCACCAAGCACTTAG........................................................................................................................................................................................................................................................................................................................... 171.000.001.00-----------------------------------------------------
...........................................................................................................................................................................................................GGGCCTGCCGCAGGCTGGTGGTGGGGGTGTCGG........................................................................................................................................................................................................................................................ 331.000.00-------------------------------1.00----------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTCTCCCAGGACTCGG........................................... 201.000.001.00-----------------------------------------------------
......CCGAGGAGGAGGACGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00------------------------------------------------1.00-----
................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCATCTCTCCTGG.................................................. 181.000.00----1.00-------------------------------------------------
....CGCCGAGGAGGAGGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00------------------------1.00-----------------------------
..................................................................................................................................................................................................................CACCACCAGCCTGCGG.................................................................................................................................................................................................................................................................. 1620.500.50---------------------------------------------------0.50--
...CCTCCTCCTCGGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1590.110.11-----------------------------------------------------0.11