ID: uc001amg.2_intron_2_0_chr1_6267572_f.3p
GENE: (3)
chr1:6268741-6268990+


(7)
B-CELL
(1)
BRAIN
(4)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(7)
HEART
(1)
HELA
(1)
KIDNEY
(2)
LIVER
(2)
OTHER
(1)
RRP40.ip
(7)
SKIN
(1)
XRN.ip

Sense strand
CCAGCCTCTGAGCCGCAGTGCCCTCCTCTGTAAAGTGGGTATATCAGAGCGCCAAGTGCCTGGATTACAGGAAAGGGCTGCGTTTAGCTGCGCACCCGGCCACGGCTGGGACAAACACGCGCAGTGACACGCGGCGGCTGCGGTTCCCGCGCTGGCCGCGGTCGGGCTCTGGCGCTCCTGAGCCCGCGCTCGGCCCGCAGGACGTGGAGACCACGTACTTCTGCAACACGTGCGGACAGCCCCTATGCGC
....................................................................................................................................................(((..(((((.((((((((((.((....)).))))))).)))))))))))....................................................
................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR040011(GSM532896)
G529T. (cervix)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR191531(GSM715641)
134genomic small RNA (size selected RNA from . (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................................................................TGAGCCCGCGCTCGGCCCGCAGT.................................................23111.005.004.00--1.00-3.00----------1.00-------------1.00--------------1.00-
..................................................................................................................................................................................TGAGCCCGCGCTCGGCCCGCAG..................................................2215.005.002.00--2.00-----1.00-------------------------------------
.....................................................................................................................................................CGCTGGCCGCGGTCGGGCTCA................................................................................2114.001.00--1.00----3.00---------------------------------------
..................................................................................................................................................................................TGAGCCCGCGCTCGGCCCGCAGATC...............................................2513.005.00--------3.00--------------------------------------
......................................................................................................................................................GCTGGCCGCGGTCGGGCTCTGG..............................................................................2213.003.001.00----1.00---------------------------1.00-------------
...................................................................................................................................................CGCGCTGGCCGCGGTCGGGC...................................................................................2013.003.00----1.00------1.00-------------------------------1.00---
..................................................................................................................................................................................TGAGCCCGCGCTCGGCCCGCAGTT................................................2412.005.00---------1.00---1.00---------------------------------
..................................................................................................................................................................................TGAGCCCGCGCTCGGCCCGCAGA.................................................2312.005.00----------------------------------1.001.00-----------
..................................................................................................................................................................................TGAGCCCGCGCTCGGCCCGCAGTA................................................2411.005.00--------------------------------1.00--------------
.....................................................................................................................................................CGCTGGCCGCGGTCGGGCTC.................................................................................2011.001.00-----------1.00-----------------------------------
.................................................................................................................................................................................CTGAGCCCGCGCTCGGCCCGCAG..................................................2311.001.001.00----------------------------------------------
..............................................................................................................................................................CGGTCGGGCTCTGGCGCGA.........................................................................191.000.00------------------------1.00----------------------
..................................................................................................................................................CCGCGCTGGCCGCGGTCGGGCTC.................................................................................2311.001.00------1.00----------------------------------------
......................................................................................................................................................GCTGGCCGCGGTCGGGCTCT................................................................................2011.001.00--1.00--------------------------------------------
...................................................................................................................................................................................................................CACGTACTTCTGCAACACGTGCG................2311.001.00----------------------1.00------------------------
....................................................................................................................................................GCGCTGGCCGCGGTCGGGC...................................................................................1911.001.00-----------------------1.00-----------------------
.....................................................................................................................................................CGCTGGCCGCGGTCGGGCTCTGGAG............................................................................251.000.00-----------------------------------------1.00-----
..............................................................................................................................................................................................................GAGACCACGTACTTCTG...........................1711.001.00---------------1.00-------------------------------
......................................................................................................................................................GCTGGCCGCGGTCGGGCTCTGGCGCTCC........................................................................2811.001.00---1.00-------------------------------------------
.................................................................................................................................................CCCGCGCTGGCCGCGCGG.......................................................................................181.000.00----------------------------------------1.00------
.....................................................................................................................................................................................................CAGGACGTGGAGACCTA....................................171.000.00-----------------1.00-----------------------------
...........................................................................................................GGGACAAACACGCGCAGTGACA.........................................................................................................................2211.001.00--------------------------------------1.00--------
...................................................................................................................................................CGCGCTGGCCGCGGTCGGGCTCATT..............................................................................251.000.00------1.00----------------------------------------
...................................................................................................................................................CGCGCTGGCCGCGGTCGGA....................................................................................191.000.00----1.00------------------------------------------
....................................................................................................................................................GCGCTGGCCGCGGTCGGGCT..................................................................................2011.001.00--------------------1.00--------------------------
.....................................................................................................................................................CGCTGGCCGCGGTCGGGC...................................................................................1811.001.00---------------------1.00-------------------------
......................................................................................................................................................GCTGGCCGCGGTCGGGCTCTGAA.............................................................................231.000.00--1.00--------------------------------------------
.....................................................................................................................................................CGCTGGCCGCGGTCGGGCTCTT...............................................................................221.000.00------1.00----------------------------------------
....................................................................................................................................................GCGCTGGCCGCGGTCGGGCTCAAG..............................................................................241.000.00-------------------1.00---------------------------
.....................................................................................................................................................CGCTGGCCGCGGTCGGGCT..................................................................................1911.001.00---------1.00-------------------------------------
...................................................................................................................................................CGCGCTGGCCGCGGTCGGGCAA.................................................................................2211.003.00----1.00------------------------------------------
....................................................................AGGAAAGGGCTGCGTTTAG...................................................................................................................................................................1911.001.00-------------------------1.00---------------------
...............................................................................................................................................................GGTCGGGCTCTGGCGCTCC........................................................................1911.001.00-------------1.00---------------------------------
....................................................................................................................................................GCGCTGGCCGCGGTCGGGCTCAA...............................................................................231.000.00-------------------------------------1.00---------
.....................................................................................................................................................CGCTGGCCGCGGTCGGGCTAAA...............................................................................2211.001.00--------------------------1.00--------------------
.....................................................................................................................................................CGCTGGCCGCGGTCGGGCTCTGA..............................................................................231.000.00------------------1.00----------------------------
...................................................................................................................................................CGCGCTGGCCGCGGTCGGGCTCAA...............................................................................241.000.00--1.00--------------------------------------------
....................................................................................................................................................GCGCTGGCCGCGGTCGGGCTCC................................................................................221.000.00---------------------------------------1.00-------
.............................................................................................................................................................................................................GGAGACCACGTACTTCTGCAACACGTGCG................2911.001.00----------------------------1.00------------------
....................................................................................................................................................................................................GCAGGACGTGGAGACCG.....................................171.000.00-----------------------------1.00-----------------
...................................................................................................................................................CGCGCTGGCCGCGGTCGGGCTT.................................................................................221.000.00----1.00------------------------------------------
..................................................................................................................................................................................TGAGCCCGCGCTCGGCCCGCAAA.................................................231.000.00-1.00---------------------------------------------
................................................................................................................................ACGCGGCGGCTGCGGGGG........................................................................................................181.000.00-------------------------------1.00---------------
.................................................................................................................................CGCGGCGGCTGCGGTGGC.......................................................................................................181.000.00------------------------------------------1.00----
.................................................................................................................................................CCCGCGCTGGCCGCGGTCGGGCTCTG...............................................................................2611.001.00----------1.00------------------------------------
........................................................................AAGGGCTGCGTTTAG...................................................................................................................................................................1520.500.50----------------------------------------------0.50

Antisense strand
CCAGCCTCTGAGCCGCAGTGCCCTCCTCTGTAAAGTGGGTATATCAGAGCGCCAAGTGCCTGGATTACAGGAAAGGGCTGCGTTTAGCTGCGCACCCGGCCACGGCTGGGACAAACACGCGCAGTGACACGCGGCGGCTGCGGTTCCCGCGCTGGCCGCGGTCGGGCTCTGGCGCTCCTGAGCCCGCGCTCGGCCCGCAGGACGTGGAGACCACGTACTTCTGCAACACGTGCGGACAGCCCCTATGCGC
....................................................................................................................................................(((..(((((.((((((((((.((....)).))))))).)))))))))))....................................................
................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR040011(GSM532896)
G529T. (cervix)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR191531(GSM715641)
134genomic small RNA (size selected RNA from . (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................GCCTGGATTACAGGAATAA.............................................................................................................................................................................. 191.000.00----------1.00------------------------------------
.....................................................................................................................................................................................GCCCGCGCTCGGCCCGCCGG................................................. 201.000.00--------------------------------------------1.00--
..............CACTTTACAGAGGAGGGCACTGC..................................................................................................................................................................................................................... 2311.001.00------------------------------------1.00----------
...............................................................................................................................CACGCGGCGGCTGCGGCT......................................................................................................... 181.000.00------------1.00----------------------------------
.........................................................GCCTGGATTACAGGAATAGT............................................................................................................................................................................. 201.000.00-1.00---------------------------------------------
............................................................................................................................................................CGCGGTCGGGCTCTGGCGCTCCTGCGT................................................................... 271.000.00---------------------------1.00-------------------
.........................................................GCCTGGATTACAGGAATAGG............................................................................................................................................................................. 201.000.00-1.00---------------------------------------------
.............CGCAGTGCCCTCCTCTCGT.......................................................................................................................................................................................................................... 191.000.00--------------1.00--------------------------------
................................................................................................................................ACGCGGCGGCTGCGGTCT........................................................................................................ 181.000.00------------1.00----------------------------------
...............................................................................................................................................TTCCCGCGCTGGCCGCTG......................................................................................... 181.000.00-1.00---------------------------------------------