ID: uc001amd.2_intron_2_0_chr1_6257817_r.5p
GENE: (1)
chr1:6259422-6259671-


(12)
B-CELL 		(2)
BRAIN 		(15)
BREAST 		(26)
CELL-LINE 		(6)
CERVIX 		(3)
HEART 		(10)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(21)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTAGTTCGCTCACCTCCCTTTCTAACTCCGCTGCCGCCATGGCTCCTGTGGTTAGTATGGCTCCGCGTGAGGCCTCGGCTCCAGGGGAGGCACGTGGGCCTCGCCGAGCCCGGCATCTACCCAGGCTCGCTGGGGACGGCGCCCTGCAGCGTCCTGCTGGGGTGGGCTGGCAGGTCGGCCGGAGCGGGCCAGAGCCCCTGCCGATCCCAGCACGTTGTAGGCGGAGGAGGCCGCGGCCCGAGGCTCGTGA
..................................................................((((.(((..(((((..((.(((((......))))).))))))).))).)).))..................................................................................................................................
................................................................65...........................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040034(GSM532919)
G001N. (cervix)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
.................CTTTCTAACTCCGCTGCCGCCATGGC...............................................................................................................................................................................................................26111.0011.00--------------2.00----2.001.00---2.002.00---------------------------1.00-----------------------------------------1.00------
.....................................................................AGGCCTCGGCTCCAGGGGA..................................................................................................................................................................1915.005.00--1.001.00------------------------1.00---1.00--------------1.00------------------------------------------------------
.............................................CTGTGGTTAGTATGGCTCCG.........................................................................................................................................................................................2015.005.00-------3.00------------------------------------1.00-------------1.00-------------------------------------------
...............................................GTGGTTAGTATGGCTCCG.........................................................................................................................................................................................1815.005.00-------------2.00----1.00---------------------1.00-----------------------------1.00-------------------------------
.......................................TGGCTCCTGTGGTTAGTATGG..............................................................................................................................................................................................2114.004.001.00-------1.00-1.00----------------------------------------------1.00--------------------------------------------
...............CCCTTTCTAACTCCGCTGCCGCCATGGCT..............................................................................................................................................................................................................2914.004.00-----------2.00----2.00-------------------------------------------------------------------------------------
.............................GCTGCCGCCATGGCTCCTGTTCT......................................................................................................................................................................................................234.000.00---------4.00--------------------------------------------------------------------------------------------
.......................................TGGCTCCTGTGGTTAGTATGGC.............................................................................................................................................................................................2214.004.00--------2.00-------------------1.00-------------------------1.00-----------------------------------------------
.........................................................................CTCGGCTCCAGGGGAGGC...............................................................................................................................................................1814.004.00---------------------2.002.00-------------------------------------------------------------------------------
........................................GGCTCCTGTGGTTAGTATGG..............................................................................................................................................................................................2013.003.003.00-----------------------------------------------------------------------------------------------------
.........................................GCTCCTGTGGTTAGTATGGC.............................................................................................................................................................................................2013.003.003.00-----------------------------------------------------------------------------------------------------
...........................................................................CGGCTCCAGGGGAGGCACG............................................................................................................................................................1913.003.00-----------------------1.00-------------------------------------------------------------------1.001.00---------
..............................................TGTGGTTAGTATGGCTCCG.........................................................................................................................................................................................1913.003.00-------2.00-----------------------------------------------------------------------1.00----------------------
......................................................GTATGGCTCCGCGTGAGGC.................................................................................................................................................................................1913.003.00------------3.00-----------------------------------------------------------------------------------------
...........................................TCCTGTGGTTAGTATGGCT............................................................................................................................................................................................1913.003.00------2.00--------------------------------------------1.00--------------------------------------------------
.........................................GCTCCTGTGGTTAGTATGG..............................................................................................................................................................................................1913.003.003.00-----------------------------------------------------------------------------------------------------
................................GCCGCCATGGCTCCTGTGGTTAGTA.................................................................................................................................................................................................2513.003.00-3.00----------------------------------------------------------------------------------------------------
................................GCCGCCATGGCTCCTGTGGTTAGTATGGC.............................................................................................................................................................................................2912.002.00-2.00----------------------------------------------------------------------------------------------------
.............................................CTGTGGTTAGTATGGC.............................................................................................................................................................................................1612.002.00-----1.00----------------------------------------------------------------------------------------1.00-------
.........................................................................CTCGGCTCCAGGGGAGGCACG............................................................................................................................................................2112.002.00------------------1.00--------------------------------------------------------------------------1.00--------
............................................CCTGTGGTTAGTATGGCTCCGC........................................................................................................................................................................................2212.002.00-----------------------------------------1.00----------------------------------1.00-------------------------
..AGTTCGCTCACCTCCCTTTCCAAC................................................................................................................................................................................................................................242.000.00----2.00-------------------------------------------------------------------------------------------------
.....................................CATGGCTCCTGTGGTTAGTATGGC.............................................................................................................................................................................................2412.002.00-1.00----------------------------------1.00-----------------------------------------------------------------
.................CTTTCTAACTCCGCTGCCGCCATGGCT..............................................................................................................................................................................................................2712.002.00-----------1.00----1.00-------------------------------------------------------------------------------------
..........................................CTCCTGTGGTTAGTATGGCT............................................................................................................................................................................................2012.002.00--------------------------------------------------------1.00--1.00------------------------------------------
.....................................................................AGGCCTCGGCTCCAGGGGAGGC...............................................................................................................................................................2212.002.00------------------------------2.00-----------------------------------------------------------------------
.....................................CATGGCTCCTGTGGTTAGTATGGCTCCGCG.......................................................................................................................................................................................3012.002.00----------1.00-------------------------------1.00-----------------------------------------------------------
...........................................TCCTGTGGTTAGTATGGC.............................................................................................................................................................................................1812.002.00-----1.001.00-----------------------------------------------------------------------------------------------
..........................................................................TCGGCTCCAGGGGAGGCAC.............................................................................................................................................................1912.002.00-----------------2.00------------------------------------------------------------------------------------
.........................................................................CTCGGCTCCAGGGGAGG................................................................................................................................................................1712.002.00-----------------------------1.00-----------------------------------------------1.00------------------------
...............................................GTGGTTAGTATGGCTCCGCGTGAGGC.................................................................................................................................................................................2612.002.00-----1.00-------------------------------------------------------------------1.00----------------------------
................................................................................................................................................................GGTGGGCTGGCAGGTC..........................................................................1641.501.50----------------------------------1.50-------------------------------------------------------------------
..........................................CTCCTGTGGTTAGTATGGCTCC..........................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------1.00--------------------------
........................................................................................................CGAGCCCGGCATCTACGG................................................................................................................................181.000.00----------------------------------------------------------------------------------1.00-------------------
............................................CCTGTGGTTAGTATGGCTCC..........................................................................................................................................................................................2011.001.00-------------------------------------------1.00----------------------------------------------------------
..........................................CTCCTGTGGTTAGTATGG..............................................................................................................................................................................................1811.001.00-----------------------------------1.00------------------------------------------------------------------
..................TTTCTAACTCCGCTGCCG......................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------1.00-----------------
...............................................GTGGTTAGTATGGCTCCCC........................................................................................................................................................................................191.000.001.00-----------------------------------------------------------------------------------------------------
........................................GGCTCCTGTGGTTAGTATGGCT............................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------1.00------------------------------
.....................CTAACTCCGCTGCCGCCATGGCTCCTGT.........................................................................................................................................................................................................2811.001.00--------------------------------------------------------------------------------------1.00---------------
..................................CGCCATGGCTCCTGTGAC......................................................................................................................................................................................................181.000.00--------------------------------------------------1.00---------------------------------------------------
............................................................................................................................................................CTGGGGTGGGCTGGCAAA............................................................................181.000.00------------------------------------------------1.00-----------------------------------------------------
.....................................................AGTATGGCTCCGCGTGAGGC.................................................................................................................................................................................2011.001.00---------------------------------1.00--------------------------------------------------------------------
........................................................ATGGCTCCGCGTGAGGCCTC..............................................................................................................................................................................2011.001.00-----------------------1.00------------------------------------------------------------------------------
..............................................TGTGGTTAGTATGGCTCCGC........................................................................................................................................................................................2011.001.00---------------1.00--------------------------------------------------------------------------------------
..................................................GTTAGTATGGCTCCGC........................................................................................................................................................................................1611.001.00---1.00--------------------------------------------------------------------------------------------------
.........................................................................CTCGGCTCCAGGGGAGGCA..............................................................................................................................................................1911.001.00------------------------------------------------------------------1.00-----------------------------------
....................................................................GAGGCCTCGGCTCCAGGG....................................................................................................................................................................1811.001.00---------------------------------------------1.00--------------------------------------------------------
.........................CTCCGCTGCCGCCATGGCTCCTGTG........................................................................................................................................................................................................2511.001.00--1.00---------------------------------------------------------------------------------------------------
................................................TGGTTAGTATGGCTCCG.........................................................................................................................................................................................1711.001.00-1.00----------------------------------------------------------------------------------------------------
............................CGCTGCCGCCATGGCTCCTGTGG.......................................................................................................................................................................................................2311.001.00-------------------------------------------------1.00----------------------------------------------------
.................................................................CGTGAGGCCTCGGCTCCAGG.....................................................................................................................................................................2011.001.00-------------1.00----------------------------------------------------------------------------------------
............................................................CTCCGCGTGAGGCCTCGGCTC.........................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------1.00------------------
......................................ATGGCTCCTGTGGTTAGTA.................................................................................................................................................................................................1911.001.00------1.00-----------------------------------------------------------------------------------------------
........................ACTCCGCTGCCGCCATGGCTCCTG..........................................................................................................................................................................................................2411.001.00----1.00-------------------------------------------------------------------------------------------------
..............................CTGCCGCCATGGCTCCTGTGG.......................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------1.00-----------
..............................CTGCCGCCATGGCTCCTGTGT.......................................................................................................................................................................................................211.000.00---------------------------1.00--------------------------------------------------------------------------
..................TTTCTAACTCCGCTGCCGCC....................................................................................................................................................................................................................2011.001.00----------------------------------------------1.00-------------------------------------------------------
...........................................................GCTCCGCGTGAGGCCTCGGCTCCAGGGGAGGC...............................................................................................................................................................3211.001.00-1.00----------------------------------------------------------------------------------------------------
............................................................CTCCGCGTGAGGCCTCGG............................................................................................................................................................................1811.001.00------------------------------------------------------------------------------1.00-----------------------
...............................................GTGGTTAGTATGGCTCCGC........................................................................................................................................................................................1911.001.00--1.00---------------------------------------------------------------------------------------------------
..........................................................GGCTCCGCGTGAGGCCTCGGCTCCAGGGGA..................................................................................................................................................................3011.001.00---------------1.00--------------------------------------------------------------------------------------
......................................ATGGCTCCTGTGGTTAGTATGGC.............................................................................................................................................................................................2311.001.00---------------------------------------------------------------1.00--------------------------------------
...............CCCTTTCTAACTCCGCTGCCGCCATG.................................................................................................................................................................................................................2611.001.00--------------1.00---------------------------------------------------------------------------------------
...........................................................GCTCCGCGTGAGGCCTCGGCTC.........................................................................................................................................................................2211.001.00-----------------------------1.00------------------------------------------------------------------------
...................................................................................................................................................................................................................ACGTTGTAGGCGGAGGAG.....................1811.001.00-1.00----------------------------------------------------------------------------------------------------
........................................................ATGGCTCCGCGTGAGGC.................................................................................................................................................................................1711.001.00--------------------------------------1.00---------------------------------------------------------------
...........................................................................................ACGTGGGCCTCGCCGAGC.............................................................................................................................................1811.001.00---------------------------1.00--------------------------------------------------------------------------
.....................CTAACTCCGCTGCCGCCATGG................................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------------------1.00--------------
..........................TCCGCTGCCGCCATGGCTC.............................................................................................................................................................................................................1911.001.00--------------------------1.00---------------------------------------------------------------------------
...........................................................................CGGCTCCAGGGGAGGGC..............................................................................................................................................................171.000.00-------------------------------------------------------------------1.00----------------------------------
......................................ATGGCTCCTGTGGTTAGTATGGCT............................................................................................................................................................................................2411.001.00-----------------------------------------------------------------------------------------1.00------------
.......................................TGGCTCCTGTGGTTAGTA.................................................................................................................................................................................................1811.001.00-------------------------------1.00----------------------------------------------------------------------
.....................................................................AGGCCTCGGCTCCAGGGG...................................................................................................................................................................1811.001.00---1.00--------------------------------------------------------------------------------------------------
................CCTTTCTAACTCCGCTGCCGCCATGG................................................................................................................................................................................................................2611.001.00--------------------1.00---------------------------------------------------------------------------------
.......................AACTCCGCTGCCGCCATGGC...............................................................................................................................................................................................................2011.001.00---1.00--------------------------------------------------------------------------------------------------
..................................................................GTGAGGCCTCGGCTCCAGG.....................................................................................................................................................................1911.001.00--1.00---------------------------------------------------------------------------------------------------
............................................CCTGTGGTTAGTATGGC.............................................................................................................................................................................................1711.001.00-----1.00------------------------------------------------------------------------------------------------
.....................................CATGGCTCCTGTGGTTAG...................................................................................................................................................................................................1811.001.00------1.00-----------------------------------------------------------------------------------------------
.......................AACTCCGCTGCCGCCA...................................................................................................................................................................................................................1611.001.00---------------------------------------------------------------------1.00--------------------------------
...........................................................................................ACGTGGGCCTCGCCGAG..............................................................................................................................................1711.001.00----------1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................GTAGGCGGAGGAGGCCGCGGCCCGAGGCCG....301.000.00----1.00-------------------------------------------------------------------------------------------------
.......................AACTCCGCTGCCGCCATGGCTCCTGT.........................................................................................................................................................................................................2611.001.00---------------------------------------1.00--------------------------------------------------------------
...........................................TCCTGTGGTTAGTATGGCTCC..........................................................................................................................................................................................2111.001.00-1.00----------------------------------------------------------------------------------------------------
...........................CCGCTGCCGCCATGGCTC.............................................................................................................................................................................................................1811.001.00--------------------------------------------------------------------1.00---------------------------------
................................................................................................................................................................................................................................AGGAGGCCGCGGCCCGAGGCTCG...2311.001.00------------------------------------------------------------------------1.00-----------------------------
....................TCTAACTCCGCTGCCGCCAT..................................................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------------1.00----------------
.........................................................TGGCTCCGCGTGAGGCCT...............................................................................................................................................................................1811.001.00-------------------------------1.00----------------------------------------------------------------------
............CCTCCCTTTCTAACTCCGC...........................................................................................................................................................................................................................1911.001.00------------------------------------------------------------1.00-----------------------------------------
..........................TCCGCTGCCGCCATGGCTCCTGCGG.......................................................................................................................................................................................................251.000.00----1.00-------------------------------------------------------------------------------------------------
...............................................GTGGTTAGTATGGCTCCGCG.......................................................................................................................................................................................2011.001.00--1.00---------------------------------------------------------------------------------------------------
................................GCCGCCATGGCTCCTGTGG.......................................................................................................................................................................................................1911.001.00---1.00--------------------------------------------------------------------------------------------------
.......................................................TATGGCTCCGCGTGAGGC.................................................................................................................................................................................1811.001.00-------------------------------------------------------1.00----------------------------------------------
..AGTTCGCTCACCTCCCTCT.....................................................................................................................................................................................................................................191.000.00--------------------------------1.00---------------------------------------------------------------------
..................................................................................................................................................................................CCGGAGCGGGCCAGAGCCCCTG..................................................2211.001.00----------------------------------------------------1.00-------------------------------------------------
.......................................................................................AGGCACGTGGGCCTCGCC.................................................................................................................................................1811.001.00----------------------------------------------------------------1.00-------------------------------------
.......................................................................................AGGCACGTGGGCCTCGCCG................................................................................................................................................1911.001.00-------------------------------------------------------------1.00----------------------------------------
................................GCCGCCATGGCTCCTGTGGTT.....................................................................................................................................................................................................2111.001.00-----1.00------------------------------------------------------------------------------------------------
.......................................................................GCCTCGGCTCCAGGGGGGG................................................................................................................................................................191.000.00--------------------------1.00---------------------------------------------------------------------------
...............................TGCCGCCATGGCTCCTGTGAAAA....................................................................................................................................................................................................231.000.00--------------------------------------------------------------1.00---------------------------------------
.............................................CTGTGGTTAGTATGGCTC...........................................................................................................................................................................................1811.001.00--------------------------------------------------------------------------1.00---------------------------
................................................TGGTTAGTATGGCTCCGC........................................................................................................................................................................................1811.001.00---1.00--------------------------------------------------------------------------------------------------
.........................................................TGGCTCCGCGTGAGGCCTCGG............................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------1.00---------------------
..................................................GTTAGTATGGCTCCGCGTGAGGCCTCGGCTCC........................................................................................................................................................................3211.001.00--1.00---------------------------------------------------------------------------------------------------
..................................CGCCATGGCTCCTGTGGT......................................................................................................................................................................................................1820.500.50-----------------------------------------------------------------------------------------------------0.50
........................................................................................................................................................CCTGCTGGGGTGGGCTGGC...............................................................................1920.500.50----------------------------------------------------------------------------------------------------0.50-
........................ACTCCGCTGCCGCCATG.................................................................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------0.50----
.............................................................................................................................CTCGCTGGGGACGGC..............................................................................................................1520.500.50------------------------------------------------------------------------------------------------0.50-----
................CCTTTCTAACTCCGCTGC........................................................................................................................................................................................................................1820.500.50--------------------------------------------------------------------------------------------------0.50---
.................................CCGCCATGGCTCCTGTGG.......................................................................................................................................................................................................1820.500.50---------------------------------------------------------------------------------------------------0.50--
.....................................................................AGGCCTCGGCTCCAGG.....................................................................................................................................................................1640.250.25----------0.25-------------------------------------------------------------------------------------------

Antisense strand
GTAGTTCGCTCACCTCCCTTTCTAACTCCGCTGCCGCCATGGCTCCTGTGGTTAGTATGGCTCCGCGTGAGGCCTCGGCTCCAGGGGAGGCACGTGGGCCTCGCCGAGCCCGGCATCTACCCAGGCTCGCTGGGGACGGCGCCCTGCAGCGTCCTGCTGGGGTGGGCTGGCAGGTCGGCCGGAGCGGGCCAGAGCCCCTGCCGATCCCAGCACGTTGTAGGCGGAGGAGGCCGCGGCCCGAGGCTCGTGA
..................................................................((((.(((..(((((..((.(((((......))))).))))))).))).)).))..................................................................................................................................
................................................................65...........................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR040034(GSM532919)
G001N. (cervix)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
................................CCATACTAACCACAGGAGCCATGGCGGC.............................................................................................................................................................................................. 2811.001.00---------------------------------------------------------------------------------1.00--------------------
.........................................................................................................................................................................................................CGATCCCAGCACGTTCAG............................... 181.000.00-----------------------------------------------------------------1.00------------------------------------
...........................................................................................................................................................................................................ATCCCAGCACGTTGTTCCC............................ 191.000.00-------------------------------------1.00----------------------------------------------------------------
....................................................................GAGGCCTCGGCTCCAGCCGA.................................................................................................................................................................. 201.000.00--------1.00---------------------------------------------------------------------------------------------
...............CCCTTTCTAACTCCGCTCTAT...................................................................................................................................................................................................................... 211.000.00----------------------------------------------------------------------------------------1.00-------------
...............................................................................................CCGGGCTCGGCGAGGCCC......................................................................................................................................... 1821.001.00---------------1.00--------------------------------------------------------------------------------------
............................................................................................................................................................................................TCGGCAGGGGCTCTGG.............................................. 1620.500.50---------------------------------0.50--------------------------------------------------------------------