ID: uc001alp.1_intron_1_0_chr1_5623416_r.5p
GENE: AK125078(1)
chr1:5728001-5728250-


(1)
B-CELL
(3)
BRAIN
(5)
BREAST
(6)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
OTHER
(33)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
TGAGCCGCTGGTGCAGGGGAGGGAGACGGCTGTGAGACGCTGGAGTGCAGGTGAGGGAGCCGGCGGTGAGCCGCTGGAGTGTAGGGGAGGGAGCTGGCCATGAGCCGCTGGTGCAGGGGAGGGAGACGGCTGTGAGATGCTGGAGTGCAGGGGAGGGAGGCGGCCCTGAGCCGCTGGTGCAGGGGAGGGAGCTGGCCATGAGCCACTGGAGTGCTGGTGAGGGAGCTGGCCGTGAGCCGCTGGTGCAGGG
.................................................................................................((.((.(((...))).)).)).((((...((.((......(((......)))........)).)).))))...................................................................................
................................................................................................97.....................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR189783SRR189782TAX577739(Rovira)
total RNA. (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577740(Rovira)
total RNA. (breast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................................................................................CTGGAGTGCAGGGGAGGGAGGCGGC......................................................................................25112.0012.004.00-3.00-----------1.00---------1.00-1.001.00---1.00-----------------------
.....................................................................................................GAGCCGCTGGTGCAGTGG...................................................................................................................................188.000.00----4.00-4.00------------------------------------------------
.......................................................................CGCTGGAGTGTAGGG....................................................................................................................................................................1555.205.20-5.20-----------------------------------------------------
..............................................................................................................................................GAGTGCAGGGGAGGGAGGCGGC......................................................................................2215.005.001.00--------2.00--------1.00-1.00----------------------------------
.............................................................................................................................................................................CTGGTGCAGGGGAGGGAGCCGGC......................................................234.000.00--1.00------------------1.00---1.00---------1.00-------------------
.......................................................................................................................................................................GAGCCGCTGGTGCAGAGG.................................................................184.000.00---4.00---------------------------------------------------
...........................................................................................................CTGGTGCAGGGGAGGGAGACGGC........................................................................................................................2343.003.000.50-0.50------0.50------0.50-----------------------0.50-0.50------------
...................................................................................................................GGGGAGGGAGACGGCCTTC....................................................................................................................192.000.00-------------2.00-----------------------------------------
...................................................TGAGGGAGCCGGCGGTAGAG...................................................................................................................................................................................202.000.00-----1.00----1.00--------------------------------------------
..........................................................................................................................GAGACGGCTGTGAGAGGG..............................................................................................................182.000.00---------------2.00---------------------------------------
..........................................................................TGGAGTGTAGGGGAGTCTG.............................................................................................................................................................191.000.001.00------------------------------------------------------
.............................................................................................................................................................................CTGGTGCAGGGGAGGGAGCC.........................................................201.000.00----------------------------------1.00--------------------
......................................................................CCGCTGGAGTGTAGGG....................................................................................................................................................................1611.001.00-1.00-----------------------------------------------------
........................................................................GCTGGAGTGTAGGGG...................................................................................................................................................................1501.001.00----------------------------1.00--------------------------
.....................................................................GCCGCTGGAGTGTAGTGC...................................................................................................................................................................181.000.00------------------------------1.00------------------------
..............................................................................................................................................GAGTGCAGGGGAGGGAGGC.........................................................................................1911.001.001.00------------------------------------------------------
............................................................................................................................GACGGCTGTGAGATGACCG...........................................................................................................191.000.00-------1.00-----------------------------------------------
....................................ACGCTGGAGTGCAGGGAC....................................................................................................................................................................................................181.000.00--------------------------------1.00----------------------
.............................................................................................................................................GGAGTGCAGGGGAGGGAGGCGGC......................................................................................2311.001.00----------------1.00--------------------------------------
........................................................................GCTGGAGTGTAGGGGGGCA...............................................................................................................................................................1901.001.00-------1.00-----------------------------------------------
..............................................................................................................................................................................TGGTGCAGGGGAGGGAGCCGGC......................................................221.000.00-----------------1.00-------------------------------------
....................................................................................................................................TGAGATGCTGGAGTGTTGG...................................................................................................191.000.00-------1.00-----------------------------------------------
.................................................................................TAGGGGAGGGAGCTGTA........................................................................................................................................................171.000.00-----------------------------1.00-------------------------
.........................................................................CTGGAGTGTAGGGGAATT...............................................................................................................................................................181.000.00-----------------------1.00-------------------------------
...................................................TGAGGGAGCCGGCGGTATAC...................................................................................................................................................................................201.000.00-----1.00-------------------------------------------------
............................................................................................................................................................................................................ACTGGAGTGCTGGTGTGAT...........................191.000.00----------------------1.00--------------------------------
.......................................................................................................................................GATGCTGGAGTGCAGGGT.................................................................................................181.000.00--------------------------------------1.00----------------
...................................................................................................................................................CAGGGGAGGGAGGCGGC......................................................................................1750.800.800.40-0.20------------------------------------0.20---------------
.............................................................................................................................................................................CTGGTGCAGGGGAGGGAGCTGGC......................................................2330.670.67------------------0.33----------------------------0.33-------
.................................................................................................................................................TGCAGGGGAGGGAGGCGGC......................................................................................1920.500.50-------------------------------------------0.50-----------
.................................................................................................................CAGGGGAGGGAGACGGC........................................................................................................................1740.500.500.50------------------------------------------------------
.............................................................................................................GGTGCAGGGGAGGGAGACGGC........................................................................................................................2140.500.50---------------------------------------0.50---------------
.....................................................................................................GAGCCGCTGGTGCAGGGG...................................................................................................................................1860.500.50---0.50---------------------------------------------------
........................................................................................................CCGCTGGTGCAGGGGAGGGAGACGGC........................................................................................................................2640.500.50--------------------------------------------0.50----------
.....CGCTGGTGCAGGGGAGGGAGACGGC............................................................................................................................................................................................................................2540.500.50-----------------------------------------0.50-------------
..............................................................................................................................................................................TGGTGCAGGGGAGGGAGCTGGC......................................................2230.330.33----------------------------------------------0.33--------
..................................................................................................................................................GCAGGGGAGGGAGGCGGC......................................................................................1830.330.330.33------------------------------------------------------
..........................................................................................................................................................GGGAGGCGGCCCTGA.................................................................................1580.250.25----------------------------------------------------0.120.12-
....................................................................................................................................................................................................................GCTGGTGAGGGAGCTGG.....................1760.170.17--------------------------------------------------0.17----
...............................................................................................................................GGCTGTGAGATGCTGG...........................................................................................................1670.140.14---------------------------------------------------0.14---
...................................................................................................................................................................................CAGGGGAGGGAGCTGGC......................................................1790.110.11------------------------------------------------------0.11
....................................................................................................................................................AGGGGAGGGAGGCGGC......................................................................................1690.110.11---------------------------------------0.11---------------

Antisense strand
TGAGCCGCTGGTGCAGGGGAGGGAGACGGCTGTGAGACGCTGGAGTGCAGGTGAGGGAGCCGGCGGTGAGCCGCTGGAGTGTAGGGGAGGGAGCTGGCCATGAGCCGCTGGTGCAGGGGAGGGAGACGGCTGTGAGATGCTGGAGTGCAGGGGAGGGAGGCGGCCCTGAGCCGCTGGTGCAGGGGAGGGAGCTGGCCATGAGCCACTGGAGTGCTGGTGAGGGAGCTGGCCGTGAGCCGCTGGTGCAGGG
.................................................................................................((.((.(((...))).)).)).((((...((.((......(((......)))........)).)).))))...................................................................................
................................................................................................97.....................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR189783SRR189782TAX577739(Rovira)
total RNA. (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577740(Rovira)
total RNA. (breast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................GGAGACGGCTGTGAGG................................................................................................................. 162.000.00--------2.00----------------------------------------------
.........................................................................CTGGAGTGTAGGGGAGGGAGCT........................................................................................................................................................... 222.000.00-----------2.00-------------------------------------------
..........................................................................................................................................CCTCCCTCCCCTGCACTCCAGC.......................................................................................... 2212.002.00--1.00----------------------------------1.00-----------------
................................................................................GTAGGGGAGGGAGCTGGTA....................................................................................................................................................... 192.000.00------------2.00------------------------------------------
...........................................................................................................................................CTGGAGTGCAGGGGAGGGAT........................................................................................... 201.000.00------------------------------------1.00------------------
.............................................................................................................................................................AGGCGGCCCTGAGCCGGG........................................................................... 181.000.00---------------------------------1.00---------------------
...............................................................................................................................GGCTGTGAGATGCTGGATAG....................................................................................................... 201.000.00----------1.00--------------------------------------------
...............................................................................................................................GGCTGTGAGATGCTGGATAGA...................................................................................................... 211.000.00-----1.00-------------------------------------------------
...............................................................................................................................GGCTGTGAGATGCTGGATTGA...................................................................................................... 211.000.00-----1.00-------------------------------------------------
.......................................................................................................................................CTCCCTCCCCTGCACTCCAGCATC........................................................................................... 2411.001.00--------1.00----------------------------------------------
...........................................................................................................................................CTGGAGTGCAGGGGAGGGT............................................................................................ 191.000.00--------------1.00----------------------------------------
......................................ACCGCCGGCTCCCTCACCTGCACTCCAGC....................................................................................................................................................................................... 2911.001.00-------------------1.00-----------------------------------
..........................................................................................................................................CCCTCCCCTGCACTCCAGC............................................................................................. 1930.670.67-----------------0.33------------------------------0.33------
.....................................................................................................CCTGCACCAGCGGCTC..................................................................................................................................... 1690.440.44---------------------------------------------0.44---------
..........................................................................................................................................CCTCCCCTGCACTCCAGC.............................................................................................. 1860.330.33-------------------0.17--------------------0.17--------------
..................................................................................................CACCAGCGGCTCATG......................................................................................................................................... 1540.250.25-------------------------------------------------0.25-----
...........................................................................................................................................CCTCCCCTGCACTCCAG.............................................................................................. 1770.140.14--------------------0.14----------------------------------