ID: uc001alm.1_intron_0_0_chr1_4715515_f.5p
GENE: AJAP1(1)
chr1:4715465-4715714+


(1)
BRAIN
(1)
BREAST
(7)
CELL-LINE
(8)
CERVIX
(2)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(10)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
CCCGCTCCCCGAAACGTGACCATGTGGATTCAACAGCTTTTAGGACTCAGGTGAGCGACCCGGCCGGCGCCGGGTGCGTGTGGGCGCGTGGGTGCCAGGCTGGGCGGAAGCGGCGCTTTCCTCTATGTTGCAAATCAAGGGACCCCTCTTCGCTTCCCGCAAGCGGGCAACGGGGTGCACCGGTAGCCGGAAAGGGGCGCCCGCCCGGAGCCTGGAGCAGCACCGCGGCCCTGGCGGGGAGCGGCCGGGT
..................................................((...((.((((((((((((((.((((......)))).))).)))).)))))))))...))...........................................................................................................................................
..................................................51.............................................................114......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR040007(GSM532892)
G601T. (cervix)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM532876(GSM532876)
G547T. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040039(GSM532924)
G531T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.........................................................ACCCGGCCGGCGCCGGC................................................................................................................................................................................17143.003.0025.0015.00-----2.00-------------------1.00-----------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGCGC........1811.000.001.00-5.003.00-------1.001.00--------------------------
.........................................................ACCCGGCCGGCGCCGGCA...............................................................................................................................................................................1817.003.00-3.00--4.00----------------------------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGCGCT.......195.000.00--4.001.00-----------------------------------
..............................................................................................................................................................................................................................CCGCGGCCCTGGCGGAGC..........1834.000.33--------1.001.001.00--------------------1.00-------
.........................................................ACCCGGCCGGCGCCGG.................................................................................................................................................................................1613.003.00-2.00-----------------------1.00-------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGCG.........172.000.00--------------1.00---------1.00--------------
.........................................................ACCCGGCCGGCGCCGGCAGT.............................................................................................................................................................................2012.003.00-------------1.00----------------1.00--------
........................TGGATTCAACAGCTTTTAGGACT...........................................................................................................................................................................................................2312.002.00-----2.00---------------------------------
..............................................................................................................................................................................................................................CCGCGGCCCTGGCGGAGT..........1832.000.33-----1.00--------------1.00------------------
.................................................................................................................................................................................................................................CGGCCCTGGCGGGGAGC........1751.601.600.800.80-------------------------------------
...............................................................................................................................................................................................................................CGCGGCCCTGGCGGGGC..........171.000.00-----------------------------1.00---------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGCGA........181.000.00--1.00------------------------------------
..............................................................................................................................................................................................................................CCGCGGCCCTGGCGGAGCG.........1931.000.33-1.00-------------------------------------
.........................................................ACCCGGCCGGCGCCGGG................................................................................................................................................................................1711.001.001.00--------------------------------------
.........................................................ACCCGGCCGGCGCCGGTCGG.............................................................................................................................................................................2011.003.00-------------------1.00-------------------
...................................................................................................................................................................................................................................GCCCTGGCGGGGAGCGGG.....181.000.00------------------1.00--------------------
.........................................................ACCCGGCCGGCGCCGGCAG..............................................................................................................................................................................1911.003.00-1.00-------------------------------------
......................................TTTAGGACTCAGGTGGAGA.................................................................................................................................................................................................191.000.00------1.00--------------------------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGCGT........181.000.00--1.00------------------------------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGTGT........181.000.00---------------1.00-----------------------
...........................................................................GCGTGTGGGCGCGTGGCGC............................................................................................................................................................191.000.00-----------------------1.00---------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGCGAT.......191.000.00--1.00------------------------------------
.........................................................ACCCGGCCGGCGCCGGCAGG.............................................................................................................................................................................2011.003.00----------------------------1.00----------
.................................................................................................GGCTGGGCGGAAGCGGAGCG.....................................................................................................................................201.000.00------1.00--------------------------------
...........................................................................................................................................................................................CGGAAAGGGGCGCCCTGCA............................................191.000.00--------------------------------1.00------
..........................................................CCCGGCCGGCGCCGGG................................................................................................................................................................................1621.001.001.00--------------------------------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGCGG........181.000.00---1.00-----------------------------------
............................................................CGGCCGGCGCCGGGTCGGG...........................................................................................................................................................................191.000.001.00--------------------------------------
.........................................................ACCCGGCCGGCGCCGGA................................................................................................................................................................................1711.003.001.00--------------------------------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGCGCG.......191.000.00---1.00-----------------------------------
.................................................................................................................................................................................................................................CGGCCCTGGCGGGGAGG........1760.670.670.170.50-------------------------------------
.................................................................................................................................................................................................................................CGGCCCTGGCGGGGAG.........1660.670.670.330.33-------------------------------------
....................................................................................................................................................................................................................................CCCTGGCGGGGAGCGGC.....1720.500.50----------------------------------0.50----
...........................................................CCGGCCGGCGCCGGG................................................................................................................................................................................1550.400.400.20-----------------------------------0.20--
...........................................................CCGGCCGGCGCCGGGA...............................................................................................................................................................................1650.400.400.200.20-------------------------------------
..............................................................................................................................................................................................................................CCGCGGCCCTGGCGG.............1530.330.33-----------------------------------0.33---
..........................................................CCCGGCCGGCGCCGG.................................................................................................................................................................................1580.250.250.12-------0.12------------------------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGAGC........1850.200.20--0.20------------------------------------
.................................................................................................................................................................................................................................CGGCCCTGGCGGGGAC.........1660.170.170.17--------------------------------------
.................................................................................................................................................................................................................................CGGCCCTGGCGGGGA..........1560.170.17-0.17-------------------------------------
........................................................................................................................................................................................................................................GGCGGGGAGCGGCCGGG.1770.140.14-------------------------------------0.14-

Antisense strand
CCCGCTCCCCGAAACGTGACCATGTGGATTCAACAGCTTTTAGGACTCAGGTGAGCGACCCGGCCGGCGCCGGGTGCGTGTGGGCGCGTGGGTGCCAGGCTGGGCGGAAGCGGCGCTTTCCTCTATGTTGCAAATCAAGGGACCCCTCTTCGCTTCCCGCAAGCGGGCAACGGGGTGCACCGGTAGCCGGAAAGGGGCGCCCGCCCGGAGCCTGGAGCAGCACCGCGGCCCTGGCGGGGAGCGGCCGGGT
..................................................((...((.((((((((((((((.((((......)))).))).)))).)))))))))...))...........................................................................................................................................
..................................................51.............................................................114......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR040007(GSM532892)
G601T. (cervix)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM532876(GSM532876)
G547T. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040039(GSM532924)
G531T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..........................................................CCCGGCCGGCGCCGGGG............................................................................................................................................................................... 1724.000.003.001.00-------------------------------------
...........................................................CCGGCCGGCGCCGGGCGCC............................................................................................................................................................................ 1951.000.001.00--------------------------------------
.....................................................................................GCGTGGGTGCCAGGCTTC................................................................................................................................................... 181.000.00-----------------1.00---------------------
................................................................................................................................................................................................................................GCGGCCCTGGCGGGGACCTC...... 201.000.00----------------1.00----------------------
...........................................................CCGGCCGGCGCCGGGCGGC............................................................................................................................................................................ 1951.000.00-1.00-------------------------------------
..................................................................................................................GCTTTCCTCTATGTTACGT..................................................................................................................... 191.000.00----------------------1.00----------------
...........................ATTCAACAGCTTTTAGT.............................................................................................................................................................................................................. 171.000.00--------------------------1.00------------
............................................................................................................................................................................................................................GCCAGGGCCGCGGTG............... 1530.670.67---------------------------------0.67-----
..........................................................CCGGCGCCGGCCGGG................................................................................................................................................................................. 1580.380.38-0.25------------------------------------0.12
..........................................................CCCGGCCGGCGCCGGCGCG............................................................................................................................................................................. 1980.120.00-0.12-------------------------------------