ID: uc001ako.4
GENE: WDR8(7)
chr1:3551589-3551773-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(18)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(2)
HELA 		(4)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCTGGAGCCCCAGCAGTCAGTTCCTGGCAGTTGGGAGCTATGATGGAAAGGTGGGAACCAGTGCAGGGCACTCAGGAAGTCCGACCGCCCAGCGGGCCGGGCCCTGCCTCACCTGTGCATGGTTTCCTTCCTCAGGTGCGCATCCTTAATCACGTGACTTGGAAAATGATCACGGAGTTTGGGCA
....................................................(((((((((((((((.....((((..(((((.((((...))))..))))))))).....))))))).))))))))..........................................................
..................................................51..................................................................................135................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
..................................................GTGGGAACCAGTGCAGGGCAC..................................................................................................................21123.0023.009.006.00---1.00------1.001.00-2.00---1.00----------1.00----1.00-----------
..................................................GTGGGAACCAGTGCAGGGC....................................................................................................................19120.0020.003.002.001.00--1.00------1.00-1.00------1.001.00-1.00-1.00-1.00--1.001.001.001.00--1.00------1.00--
..................................................GTGGGAACCAGTGCAGGGCA...................................................................................................................2019.009.004.00-------3.00----------------1.00----------1.00----------
..................................................GTGGGAACCAGTGCAGGGCACATC...............................................................................................................2416.0023.00----6.00------------------------------------------
..................................................GTGGGAACCAGTGCAGGGAAC..................................................................................................................2126.001.00---6.00-------------------------------------------
..................................................GTGGGAACCAGTGCAGGGCACTC................................................................................................................2315.005.001.00--------3.00---------------------------------1.00---
..................................................GTGGGAACCAGTGCAGGGCACT.................................................................................................................2214.004.00--4.00--------------------------------------------
.................................................................................................................................................................GAAAATGATCACGGAGTTTGGGCA2413.003.00----------3.00------------------------------------
........................TGGCAGTTGGGAGCTATG...............................................................................................................................................1813.003.00-----------3.00-----------------------------------
..................................................GTGGGAACCAGTGCAGGGCAT..................................................................................................................2113.009.00--2.00--------------------------1.00-----------------
..................................................GTGGGAACCAGTGCAGGGCAA..................................................................................................................2112.009.00-1.00-----------1.00---------------------------------
.............................GTTGGGAGCTATGATGGAAAGGTGC...................................................................................................................................252.000.00------------------2.00----------------------------
..................................................GTGGGAACCAGTGCAGGGCACTCAGG.............................................................................................................2612.002.00--------------------2.00--------------------------
..................................................GTGGGAACCAGTGCAGGGCACTCA...............................................................................................................2411.001.00-----------------1.00-----------------------------
......................................................................................................................................................CACGTGACTTGGAAAATG.................1811.001.00-----------------------1.00-----------------------
.....................................................................................................................................................................ATGATCACGGAGTTTGGGCA2011.001.00-------1.00---------------------------------------
......................CCTGGCAGTTGGGAGCTATGATGGA..........................................................................................................................................2511.001.00---------------------------1.00-------------------
......................................................GAACCAGTGCAGGGCAC..................................................................................................................1711.001.00------------------------------------------1.00----
..............................................................................................................................................................TTGGAAAATGATCACGGAGTTTGGGC.2611.001.00-----1.00-----------------------------------------
.......................................................................................................................................................................GATCACGGAGTTTGGGCA1811.001.00----------------1.00------------------------------
..................................................GTGGGAACCAGTGCAGGGCACTA................................................................................................................2311.004.00-1.00---------------------------------------------
.........................................................................................................................................................GTGACTTGGAAAATGATCACGGAGTTTGGGC.3111.001.00------1.00----------------------------------------
..................................................GTGGGAACCAGTGCAGGGCACA.................................................................................................................2211.0023.00-------1.00---------------------------------------
..................................................GTGGGAACCAGTGCATGGC....................................................................................................................191.000.00-----1.00-----------------------------------------
..................................................GTGGGAACCAGTGCAGGG.....................................................................................................................1821.001.00-0.50-----------0.50---------------------------------
...................................................................................................................................................................AAATGATCACGGAGTTTG....1811.001.00-------------------1.00---------------------------
...................................................TGGGAACCAGTGCAGGGCA...................................................................................................................1921.001.00------0.50-----0.50----------------------------------
...............................................................................................................................................................TGGAAAATGATCACGGAGTT......2011.001.00----------------1.00------------------------------
..................................................GTGGGAACCAGTGCAGGGCACAAT...............................................................................................................2411.0023.00--1.00--------------------------------------------
...........................................................................................................................................................GACTTGGAAAATGATCACGGAGTTTGGGC.2911.001.00-----1.00-----------------------------------------
........................................................................................................................................................CGTGACTTGGAAAATGATCACGG..........2311.001.00---------------------------------------1.00-------
..................................................GTGGGAACCAGTGCAGGGCATT.................................................................................................................2211.009.00----------------------------------------1.00------
................................................................................................................................................................GGAAAATGATCACGGAGTT......1911.001.00-------1.00---------------------------------------
............................................................................................................TCACCTGTGCATGGTTTCCTTTA......................................................231.000.00---------------------------------------------1.00-
............GCAGTCAGTTCCTGGCAGTTGGAAG....................................................................................................................................................251.000.00-----------------------------------------1.00-----
...........................................................................................................................................................GACTTGGAAAATGATCACGGAG........2211.001.00---------------------1.00-------------------------
........................TGGCAGTTGGGAGCTATGATGGAAAGGT.....................................................................................................................................2811.001.00------1.00----------------------------------------
..................................................GTGGGAACCAGTGCAGGGCACTAA...............................................................................................................2411.004.00-----------------1.00-----------------------------
..................................................GTGGGAACCAGTGCAGGCC....................................................................................................................191.000.00-1.00---------------------------------------------
..................................................GTGGGAACCAGTGCAGGGCAAAAA...............................................................................................................2411.009.001.00----------------------------------------------
........................TGGCAGTTGGGAGCTATGATGG...........................................................................................................................................2211.001.00------1.00----------------------------------------
.CTGGAGCCCCAGCAGT........................................................................................................................................................................1640.250.25----------------------------------------------0.25

Antisense strand
CCTGGAGCCCCAGCAGTCAGTTCCTGGCAGTTGGGAGCTATGATGGAAAGGTGGGAACCAGTGCAGGGCACTCAGGAAGTCCGACCGCCCAGCGGGCCGGGCCCTGCCTCACCTGTGCATGGTTTCCTTCCTCAGGTGCGCATCCTTAATCACGTGACTTGGAAAATGATCACGGAGTTTGGGCA
....................................................(((((((((((((((.....((((..(((((.((((...))))..))))))))).....))))))).))))))))..........................................................
..................................................51..................................................................................135................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
..........CAGCAGTCAGTTCCTAAGC............................................................................................................................................................ 191.000.00--------------1.00--------------------------------
.......................................................................................CCCAGCGGGCCGGGCAGT................................................................................ 181.000.00--------------------------------------1.00--------
...........................................................................................GCAGGGCCCGGCCCGC.............................................................................. 1620.500.50-0.50---------------------------------------------
.....................................................................................GCCCGGCCCGCTGGGCG................................................................................... 1730.330.33-0.33---------------------------------------------