ID: uc001akg.3_intron_3_0_chr1_3383902_f.3p
GENE: (4)
chr1:3385244-3385493+


(2)
AGO1.ip 		(9)
B-CELL 		(12)
BREAST 		(25)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(5)
SKIN 		(2)
UTERUS

Sense strand
CCAAGGCGGGTTACACAGAGAGGAAGGTGACGGGGATAGGCCCTCGGCAGGACAGGCCTACTCCAGGATCGGACCTACCTGAGCCCTGTGGGGTGGCTGTCCATGTTGGCCCTGGTCCATCAGGAGGAGGAAAGAAGGGAGACTTTGGCCCAGGCTTCTAGGACGTGTGACCGAGAGCTCCTGGGCCTGTGTCCCCCCAGGTGGTGGAATTGGGCATCCTGGACCAGCTCTCCACTGAGGAGCGGAAAAG
........................................................................................................................................((((.((...((((((((.((((.((........)).))))..)))))))).)).)))).......................................................
.................................................................................................................................130..............................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785TAX577579(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577744(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		GSM532883(GSM532883)
G871N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCT..............................................................................................22110.0010.00--2.00---2.00--1.00------2.00--1.00---------------------------------1.00----------1.00---
...................................................................................................................................................................................................CCCAGGTGGTGGAATTGGTA...................................20110.002.00-9.00------------------------------1.00-----------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGC...............................................................................................2119.009.00--1.00-5.00--2.00---------------------------1.00--------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCAG.............................................................................................2317.009.00---6.00------------------------------1.00---------------------------------
....................................................................................................................................................................................................CCAGGTGGTGGAATTGGTA...................................196.000.00-1.00---5.00--------------------------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTAT............................................................................................2415.0010.00--1.00------------1.00-----1.00---------------------------1.00--1.00---------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTA.............................................................................................2314.0010.00--------1.00---1.00-------------------------1.00---1.00-------------------------
....................................................................................................................................................................................................CCAGGTGGTGGAATTGGTAG..................................204.000.00----------1.00-------1.00-2.00-----------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGG................................................................................................2014.004.00--------1.00----1.00---1.00-------1.00------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTT.............................................................................................2313.003.00--1.00----------1.001.00-----------------------------------------------------
.....................................................................................................................................................................................................CAGGTGGTGGAATTGGTA...................................183.000.00-------------------------------1.00-------1.00----1.00-----------------------
.....................................................................................................................................................................................................CAGGTGGTGGAATTGGTAG..................................193.000.00-2.00--------------------------------------------------------1.00---------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTTT............................................................................................2413.003.00--1.00---1.00--------------1.00----------------------------------------------
...................................................................................................................................................................................................CCCAGGTGGTGGAATTG......................................1712.002.00-----------------------2.00--------------------------------------------
...................................................................................................................................................................................................CCCAGGTGGTGGAATTGG.....................................1812.002.00-1.00------------------------1.00-----------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCCT.............................................................................................2312.009.00-----------------1.00---------------------------------1.00----------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCAT.............................................................................................2312.009.00----------------------------------------------1.00--------1.00------------
......................................................................................................................................AAGGGAGACTTTGGCCCAG.................................................................................................1912.002.00-------1.00---------------------------------------------------1.00--------
...................................................................................................................................................................................................CCCAGGTGGTGGAATTGGTAG..................................2112.002.00----------1.00-------1.00-------------------------------------------------
..............................................................................................................................GAGGAAAGAAGGGAGTTT..........................................................................................................181.000.00-----------------------------1.00--------------------------------------
...................................................................................................................................................................................................CCCAGGTGGTGGAATTGGTAGA.................................2211.002.00-1.00------------------------------------------------------------------
......................................................................................................................................................................................................AGGTGGTGGAATTGGTAG..................................181.000.00--------------------------------------------------------1.00-----------
.............................................................................................................................GGAGGAAAGAAGGGAGTTT..........................................................................................................191.000.00------------------------1.00-------------------------------------------
.............................................................................................................................GGAGGAAAGAAGGGAGTGT..........................................................................................................191.000.00------------------------------------------------------1.00-------------
....................................................................................................................................................................................................CCAGGTGGTGGAATTGGTAGA.................................211.000.00-----------------------------------------1.00--------------------------
.......................................................................................................................................AGGGAGACTTTGGCCCAGGCT..............................................................................................2111.001.00---------1.00----------------------------------------------------------
......................................................................................................................................................................................................AGGTGGTGGAATTGGGAGAC................................201.000.00-------------------------------------------1.00------------------------
..............................................................................................................................GAGGAAAGAAGGGAGTGT..........................................................................................................181.000.00------------------------1.00-------------------------------------------
.....................................................................................................................................GAAGGGAGACTTTGGCCCAGGCA..............................................................................................231.000.00---------1.00----------------------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTAAA...........................................................................................2511.0010.00------------------------------------------------1.00-------------------
......................................................................................................................................AAGGGAGACTTTGGCCCACGC...............................................................................................211.000.00--1.00-----------------------------------------------------------------
.......................................................................................................................................AGGGAGACTTTGGCCCAGGCTTT............................................................................................231.000.00----------------------------------------1.00---------------------------
........................................................................................................................................................GGCTTCTAGGACGTGTGACC..............................................................................2011.001.00--------------------------------------------------1.00-----------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTAGA...........................................................................................2511.0010.00---------------------------------------------------------------1.00----
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTAAT...........................................................................................2511.0010.00------------1.00-------------------------------------------------------
.....................................................................................................................................................................................................CAGGTGGTGGAATTGGT....................................171.000.00----------------------------1.00---------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGA................................................................................................2011.002.00--------1.00-----------------------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTAA............................................................................................2411.0010.00--1.00-----------------------------------------------------------------
....................................................................................................................................AGAAGGGAGACTTTGGCCCAGGCT..............................................................................................2411.001.00---------------1.00----------------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGAAAA.............................................................................................2311.002.00---------------------------1.00----------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTTA............................................................................................2411.003.00--------------1.00-----------------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCAC.............................................................................................2311.009.00------------------------------1.00-------------------------------------
.....................................................................................................................................GAAGGGAGACTTTGGCCCAGGCT..............................................................................................2311.001.00-------------------1.00------------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGT................................................................................................2011.002.00-----------1.00--------------------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCA..............................................................................................2211.009.00------------------------------------------------------------------1.00-
............................................................................................................................................................................GAGAGCTCCTGGGCCGGCT...........................................................191.000.00----------------------1.00---------------------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGTCAG.............................................................................................2311.002.00---1.00----------------------------------------------------------------
.......................................................................................................................................AGGGAGACTTTGGCCCAGGC...............................................................................................2011.001.00---------------------------------------------1.00----------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCAA.............................................................................................2311.009.00-------------------------------------1.00------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGAA..............................................................................................2211.004.00------------------------------------1.00-------------------------------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTTAA...........................................................................................2511.003.00-------------------------------------------------------------1.00------
.......................................................................................................................................................................................................GGTGGTGGAATTGGGAGA.................................181.000.00---------------------------------------------------------1.00----------
......................................................................................................................................AAGGGAGACTTTGGCCCAGGCTGGA...........................................................................................2511.0010.00----------------------1.00---------------------------------------------
......................................................................................................................ATCAGGAGGAGGAAAGTGCA................................................................................................................201.000.00--------------------------------------------------------------1.00-----
......................................................................................................................................AAGGGAGACTTTGGCCCTGGC...............................................................................................211.000.00-----------1.00--------------------------------------------------------
..................................................................................................................................AAAGAAGGGAGACTTAGCT.....................................................................................................191.000.00------------------------------------------------------------1.00-------
.......................................................................................................................................AGGGAGACTTTGGCCCAGGCTTA............................................................................................231.000.00------1.00-------------------------------------------------------------
...................................................................................................................................................................................................CCCAGGTGGTGGAATGGTA....................................1970.140.14-0.14------------------------------------------------------------------
...................................................................................................................................................................................................CCCAGGTGGTGGAAT........................................1570.140.14-0.14------------------------------------------------------------------

Antisense strand
CCAAGGCGGGTTACACAGAGAGGAAGGTGACGGGGATAGGCCCTCGGCAGGACAGGCCTACTCCAGGATCGGACCTACCTGAGCCCTGTGGGGTGGCTGTCCATGTTGGCCCTGGTCCATCAGGAGGAGGAAAGAAGGGAGACTTTGGCCCAGGCTTCTAGGACGTGTGACCGAGAGCTCCTGGGCCTGTGTCCCCCCAGGTGGTGGAATTGGGCATCCTGGACCAGCTCTCCACTGAGGAGCGGAAAAG
........................................................................................................................................((((.((...((((((((.((((.((........)).))))..)))))))).)).)))).......................................................
.................................................................................................................................130..............................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189785TAX577579(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577744(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		GSM532883(GSM532883)
G871N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.......................................................................................................................................................................................................................ATCCTGGACCAGCTCC................... 1638.000.0038.00-------------------------------------------------------------------
...................GAGGAAGGTGACGGGAAG..................................................................................................................................................................................................................... 181.000.00-----------------------------------------------------------------1.00--
......................GAAGGTGACGGGGATACCA................................................................................................................................................................................................................. 191.000.00-----------------------------------------------1.00--------------------
........................................................................................................................................................................GACCGAGAGCTCCTGGGTTGT............................................................. 211.000.00---------------------------------1.00----------------------------------
........................................................................................................TGGACCAGGGCCAAC................................................................................................................................... 1540.250.25-------------------------------------------------------------------0.25