ID: uc001aju.1_intron_2_0_chr1_2519232_f.3p
GENE: (3)
chr1:2519629-2519878+


(1)
AGO1.ip OTHER.mut
(2)
B-CELL
(1)
BRAIN
(2)
BREAST
(3)
CELL-LINE
(1)
HEART
(2)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
CTAGCAGCCACTGGGCTCGGTGTCCAACCTGCCGGTGGGCTGGGCTGGCTACTGATCTGGTCGCCTGTGCCATCTCTGAGCCCTGGTGAGGCGGGTGGGTGGGGTGGGGCCTGACCTAGGAACTGGTCTCATGGACACTGGAGCAGGCTCTGGACCCAGGCTTCTCCGGAGTTTGGCCAAGCGACCTGGTGTCTTCGCAGGTACAACAGCCTGAGCATCCTCCCAGCAGCTCTGGGGAAGCCCGTGCGTG
.....................................................................................(((((((.(((((((.(((.....))).))))....))).)))))))......................................................................................................................
.................................................................................82..................................................134..................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................TGACCTAGGAACTGGGCGT........................................................................................................................1930.000.0030.00--------------
...............................................................................................................TGACCTAGGAACTGGGGGT........................................................................................................................198.000.008.00--------------
...............................................................................................................TGACCTAGGAACTGGGCG.........................................................................................................................184.000.004.00--------------
...............................................................................................................TGACCTAGGAACTGGGCGG........................................................................................................................194.000.004.00--------------
...............................................................................................................TGACCTAGGAACTGGGG..........................................................................................................................173.000.003.00--------------
...............................................................................................................TGACCTAGGAACTGGCGGT........................................................................................................................192.000.002.00--------------
..................................GTGGGCTGGGCTGGCTGGGC....................................................................................................................................................................................................202.000.00-2.00-------------
......................................................................................TGAGGCGGGTGGGTGGGTAGT...............................................................................................................................................211.000.00----------1.00----
...............................................................................................................TGACCTAGGAACTGGCCTT........................................................................................................................191.000.001.00--------------
...............................................................................................................TGACCTAGGAACTGGGGG.........................................................................................................................181.000.001.00--------------
...............................................................................................................TGACCTAGGAACTGGTCGT........................................................................................................................191.000.001.00--------------
...............................................................................................................TGACCTAGGAACTGGGGGG........................................................................................................................191.000.001.00--------------
.........................................................................................................................................CTGGAGCAGGCTCTGGAA...............................................................................................181.000.00-----------1.00---
...............................................................................................................TGACCTAGGAACTGGCTG.........................................................................................................................181.000.001.00--------------
..............................................................................................................CTGACCTAGGAACTGGCAT.........................................................................................................................191.000.00------------1.00--
.....................................................................................................GGGTGGGGCCTGACCGA....................................................................................................................................171.000.00--1.00------------
...............................................................................................................TGACCTAGGAACTGGCCGT........................................................................................................................191.000.001.00--------------
...............................................................................................................TGACCTAGGAACTGGGGGC........................................................................................................................191.000.001.00--------------
..................................................................................................................................ATGGACACTGGAGCAGAAG.....................................................................................................191.000.00------1.00--------
...............................................................................................................TGACCTAGGAACTGGGCTT........................................................................................................................191.000.001.00--------------
...............................................................................................................TGACCTAGGAACTGGTGCGT.......................................................................................................................201.000.001.00--------------
...............................................................................................................TGACCTAGGAACTGGGCGA........................................................................................................................191.000.001.00--------------
..............................................................................................................CTGACCTAGGAACTGACA..........................................................................................................................181.000.00---1.00-----------
...............................................................................................................TGACCTAGGAACTGGGTGT........................................................................................................................191.000.001.00--------------
...................................................................................................................................................................................AGCGACCTGGTGTCTGCTC....................................................191.000.00-----1.00---------
..................................................................................CTGGTGAGGCGGGTGGGCAGG...................................................................................................................................................211.000.00--------1.00------
...............................................................................................................TGACCTAGGAACTGGGGGA........................................................................................................................191.000.001.00--------------
.....................................................................................GTGAGGCGGGTGGGT......................................................................................................................................................1560.170.17--------------0.17

Antisense strand
CTAGCAGCCACTGGGCTCGGTGTCCAACCTGCCGGTGGGCTGGGCTGGCTACTGATCTGGTCGCCTGTGCCATCTCTGAGCCCTGGTGAGGCGGGTGGGTGGGGTGGGGCCTGACCTAGGAACTGGTCTCATGGACACTGGAGCAGGCTCTGGACCCAGGCTTCTCCGGAGTTTGGCCAAGCGACCTGGTGTCTTCGCAGGTACAACAGCCTGAGCATCCTCCCAGCAGCTCTGGGGAAGCCCGTGCGTG
.....................................................................................(((((((.(((((((.(((.....))).))))....))).)))))))......................................................................................................................
.................................................................................82..................................................134..................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
....................................................................CCTCACCAGGGCTCAGAGATGGC............................................................................................................................................................... 2311.001.00---------1.00-----
....................................................................CCCGCCTCACCAGGGCTCAGAGATGGC........................................................................................................................................................... 2711.001.00-------1.00-------
..........................................................................................................................................................................................................................CCTCCCAGCAGCTCTTGGA............. 191.000.00----1.00----------
...........................................................................................................GTTCCTAGGTCAGGCC............................................................................................................................... 1640.250.25-------------0.25-