ID: uc001ags.1_intron_10_0_chr1_1576475_r.3p
GENE: CDK11B(5)
chr1:1576425-1576674-


(6)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
TGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGCGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTGCATATCCATTCTTGGGAACACTTGTTGCTTAGCTGAAGCGGAGCCCGCATCCTGCCTGTGGCAGCACTCGCCCCGGTGCTGGTCTGAGCAGACGCCTCCTTTCTCTTGCAGAAGAAGTAAGTGAGGAAGAAATGAGTGAAGATGAAGAACGAGAAAATGAA
............................................(((((((.((((((......(((....)))......))))))))............)))))......(((((((..((.((.((((...)))).))..))....)))))))...............................................................................................
............................................45............................................................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.................................................AGCGCTGGGATTACAGGCGAGCC..................................................................................................................................................................................2314.000.0010.004.00----------------------------------------------
................................................AAGCGCTGGGATTACAGGCGAGCC..................................................................................................................................................................................248.000.006.002.00----------------------------------------------
...................................................................................................................................................................................................................................AAGATGAAGAACGAGAAAATGA.2223.003.00-----1.50---1.00------------------------------0.50-------
.................................................AGCGCTGGGATTACAGGCGATTC..................................................................................................................................................................................232.000.002.00-----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGACCC..................................................................................................................................................................................232.000.00-2.00----------------------------------------------
...........................TCCACCCGCCTCGGCCTCCCAAAGCGCAGGG................................................................................................................................................................................................312.000.00-2.00----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGAACCC...............................................................................................................................................................................262.000.00-2.00----------------------------------------------
......................................................................AGCCACCGCGCCCGGCCTGCAGACC...........................................................................................................................................................252.000.002.00-----------------------------------------------
..........................ATCCACCCGCCTCGGCCTCCCAAAGCGCCAGG................................................................................................................................................................................................322.000.002.00-----------------------------------------------
................................................AAGCGCTGGGATTACAGGCGTGAGCAC...............................................................................................................................................................................272.000.002.00-----------------------------------------------
................................................AAGCGCTGGGATTACAGGCGCTAG..................................................................................................................................................................................242.000.002.00-----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGAGCCACATG...........................................................................................................................................................................302.000.00-2.00----------------------------------------------
...........................................................................................................................................................................................................................AATGAGTGAAGATGAAGAACG..........2121.501.50--------1.50---------------------------------------
................................................................................................................................................................................................................................GTGAAGATGAAGAACTGA........181.000.00------1.00-----------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGGCT.................................................................................................................................................................................241.000.00-1.00----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGAGCTAG..............................................................................................................................................................................271.000.001.00-----------------------------------------------
...............................................................................................................................CGGAGCCCGCATCCTGCCTGTGGA...................................................................................................241.000.00---1.00--------------------------------------------
.................................................AGCGCTGGGATTACAGGCGAGCT..................................................................................................................................................................................231.000.001.00-----------------------------------------------
......................................................................AGCCACCGCGCCCGGCCTGCACGCA...........................................................................................................................................................251.000.001.00-----------------------------------------------
...................................................CGCTGGGATTACAGGCGTGAGCCGTG.............................................................................................................................................................................261.000.00-------------------------------1.00----------------
..........................ATCCACCCGCCTCGGCCTCATTT.........................................................................................................................................................................................................231.000.001.00-----------------------------------------------
................................................AAGCGCTGGGATTACAGGCGTGCGTG................................................................................................................................................................................261.000.001.00-----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGAGCAAGC.............................................................................................................................................................................281.000.001.00-----------------------------------------------
........................TGATCCACCCGCCTCGGCCGCCA...........................................................................................................................................................................................................231.000.00-1.00----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGAGCAAG..............................................................................................................................................................................271.000.00-1.00----------------------------------------------
................................................................................................................................................................................................................AGTGAGGAAGAAATGAGTGAAGA...................2321.001.00----------------------------1.00-------------------
................................................AAGCGCTGGGATTACAGGCGTGAGCAATC.............................................................................................................................................................................291.000.00-1.00----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGAGCAGCT.............................................................................................................................................................................281.000.001.00-----------------------------------------------
...................................................CGCTGGGATTACAGGCGTGAGTCAG..............................................................................................................................................................................251.000.00-1.00----------------------------------------------
...........................................................................................................................................................................................................................AATGAGTGAAGATGAAGAACGAGAA......2521.001.00------------------------------1.00-----------------
..........................ATCCACCCGCCTCGGCCTCCCAAAGCGGGG..................................................................................................................................................................................................301.000.001.00-----------------------------------------------
.............................................................ACAGGCGTGAGCCACCGCGCGGCA.....................................................................................................................................................................241.000.001.00-----------------------------------------------
................................................AAGCGCTGGGATTACAGGCGAGTC..................................................................................................................................................................................241.000.00-1.00----------------------------------------------
...............................................AAAGCGCTGGGATTACAGGCGT.....................................................................................................................................................................................2201.001.00----------------1.00-------------------------------
...............................................AAAGCGCTGGGATTACAGGCGAGCC..................................................................................................................................................................................251.000.001.00-----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGAGCCGCG.............................................................................................................................................................................281.000.001.00-----------------------------------------------
...................................................CGCTGGGATTACAGGCGTGAGCCACCGCGCTTGG.....................................................................................................................................................................341.000.00---------------------1.00--------------------------
.................................................AGCGCTGGGATTACAGGCGTGAGGCCA..............................................................................................................................................................................271.000.00-1.00----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGCGGC................................................................................................................................................................................251.000.001.00-----------------------------------------------
..............................ACCCGCCTCGGCCTCCCAAAGCGCTGGGAG..............................................................................................................................................................................................301.000.001.00-----------------------------------------------
..........................ATCCACCCGCCTCGGCCTCCCAAAGCGGGGA.................................................................................................................................................................................................311.000.001.00-----------------------------------------------
...........................................................................................................................................................................................................................AATGAGTGAAGATGAAGAACGGC........2321.001.50-----------------------1.00------------------------
..........................................................ATTACAGGCGTGAGCCACCGCGCCCGGGTC..................................................................................................................................................................301.000.001.00-----------------------------------------------
.......................................................................................................................................................................................................................AAGAAATGAGTGAAGATGAAGAACGAGAAAACGA.341.000.00-1.00----------------------------------------------
...................................................CGCTGGGATTACAGGCGTGAGGTA...............................................................................................................................................................................241.000.001.00-----------------------------------------------
...............................CCCGCCTCGGCCTCCCAAAGCTGC...................................................................................................................................................................................................241.000.00--1.00---------------------------------------------
..........................ATCCACCCGCCTCGGCCTCCCAAAGCGCAGGG................................................................................................................................................................................................321.000.00-1.00----------------------------------------------
..............................ACCCGCCTCGGCCTCCCAAAGCGCAGGG................................................................................................................................................................................................281.000.001.00-----------------------------------------------
..........................ATCCACCCGCCTCGGCCTCCCAAAGCGCCGTG................................................................................................................................................................................................321.000.001.00-----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGAGCTGGC.............................................................................................................................................................................281.000.001.00-----------------------------------------------
..........................................................................................................................................................................................................................AAATGAGTGAAGATGAAGAACTAG........241.000.00-------1.00----------------------------------------
...............................................................................................................TGTTGCTTAGCTGAACG..........................................................................................................................171.000.00---1.00--------------------------------------------
.................................................................................................................................................................................................................................TGAAGATGAAGAACGAGAA......1921.001.00---------------------------0.50---------------0.50----
.................................................AGCGCTGGGATTACAGGCGTGAGCCCCCA............................................................................................................................................................................291.000.001.00-----------------------------------------------
...................................................................................................................................................................................................................................AAGATGAAGAACGAGAAAA....1921.001.00----0.50--0.50----------------------------------------
...........................................................................................................................................................................TCTGAGCAGACGCCTCCTTTCTCTTGTAG..................................................291.000.00----------1.00-------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGATCT................................................................................................................................................................................251.000.001.00-----------------------------------------------
.................................................AGCGCTGGGATTACAGGCGTGGAG.................................................................................................................................................................................241.000.00-1.00----------------------------------------------
................................................................................................................................................................................................................................GTGAAGATGAAGAACACTG.......191.000.00------------1.00-----------------------------------
..........................ATCCACCCGCCTCGGCCTCCCAAAGCGCGGCG................................................................................................................................................................................................321.000.001.00-----------------------------------------------
.............................CACCCGCCTCGGCCTCCCAAAGACT....................................................................................................................................................................................................251.000.00--1.00---------------------------------------------
..........................ATCCACCCGCCTCGGCCTCCCAAAGCGGGGT.................................................................................................................................................................................................311.000.00-1.00----------------------------------------------
............................................CCCAAAGCGCTGGGATTACAGGCGCTC...................................................................................................................................................................................271.000.00--1.00---------------------------------------------
.........................................................................................................................................................................................................................GAAATGAGTGAAGATGAA...............1820.500.50-----------------------------------------0.50------
.................................................................................................................................................................................................................................TGAAGATGAAGAACGAGAAAA....2120.500.50----------------------------------0.50-------------
................................................................................................ATTCTTGGGAACACTTGTTGCTTAG.................................................................................................................................2520.500.50------0.50-----------------------------------------
...............................................................................................................................................................................................................................AGTGAAGATGAAGAACGAG........1920.500.50----0.50-------------------------------------------
............................................................................................................................................................................................................................ATGAGTGAAGATGAAGAACG..........2020.500.50---------0.50--------------------------------------
........................................................................................................................................................................................................................................GAAGAACGAGAAAATGAA1820.500.50---------------------------0.50--------------------
.............................................................................................................................................................................................................................TGAGTGAAGATGAAGAACG..........1920.500.50--------------------------------0.50---------------
................................................................................................................................................................................................................AGTGAGGAAGAAATGAGTGAA.....................2120.500.50---------------------------------0.50--------------
................................................................................................................................................................................................................................GTGAAGATGAAGAACGAGAAAATG..2420.500.50------------------------------------0.50-----------
.....................................................................................................................................................................................................................GGAAGAAATGAGTGAAGATGAAGAA............2520.500.50---------------------------------------0.50--------
.............................................................................................................................AGCGGAGCCCGCATCCTGC..........................................................................................................1920.500.50-------------------------------------0.50----------
....................................................................................................................................................................................................................................AGATGAAGAACGAGAAAAT...1920.500.50--------------------------------------0.50---------
...........................................................................................................................................................................................................................AATGAGTGAAGATGAAGAACGAGA.......2420.500.50------------------------------------------0.50-----
...........................................................................................................................................................................TCTGAGCAGACGCCTCCTTTCT.........................................................2220.500.50-----------------------------------0.50------------
............................................................................................................................................................................CTGAGCAGACGCCTCC..............................................................1640.500.50--------------------------------------------0.250.25--
.............................................................................................................................................................................TGAGCAGACGCCTCC..............................................................1550.200.20----------------------------------------------0.20-
............................................................................................................................................................................CTGAGCAGACGCCTC...............................................................1550.200.20-----------------------------------------------0.20

Antisense strand
TGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGCGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTGCATATCCATTCTTGGGAACACTTGTTGCTTAGCTGAAGCGGAGCCCGCATCCTGCCTGTGGCAGCACTCGCCCCGGTGCTGGTCTGAGCAGACGCCTCCTTTCTCTTGCAGAAGAAGTAAGTGAGGAAGAAATGAGTGAAGATGAAGAACGAGAAAATGAA
............................................(((((((.((((((......(((....)))......))))))))............)))))......(((((((..((.((.((((...)))).))..))....)))))))...............................................................................................
............................................45............................................................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.................................................AGCGCTGGGATTACAGGCGTACAG................................................................................................................................................................................. 242.000.002.00-----------------------------------------------
................................................................GGCGTGAGCCACCGCGCCCGGCCTGT................................................................................................................................................................ 262.000.002.00-----------------------------------------------
..................................................GCGCTGGGATTACAGGGGG..................................................................................................................................................................................... 191.000.00-------------1.00----------------------------------
...............................................................................................................................................................................................................AAGTGAGGAAGAAATTACC........................ 191.000.00----------------------1.00-------------------------
.................................................TCACGCCTGTAATCCCAGCGCT................................................................................................................................................................................... 2201.001.00------------------1.00-----------------------------
...................................................................GTGAGCCACCGCGCCCGGCCCAAA............................................................................................................................................................... 241.000.00--------------1.00---------------------------------
...............................................................AGGCGTGAGCCACCGCGCCCGGCCTCC................................................................................................................................................................ 271.000.001.00-----------------------------------------------
..................................................................CGTGAGCCACCGCGCCCGGCCTGTG............................................................................................................................................................... 251.000.001.00-----------------------------------------------
..............................ACCCGCCTCGGCCTCCCATTTC...................................................................................................................................................................................................... 221.000.001.00-----------------------------------------------
......................................................................................................................................................CAGCACTCGCCCCGGGA................................................................................... 171.000.00------------------------1.00-----------------------
..............................ACCCGCCTCGGCCTCCCGGG........................................................................................................................................................................................................ 201.000.00--------------------------1.00---------------------
...............................................................AGGCGTGAGCCACCGCGCCCGGCAA.................................................................................................................................................................. 251.000.00----1.00-------------------------------------------
..................................................................CGTGAGCCACCGCGCCCGGCCTGCATACT........................................................................................................................................................... 291.000.001.00-----------------------------------------------
..............................................................CAGGCGTGAGCCACCGCGACA....................................................................................................................................................................... 211.000.00-----------------------------1.00------------------
.................................................ACGCCTGTAATCCCAGCGCT..................................................................................................................................................................................... 2001.001.00-----------------1.00------------------------------
..................................................................CGTGAGCCACCGCGCCCGGCCTAA................................................................................................................................................................ 241.000.00-------------------------1.00----------------------
............................CCACCCGCCTCGGCCTCCCAACCCC..................................................................................................................................................................................................... 251.000.001.00-----------------------------------------------
..................................................................................................................................................................................................................................GAAGATGAAGAACGATCG...... 181.000.00--------------------1.00---------------------------
...................................................................................................................................GCCCGCATCCTGCCTATAG.................................................................................................... 191.000.00-----------1.00------------------------------------
................................................................................................................................................................................................................................GTGAAGATGAAGAACGACTTC..... 211.000.00---------------1.00--------------------------------
...........................TCCACCCGCCTCGGCCTCCCAGCAG...................................................................................................................................................................................................... 251.000.00-1.00----------------------------------------------
...................................CCTCGGCCTCCCAAAGCGCTGGGAGT............................................................................................................................................................................................. 261.000.00-------------------1.00----------------------------
................................................................GGCGTGAGCCACCGCGCCCGGCCTGCACG............................................................................................................................................................. 291.000.00-1.00----------------------------------------------
............................................................TACAGGCGTGAGCCACCGCGCCCGGCCTCCC............................................................................................................................................................... 311.000.001.00-----------------------------------------------
...........................TCCACCCGCCTCGGCCTCCCAAGGGC..................................................................................................................................................................................................... 261.000.001.00-----------------------------------------------
................................................................GGCGTGAGCCACCGCGCCCGGCCTGCATC............................................................................................................................................................. 291.000.001.00-----------------------------------------------
............................CCACCCGCCTCGGCCTCCCACCCC...................................................................................................................................................................................................... 241.000.00-1.00----------------------------------------------
.....................................................................................................................................................................................................................CGTTCTTCATCTTCACTCATTTCTTCC.......... 2720.500.500.50-----------------------------------------------