ID: uc001aff.1_intron_2_0_chr1_1323446_r.5p
GENE: CCNL2(3)
chr1:1325410-1325659-


(1)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(22)
CELL-LINE 		(1)
CERVIX 		(2)
LIVER 		(4)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CACACAGGTGCTGGATGGTACCTCGGGGTTCTCTCCTGCCCCCAAGCTGGGTGAGTCTGTTAGAGTGCAGGAATCCACTCCCCACAAAGGCAAAGACTGGTGACTCTCCCCCGCCTCCATTCTGGGGTATGTGCTCCTTCCAGACATTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCTGTCACCCAGGCTGGAGTATGGTGGTGTGATCGCAGCTCACTGCAGCTTCCAACTCCTGGATTCAAGTGAT
........................................................(((..((((..((..........(((((.((.((........((((.........)))).)).)).)))))..))..)).))..)))...........................................................................................................
........................................................57.................................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR553576(SRX182782)
source: Testis. (testes)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343336
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTACTC.................................................................................2618.000.004.00-1.0013.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTACTC..................................................................................2513.000.007.00-1.005.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTAAAG..................................................................................2511.000.002.007.002.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTG..................................................................................2511.000.003.002.003.00--3.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTAAAG................................................................................2711.000.002.004.004.00-1.00------------------------------------
.............................................................AGAGTGCAGGAATCCAAA...........................................................................................................................................................................1810.000.00-------6.00-------2.00----1.00----------1.00---------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTAAAG.................................................................................269.000.001.003.002.00--3.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTAAAG...................................................................................247.000.00-3.004.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCT...................................................................................247.000.002.001.001.001.00-1.001.00----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTACCC.................................................................................267.000.007.00----------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCCAG................................................................................266.000.00-1.002.00-2.001.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTACAG.................................................................................266.000.001.002.001.00-1.001.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCG..................................................................................256.000.00-1.004.00-1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTAATT.................................................................................266.000.00-4.002.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTACCC................................................................................276.000.006.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGGGG................................................................................276.000.006.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTTG.................................................................................266.000.002.00-1.00-2.001.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTACTC...................................................................................245.000.002.00--3.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTATT...................................................................................245.000.00-3.001.00-1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTATT....................................................................................235.000.00-3.001.00-1.00------------------------------------
..........CTGGATGGTACCTCGGGGTTCTCT........................................................................................................................................................................................................................2415.005.00--------5.00--------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTAAT..................................................................................255.000.00-2.001.00-1.001.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTATTG................................................................................275.000.00-1.002.00-1.001.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTATG..................................................................................254.000.00-2.002.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTAATT..................................................................................254.000.00-4.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTAAAT.................................................................................264.000.00-2.002.00--------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTCAAG..................................................................................244.000.00-1.00--1.002.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCG...................................................................................244.000.00--1.00-1.002.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTATTG.................................................................................263.000.00-1.002.00--------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCTAG................................................................................263.000.00----2.001.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCCCC................................................................................273.000.001.00--2.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCCCC.................................................................................263.000.003.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTATTT.................................................................................263.000.00-2.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTAACT..................................................................................253.000.00--1.001.001.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCAA.................................................................................263.000.00-3.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTAATG................................................................................273.000.00-2.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTAT....................................................................................233.000.00--3.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGGG.................................................................................263.000.002.00-1.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTACC..................................................................................253.000.003.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTTT.................................................................................263.000.001.00-1.00---1.00----------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTCCAG..................................................................................242.000.00-2.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTATC.................................................................................262.000.001.001.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTATTC.................................................................................262.000.00-1.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTATTT...................................................................................242.000.00-1.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTATG....................................................................................232.000.00-1.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTAGG..................................................................................252.000.001.00--1.00-------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA.......................................................................272.000.00----------2.00------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCTAG................................................................................272.000.00-1.00--1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCGGC..................................................................................252.000.002.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCCC..................................................................................252.000.001.00--1.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTATAG..................................................................................252.000.00-1.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCGAG................................................................................272.000.001.00-1.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTAATT...................................................................................242.000.00-1.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTAAAA................................................................................272.000.001.00-1.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCAAG................................................................................272.000.00-2.00---------------------------------------
.........................................CCAAGCTGGGTGAGTCTGTTAG...........................................................................................................................................................................................2212.002.00------------2.00----------------------------
...............................................................................................................................................................................TCTCTGTCACCCAGGCTGGCCTC....................................................232.000.00---2.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCAAG.................................................................................262.000.00--2.00--------------------------------------
.........................................................................................................................................................................ACAGGGTCTCTGTCACCCAGGCTGGAGCG....................................................292.000.002.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCCC.................................................................................262.000.002.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCGGC................................................................................272.000.00---2.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTATTC..................................................................................252.000.001.00--1.00-------------------------------------
.................................................................................................................................................................................TCTGTCACCCAGGCTGGAGTAAAG.................................................242.000.00-----------2.00-----------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCTCC..................................................................................252.000.001.00-1.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCGGC.................................................................................262.000.002.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTACG..................................................................................252.000.00-1.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCCTG.................................................................................262.000.001.001.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCCTC................................................................................272.000.00--1.001.00-------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCAAG................................................................................262.000.00-1.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTAATG..................................................................................252.000.00-1.001.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCAC.................................................................................262.000.001.00--1.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTACTT................................................................................272.000.00--1.001.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTACCC...................................................................................242.000.002.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCTAG..................................................................................252.000.00-1.00--1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCACT..................................................................................252.000.002.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTATAG...................................................................................242.000.00-2.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCTC.................................................................................262.000.00--1.00-1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTATCG...................................................................................242.000.00-2.00---------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCGGG................................................................................261.000.00------1.00----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGAGACAGGGTT.........................................................................341.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCAA..................................................................................251.000.00-----1.00-----------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTCATG..................................................................................241.000.00-----1.00-----------------------------------
.........................................................................................................................................................................ACAGGGTCTCTGTCACCCAGGCTGGAGTACGG.................................................321.000.00---1.00-------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCCG.................................................................................251.000.00--1.00--------------------------------------
............................................................................................AAGACTGGTGACTCTCCCCC..........................................................................................................................................2011.001.00----------1.00------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGAGAAA..............................................................................291.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTATCA................................................................................271.000.00--1.00--------------------------------------
.....................................................................................................................................................TTTTTTTTTTTTTTTTTGAGACAGGGCTAT.......................................................................301.000.00------1.00----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCCC...................................................................................241.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTATTT..................................................................................251.000.001.00----------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTCCTC..................................................................................241.000.00------1.00----------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCTTA................................................................................261.000.00-----1.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCAAT................................................................................271.000.00-1.00---------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTCTAG..................................................................................241.000.00-----1.00-----------------------------------
...........................................................................................................................................................................................AGGCTGGAGTATGGTAATA............................................191.000.00--------------1.00--------------------------
....................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGACAGGGGCCC.......................................................................311.000.00---1.00-------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGGGG................................................................................261.000.00---1.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCGTG..................................................................................251.000.001.00----------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCACG................................................................................261.000.00----1.00------------------------------------
..............................................................................................................................................GACATTTTTTTTTTTTTTTTTTTTCCC.................................................................................271.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTATA....................................................................................231.000.00-1.00---------------------------------------
.....................................................................................................................................................................................................................AGCTCACTGCAGCTTCCTTT.................201.000.00---1.00-------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG........................................................................261.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGGC.................................................................................261.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCAC...................................................................................241.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTATTG...................................................................................241.000.00--1.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTAACT.................................................................................261.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTATAA.................................................................................261.000.00--1.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTATTC................................................................................271.000.001.00----------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG.......................................................................271.000.001.00----------------------------------------
.........................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC.......................................................................261.000.00---1.00-------------------------------------
..............................................................................................................................................GACATTTTTTTTTTTTTTTTTTTTATAG................................................................................281.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCCCA................................................................................271.000.00--1.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTATAG................................................................................271.000.00--1.00--------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCCGG................................................................................261.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTACCC..................................................................................251.000.00--1.00--------------------------------------
.................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTGAGCCCG.............................................................................281.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTTC.................................................................................261.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCCAA................................................................................271.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTATAG.................................................................................261.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCCG..................................................................................251.000.00-1.00---------------------------------------
.......................................................................................AGGCAAAGACTGGTGACTCTCCCCCGC........................................................................................................................................2711.001.00---------------------------1.00-------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTACAT................................................................................271.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTGG.................................................................................261.000.00-1.00---------------------------------------
............................................................................................AAGACTGGTGACTCTCC.............................................................................................................................................1711.001.00----------1.00------------------------------
..............................................................................................................................................GACATTTTTTTTTTTTTTTTTTTAAGC.................................................................................271.000.00----1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCGG.................................................................................261.000.001.00----------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGTTGG...............................................................................271.000.001.00----------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG.......................................................................281.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCTAC................................................................................271.000.001.00----------------------------------------
...........................................................................................AAAGACTGGTGACTCTCCCC...........................................................................................................................................2011.001.00--------------1.00--------------------------
...........................................................................................................................................................................................................GTGTGATCGCAGCTCAGAAA...........................201.000.00-------------------------1.00---------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTACCG.................................................................................261.000.00-----1.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTATAT...................................................................................241.000.00-1.00---------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTCCAT..................................................................................241.000.00------1.00----------------------------------
..........................................................................................................................................................................................CAGGCTGGAGTATGGTACC.............................................191.000.00----------------------------------1.00------
.........................................................................................................................................................................................CCAGGCTGGAGTATGGTC...............................................181.000.00--------------------------1.00--------------
.ACACAGGTGCTGGATGGTA......................................................................................................................................................................................................................................1911.001.00---------1.00-------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTC..................................................................................251.000.00--1.00--------------------------------------
....................................................................................CAAAGGCAAAGACTGGTGACTCTCCC............................................................................................................................................2611.001.00---------1.00-------------------------------
...................................................................................................................................................TTTTTTTTTTTTTTTTTTTGAGACAGGCCCG........................................................................311.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTT..................................................................................251.000.00------1.00----------------------------------
......................................................................................................................................................TTTTTTTTTTTTTTTTGAGACAGGGGCCG.......................................................................291.000.00---1.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCTTC................................................................................271.000.00--1.00--------------------------------------
........................................................................................................................................................................................CCCAGGCTGGAGTATGGTGGGACA..........................................241.000.00---------1.00-------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTACCT.................................................................................261.000.00---1.00-------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGGGGG...............................................................................271.000.001.00----------------------------------------
..............................................................GAGTGCAGGAATCCAGCTG.........................................................................................................................................................................191.000.00-----------------------1.00-----------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGAGAAAAG............................................................................301.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCTTG................................................................................271.000.00----1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTGT.................................................................................261.000.00----1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTACTG.................................................................................261.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTAGTC.................................................................................261.000.00---1.00-------------------------------------
..........................................................................................................................................TCCAGACATTTTTTTTTTTTTTTTTTTTTTT.................................................................................311.000.00-----1.00-----------------------------------
.........................................................................................................................................TTCCAGACATTTTTTTTTTTTTTTTTTGAG...................................................................................301.000.00---1.00-------------------------------------
.........................................................TGTTAGAGTGCAGGAATCC..............................................................................................................................................................................1911.001.00---------------------------------1.00-------
..............ATGGTACCTCGGGGTTCTCTCCTGCCCCCA..............................................................................................................................................................................................................3011.001.00---1.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGAGCCC..............................................................................291.000.001.00----------------------------------------
.........................................................................................................................................................................ACAGGGTCTCTGTCACCCAGGCTGGAGCGC...................................................301.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCTTA..................................................................................251.000.00------1.00----------------------------------
.........................................................................................................................................................................ACAGGGTCTCTGTCACCCAGGCTGGAGTAGG..................................................311.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTATAT..................................................................................251.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCTCT................................................................................271.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTATG...................................................................................241.000.00--1.00--------------------------------------
..........................................................................................................................................................................................CAGGCTGGAGTATGGTGGGCC...........................................211.000.00---------1.00-------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCTAT.................................................................................261.000.00--1.00--------------------------------------
....................CCTCGGGGTTCTCTCCTGCCCCCAAGCTGG........................................................................................................................................................................................................3011.001.00-----------------------------------1.00-----
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCAG...................................................................................241.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCACC..................................................................................251.000.00---1.00-------------------------------------
..............................................................................................................................................GACATTTTTTTTTTTTTTTTTCA.....................................................................................231.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCACT................................................................................271.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTACAC...................................................................................241.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCTC...................................................................................241.000.00--1.00--------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTATGT................................................................................271.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCTAC..................................................................................251.000.001.00----------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGCGGC...............................................................................271.000.00---1.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCCCC..................................................................................251.000.00---1.00-------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCAC..................................................................................251.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCACT.................................................................................261.000.001.00----------------------------------------
........................................................................................................................................................................................CCCAGGCTGGAGTATGGTGTTTA...........................................231.000.00-----------------------------1.00-----------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTCCCT..................................................................................241.000.00-----1.00-----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTATAT.................................................................................261.000.00-1.00---------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCATA..................................................................................251.000.00--1.00--------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTGCGTT...............................................................................271.000.00------1.00----------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTCCAC................................................................................271.000.001.00----------------------------------------
...................................................................................................................................................................................TGTCACCCAGGCTGGAGTATGGTGTGC............................................271.000.00---1.00-------------------------------------
.............................................................................................................................................AGACATTTTTTTTTTTTTTTTTCTTG...................................................................................261.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCTGC..................................................................................251.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCGGG.................................................................................261.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCAAG..................................................................................251.000.00--1.00--------------------------------------
.................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTGAGCGGG.............................................................................281.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGAGTC...............................................................................281.000.001.00----------------------------------------
.................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTGAGCCC..............................................................................271.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTCAAA.................................................................................261.000.00-1.00---------------------------------------
................................................................................................................................................CATTTTTTTTTTTTTTTTTTTTCTCG................................................................................261.000.00----1.00------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTCCTC..................................................................................251.000.00-1.00---------------------------------------
..............................................................................................................................................GACATTTTTTTTTTTTTTTCATG.....................................................................................231.000.00---------1.00-------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGGGTG...............................................................................281.000.001.00----------------------------------------
...............................................................................................................................................ACATTTTTTTTTTTTTTTTTTTTGGGC................................................................................271.000.001.00----------------------------------------
......................................................GTCTGTTAGAGTGCAATGG.................................................................................................................................................................................1960.670.17------------------------------------0.330.17--0.17
....CAGGTGCTGGATGGT.......................................................................................................................................................................................................................................1550.200.20--------------------------------------0.20--
........................................................................................................................................CTTCCAGACATTTTTTTTT...............................................................................................1950.200.20------0.20----------------------------------
......................................................GTCTGTTAGAGTGCA.....................................................................................................................................................................................1560.170.17-------------------------------------0.17---
......................................................GTCTGTTAGAGTGCAATG..................................................................................................................................................................................1860.170.17---------------------------------------0.17-
......................................................GTCTGTTAGAGTGCAATTG.................................................................................................................................................................................1960.170.17------------------------------------0.17----
.....................................................................................................................................................................................TCACCCAGGCTGGAGTATGGTGGTGTGATC.......................................3090.110.11------0.11----------------------------------

Antisense strand
CACACAGGTGCTGGATGGTACCTCGGGGTTCTCTCCTGCCCCCAAGCTGGGTGAGTCTGTTAGAGTGCAGGAATCCACTCCCCACAAAGGCAAAGACTGGTGACTCTCCCCCGCCTCCATTCTGGGGTATGTGCTCCTTCCAGACATTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCTGTCACCCAGGCTGGAGTATGGTGGTGTGATCGCAGCTCACTGCAGCTTCCAACTCCTGGATTCAAGTGAT
........................................................(((..((((..((..........(((((.((.((........((((.........)))).)).)).)))))..))..)).))..)))...........................................................................................................
........................................................57.................................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189785SRR553576(SRX182782)
source: Testis. (testes)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343336
..........................................................................................................................................................................CAGGGTCTCTGTCACCCAGGCTGGAGTCCCC................................................. 312.000.002.00----------------------------------------
.................................................................................................................................................................................................................TCGCAGCTCACTGCAGCTG...................... 192.000.00---2.00-------------------------------------
..............................................................................................................................................GACATTTTTTTTTTTTTTTGTGT..................................................................................... 231.000.00-------------1.00---------------------------
...............................................................................................................................................AAAAAAAAAAAAAAAAAAATGT..................................................................................... 2201.001.00------------------------------1.00----------
............................................................................................................CCCCGCCTCCATTCTCAC............................................................................................................................ 181.000.00---------------------1.00-------------------
....................................................................................................................................................................................CACCATACTCCAGCCTGGGTGAC............................................... 2301.001.00-------------------1.00---------------------
.............................................................................................................................................................................................................TGGAAGCTGCAGTGAGCTGCGATCAC................... 2611.001.00---1.00-------------------------------------
........................................................................................................................................................................GACAGGGTCTCTGTCACCCAGGCTGGAGTCGC.................................................. 321.000.00---1.00-------------------------------------
..........................................................................................................TCCCCCGCCTCCATTCC............................................................................................................................... 171.000.00---1.00-------------------------------------
..............................................................................................................................................GACATTTTTTTTTTTTTTTTTGGGT................................................................................... 251.000.00-------------1.00---------------------------
...............................................................................................................................................AAAAAAAAAAAAAAAAAATGT...................................................................................... 2101.001.00----------------------1.00------------------
..........................................................................................................TCCCCCGCCTCCATTTC............................................................................................................................... 171.000.00------------------------1.00----------------
......................................................................................................ACTCTCCCCCGCCTCCATTCTGGGGGA......................................................................................................................... 271.000.00----------------------------1.00------------
........................................................................................................................................................................................................................TCACTGCAGCTTCCAACTCATT............ 221.000.00----------------1.00------------------------
............................................................................................................................................................................GGGTCTCTGTCACCCAGGCTGGAGTGACG................................................. 291.000.001.00----------------------------------------
....................................................................................................................................................................................................................CAGCTCACTGCAGCTTCCTGGC................ 221.000.001.00----------------------------------------
............................................................................................................CCCCGCCTCCATTCTTC............................................................................................................................. 171.000.00-----------------1.00-----------------------
.........................................................................................................................................................................................................................................ATCACTTGAATCCAGGA 1701.001.00------------------1.00----------------------
..........................................................................................................................................................................................................AGCTGCAGTGAGCTGCGATCACACC....................... 2511.001.001.00----------------------------------------
......................................................................................................................................................................................................................GCTCACTGCAGCTTCCAACTCCCC............ 241.000.001.00----------------------------------------
..................................................................................................................................................................................CTGTCACCCAGGCTGGAGTATGACG............................................... 251.000.001.00----------------------------------------
.............................................................................................................................................AGACATTTTTTTTTTTTTTTTCCC..................................................................................... 241.000.00-------1.00---------------------------------
..................................................................................................................................................................................................................TGGAAGCTGCAGTGAGCTGCG................... 2140.250.25---0.25-------------------------------------