ID: uc001aea.2_intron_18_0_chr1_1237427_r.3p
GENE: ACAP3(3)
chr1:1237377-1237626-


(1)
AGO1.ip 		(2)
AGO2.ip 		(3)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(15)
CELL-LINE 		(4)
CERVIX 		(3)
HEART 		(1)
KIDNEY 		(4)
LIVER 		(3)
OTHER 		(18)
SKIN 		(1)
UTERUS

Sense strand
GGGGTGACAGCCATCGCCTCTGAGTGCCAACTCAGGCCTGGGGGCTGCTCCCCTGACCCCCTTGAGGCCAGCCCTGCAGGGTGGGACCCGCCCCTGCATCTGGGCCTGGGGGCAGTGCCCTCTGCTGGTGAGGATGGGGCCTTCCATCTGGGGCTCTTTCGGGACAGACCCCAAGGATCTCTGCCCGCCTCTGCCCCCAGATCCTGTTTGACCAGGCCCAGAGGTCCGTGCGGCAGCAGCTCCAGAGCTT
.................................................................................................................................................(((((((((.....((((.((((((....))...)))))))).....))))).))))................................................
.............................................................................................................................................142..............................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		GSM532874(GSM532874)
G699T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................................TCTGGGGCTCTTTCGGGACAGA..................................................................................22136.0036.003.00--1.00--1.001.001.001.002.00---1.00-1.00--1.001.001.00---1.00-1.00-1.00-1.001.001.001.001.001.00-1.00---1.001.00---1.001.001.001.001.00-1.00-1.001.00-1.00----
.................................................................................................................................................ATCTGGGGCTCTTTCGGGACAGA..................................................................................23117.0017.001.007.003.00--1.00-----1.00---1.00------1.001.00------1.00--------------------------------
.................................................................................................................................................ATCTGGGGCTCTTTCGGGACAG...................................................................................2215.005.00---1.00---1.00----------1.00-----1.00---------------------------1.00----------
.................................................................................................................................................ATCTGGGGCTCTTTCGGGAC.....................................................................................2013.003.00--------------------------1.00-1.00----------------------------1.00-----
.....................................................................................................................................................................................TGCCCGCCTCTGCCCCCAGAGA...............................................223.000.00--3.00------------------------------------------------------------
.................................................................................................................................................ATCTGGGGCTCTTTCGGGACAGAT.................................................................................2413.0017.00--------1.00----2.00-------------------------------------------------
..................................................................................................................................................TCTGGGGCTCTTTCGGGACAGAA.................................................................................2313.0036.00----3.00----------------------------------------------------------
....................................................................................................................................................TGGGGCTCTTTCGGGACAGA..................................................................................2013.003.00------------2.00-----------------------------------------1.00--------
.............................................................................................................................TGGTGAGGATGGGGCGA............................................................................................................172.000.00---------1.00-----------------------------------1.00-----------------
.................................................................................................................................................ATCTGGGGCTCTTTCGGGACA....................................................................................2112.002.00------1.00--------1.00-----------------------------------------------
.................................................................................................................................................ATCTGGGGCTCTTTCGCGA......................................................................................191.000.001.00--------------------------------------------------------------
................................................................................................................................................CATCTGGGGCTCTTTCGGGACAGT..................................................................................2411.001.00--------------1.00------------------------------------------------
................................................................................................................................................CATCTGGGGCTCTTTCGGGAC.....................................................................................2111.001.00---1.00-----------------------------------------------------------
..................................................................................................................................................TCTGGGGCTCTTTCGGGACAGATT................................................................................2411.0036.00----------------------------------------------1.00----------------
.................................................................................................................................................ATCTGGGGCTCTTTCGGGACAGAAA................................................................................2511.0017.00-----------------------------------------------------------1.00---
..................................................................................................................................................................................................................ACCAGGCCCAGAGGTCCGTGCGGCAGCA............2811.001.001.00--------------------------------------------------------------
.............................................................................................................................................................................................................................AGGTCCGTGCGGCAGCAGCTCCAGAGGC.281.000.00----------------------------------------1.00----------------------
..................................................................................................................................................................................................................ACCAGGCCCAGAGGTCCGTGCGG.................2311.001.00-----1.00---------------------------------------------------------
.......................................................................................................................................................................................................................GCCCAGAGGTCCGTGGATC................191.000.00-----1.00---------------------------------------------------------
................................................................................................................................................CATCTGGGGCTCTTTCGGGACAG...................................................................................2311.001.00--------------------------------------------1.00------------------
.................................................................................................................................................ATCTGGGGCTCTTTCGGGA......................................................................................1911.001.00-----------1.00---------------------------------------------------
..................................................................................................................................................TCTGGGGCTCTTTCGGGACCGA..................................................................................221.000.001.00--------------------------------------------------------------
................................................................................................................................................CATCTGGGGCTCTTTCGGGACA....................................................................................2211.001.001.00--------------------------------------------------------------
..............................................................................................................................................................................................................TTTGACCAGGCCCAGAGGTCCG......................2211.001.00---------------------------------------1.00-----------------------
.......................................................................................................................................................................................CCCGCCTCTGCCCCCCGGC................................................191.000.00-----------------1.00---------------------------------------------
.........................................GGGCTGCTCCCCTGACC................................................................................................................................................................................................1730.330.33------------------------------------------------------------0.33--
.................................................................................................................................................................................................CCCCCAGATCCTGTT..........................................1560.170.17--------------------------------------------------------------0.17

Antisense strand
GGGGTGACAGCCATCGCCTCTGAGTGCCAACTCAGGCCTGGGGGCTGCTCCCCTGACCCCCTTGAGGCCAGCCCTGCAGGGTGGGACCCGCCCCTGCATCTGGGCCTGGGGGCAGTGCCCTCTGCTGGTGAGGATGGGGCCTTCCATCTGGGGCTCTTTCGGGACAGACCCCAAGGATCTCTGCCCGCCTCTGCCCCCAGATCCTGTTTGACCAGGCCCAGAGGTCCGTGCGGCAGCAGCTCCAGAGCTT
.................................................................................................................................................(((((((((.....((((.((((((....))...)))))))).....))))).))))................................................
.............................................................................................................................................142..............................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		GSM532874(GSM532874)
G699T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................................................................................GGATCTCTGCCCGCCAAA.......................................................... 181.000.00-------------------------------------1.00-------------------------
.....................................................................................................................................................................................TGCCCGCCTCTGCCCTGG................................................... 181.000.00-----------------------------------------1.00---------------------
.........................................................................................................................................................................GGGCAGAGATCCTTGGG................................................................ 1730.330.33------0.33--------------------------------------------------------
..................................................................................................................................................................................GGGCAGAGGCGGGCAGAG...................................................... 1840.250.25-------------------------------------------------------------0.25-