ID: uc001aea.2_intron_15_0_chr1_1235449_r
GENE: ACAP3(6)
chr1:1235399-1235587-


(2)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(4)
HELA 		(6)
LIVER 		(2)
OTHER 		(15)
SKIN 		(1)
XRN.ip

Sense strand
GGCAGATCAATGTTCTGCAGGCCAAGAAGAAGTTTGAGATCCTGGACTCTGTGAGTGCGTGGGGGCTGCCCCTGAGCACAGGCTGCATGTTGGGGGCTGGACCGGGTGTGCTTGGGCCTCACCTGTGCTGCCCCCGCAGATGCTGTCCTTCATGCACGCCCAGTCCAGCTTCTTCCAGCAGGGCTACAG
..................................................................................((((.....((((((.((..((((((.((....))..))))))..))))))))))))..................................................
.................................................................................82.......................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189787SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
......................................................................................ATGTTGGGGGCTGGACCGGGTGTGT..............................................................................258.000.007.00-----------------------------------------1.00----------------------
.......................................................................................TGTTGGGGGCTGGACCGGGTGT................................................................................2216.006.003.00---------------2.00--------1.00---------------------------------------
.......................AAGAAGAAGTTTGAGATCCTGGACTCT...........................................................................................................................................2715.005.00--1.00--------------1.00--1.00-------------1.00------------------1.00-----------
........................AGAAGAAGTTTGAGATCCTGG................................................................................................................................................2114.004.00----3.00---------------------------------------------------1.00--------
.................................................................CTGCCCCTGAGCACAGGC..........................................................................................................1823.003.00---2.50----------------------------------------------------------0.50--
................................................................................................................TGGGCCTCACCTGTGCTGC..........................................................1913.003.00------3.00----------------------------------------------------------
...........................................................................................................................................ATGCTGTCCTTCATGCACGC..............................2013.003.00-3.00---------------------------------------------------------------
.......................................................................................TGTTGGGGGCTGGACCGGGTGTAAA.............................................................................2512.006.00---------1.00----------------1.00--------------------------------------
.........................................................................................TTGGGGGCTGGACCGGGTGTGCTTGGGCCC......................................................................302.000.00---------------2.00-------------------------------------------------
............................GAAGTTTGAGATCCTGGACTCTGTGAGTGCAA.................................................................................................................................322.000.00--------------2.00--------------------------------------------------
...................................................................................TGCATGTTGGGGGCTGGACCGGGTG.................................................................................2512.002.00----------2.00------------------------------------------------------
.............TCTGCAGGCCAAGAAGAAGTTTGAGA......................................................................................................................................................2612.002.00-2.00---------------------------------------------------------------
............................................................................................................................................TGCTGTCCTTCATGCACGCCCAGT.........................2412.002.00----------------------1.00-----1.00------------------------------------
......................................................................................................................TCACCTGTGCTGCCCCCGCATT.................................................222.000.002.00----------------------------------------------------------------
..................................................................................CTGCATGTTGGGGGCTGGACC......................................................................................2112.002.00-------------2.00---------------------------------------------------
.........ATGTTCTGCAGGCCAAGAAGA...............................................................................................................................................................2112.002.00--2.00--------------------------------------------------------------
.......................................................................................TGTTGGGGGCTGGACCGGGTGTGT..............................................................................2412.001.001.00---------------------------------------------1.00------------------
......................................................................................ATGTTGGGGGCTGGACCGGGCG.................................................................................222.000.00-----2.00-----------------------------------------------------------
.........................GAAGAAGTTTGAGATCCTGGACTCTGTGA.......................................................................................................................................2912.002.00-------2.00---------------------------------------------------------
.......................................................................................TGTTGGGGGCTGGACCGGGAA.................................................................................2111.001.00---------------------------------------------------1.00-------------
.....................CCAAGAAGAAGTTTGAGATCCTGGACTCTG..........................................................................................................................................3011.001.00-------------------------------------------------------1.00---------
.......................................................................................TGTTGGGGGCTGGACCGGGTGTGTAT............................................................................2611.001.00-------------------------------------------1.00---------------------
...............................GTTTGAGATCCTGGACTCT...........................................................................................................................................1911.001.00---------1.00-------------------------------------------------------
......................................................................................ATGTTGGGGGCTGGACCGGGTGT................................................................................2311.001.00-----------------------------1.00-----------------------------------
....................GCCAAGAAGAAGTTTG.........................................................................................................................................................1621.001.00---------------------------------1.00-------------------------------
............TTCTGCAGGCCAAGAAGAAGTT...........................................................................................................................................................2211.001.00--------1.00--------------------------------------------------------
..........................................................................................................................................................CACGCCCAGTCCAGCTTCTTC..............2111.001.00------------------1.00----------------------------------------------
......................................................................................ATGTTGGGGGCTGGACCGGTTGT................................................................................231.000.00---------------------1.00-------------------------------------------
......................................................................................ATGTTGGGGGCTGGACCGGGTGTGA..............................................................................251.000.00-----------------1.00-----------------------------------------------
..........................AAGAAGTTTGAGATCCTGGACT.............................................................................................................................................2211.001.00----------------------------------------1.00------------------------
..................................................................................................................................................CCTTCATGCACGCCCAGTCCAGCTTC.................2611.001.00------------------------------------------------------1.00----------
...........................................................................................GGGGGCTGGACCGGGTGGCT..............................................................................201.000.00-------------------------------1.00---------------------------------
.......................................................................................TGTTGGGGGCTGGACCGGGTAAAC..............................................................................241.000.00---------1.00-------------------------------------------------------
.......CAATGTTCTGCAGGCCAAGAAGAAGTTT..........................................................................................................................................................2811.001.00--------1.00--------------------------------------------------------
..........................................................................................TGGGGGCTGGACCGGGTGAAA..............................................................................211.000.00--------------------------------------1.00--------------------------
......................................................................................................................TCACCTGTGCTGCCCCCGCAGAA................................................231.000.00------------------------------------------------1.00----------------
..........................AAGAAGTTTGAGATCCTGGAC..............................................................................................................................................2111.001.00------------------------------------------------------------1.00----
........AATGTTCTGCAGGCCAAGAAGAAGTTTG.........................................................................................................................................................2811.001.00-----------------------------------1.00-----------------------------
......................................................................................ATGTTGGGGGCTGGACCGGGTGTAA..............................................................................2511.001.00-----------------------------------------1.00-----------------------
............................GAAGTTTGAGATCCTGGACTC............................................................................................................................................2111.001.00---1.00-------------------------------------------------------------
.......................................................................................TGTTGGGGGCTGGACCGGGTG.................................................................................2111.001.00-------------------------------------------------1.00---------------
....................................................................................GCATGTTGGGGGCTGGACCG.....................................................................................2011.001.00--1.00--------------------------------------------------------------
..........................................................................................................................................................CACGCCCAGTCCAGCTTCTTCCAGCAG........2711.001.00-------1.00---------------------------------------------------------
.......................................................................................TGTTGGGGGCTGGACCGGGTGTGA..............................................................................2411.001.00--------------------------------------------1.00--------------------
......................................................................................................................TCACCTGTGCTGCCCCCGCAGT.................................................221.000.001.00----------------------------------------------------------------
.............................AAGTTTGAGATCCTGGACTCTA..........................................................................................................................................221.000.00--1.00--------------------------------------------------------------
.........................GAAGAAGTTTGAGATCCTGGACTC............................................................................................................................................2411.001.00--1.00--------------------------------------------------------------
...............................GTTTGAGATCCTGGACTCTATGC.......................................................................................................................................2311.001.00----------------------------------------------------------1.00------
.........ATGTTCTGCAGGCCAAGAAG................................................................................................................................................................2011.001.00--------------------------------------------------1.00--------------
.......................................................................................TGTTGGGGGCTGGACCGGG...................................................................................1911.001.00-----------------------1.00-----------------------------------------
......................................................................................................CGGGTGTGCTTGGGCCTCACCTGTGCTGCCCCCGCAGATGCTGTCCTTCATGCACGCCCAGT.........................6211.001.00-------------------1.00---------------------------------------------
.......................................................................................................................................GCAGATGCTGTCCTTATCT...................................191.000.00--------1.00--------------------------------------------------------
...........................................................................................................................................ATGCTGTCCTTCATGCACGCCAAGT.........................251.000.00-1.00---------------------------------------------------------------
.......................................................................................TGTTGGGGGCTGGACCGGGTGTG...............................................................................2311.001.00-------------------------------------1.00---------------------------
.....ATCAATGTTCTGCAGGCCAAGAAGAAGTTTGA........................................................................................................................................................3211.001.00----------------------------------------------------1.00------------
.......CAATGTTCTGCAGGCCAAGA..................................................................................................................................................................2011.001.00--------------------------------1.00--------------------------------
......................................ATCCTGGACTCTGTGAGAATG..................................................................................................................................211.000.00-----1.00-----------------------------------------------------------
..............................................................................................................................GCTGCCCCCGCAGATGGGTG...........................................201.000.00---------------------------1.00-------------------------------------
...........GTTCTGCAGGCCAAGGATC...............................................................................................................................................................191.000.00---------------------------------------1.00-------------------------
.....................................................................................CATGTTGGGGGCTGGACCGGGTGTTT..............................................................................261.000.00------------------------1.00----------------------------------------
.....ATCAATGTTCTGCAGGCCAAGA..................................................................................................................................................................2211.001.00-----------------------------------------------1.00-----------------
.......................................................................................TGTTGGGGGCTGGACCGGGTGTGTTT............................................................................2611.001.00-----------1.00-----------------------------------------------------
.............................AAGTTTGAGATCCTGGACTCTGTGA.......................................................................................................................................2511.001.00-----------1.00-----------------------------------------------------
.....................CCAAGAAGAAGTTTGAGATCCTGGACTCTAT.........................................................................................................................................311.000.00------------------------------------1.00----------------------------
............................GAAGTTTGAGATCCTGGACTCT...........................................................................................................................................2211.001.00---------------------------------------------1.00-------------------
...........GTTCTGCAGGCCAAGAAG................................................................................................................................................................1820.500.50-------------------------------------------------------------0.50---
...............................GTTTGAGATCCTGGACT.............................................................................................................................................1730.330.33------------------0.33----------------------------------------------
..........................................................................................................................................GATGCTGTCCTTCATG...................................1640.250.25----------------------------------------------------------------0.25

Antisense strand
GGCAGATCAATGTTCTGCAGGCCAAGAAGAAGTTTGAGATCCTGGACTCTGTGAGTGCGTGGGGGCTGCCCCTGAGCACAGGCTGCATGTTGGGGGCTGGACCGGGTGTGCTTGGGCCTCACCTGTGCTGCCCCCGCAGATGCTGTCCTTCATGCACGCCCAGTCCAGCTTCTTCCAGCAGGGCTACAG
..................................................................................((((.....((((((.((..((((((.((....))..))))))..))))))))))))..................................................
.................................................................................82.......................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189787SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................................CAGTCCAGCTTCTTCCATA.......... 191.000.00---------------------------------------------------------1.00-------
.........................................................................................................GTGTGCTTGGGCCTCGTTG................................................................. 191.000.00------------1.00----------------------------------------------------
................................................................................CACCCGGTCCAGCCCCCAACATGCAGCC................................................................................. 2811.001.00-----------------------------------------------------------1.00-----
............................................................GGGGGCTGCCCCTGACCCG.............................................................................................................. 191.000.00------------1.00----------------------------------------------------
.......................................................................................................................................................................TGTAGCCCTGCTGGAAGAAGC. 2111.001.00------------------------------1.00----------------------------------
........................................................................................................................................CATGAAGGACAGCATCTG................................... 1820.500.50---------------------------------------------------------------0.50-