ID: uc001aea.20
GENE: ACAP3(1)
chr1:1238612-1238861-


(2)
AGO2.ip 		(1)
B-CELL 		(10)
BREAST 		(24)
CELL-LINE 		(4)
CERVIX 		(2)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
CCACCCTCCCCTCCCAGACGGGCCTCCAAGCCCCAGGCAGGCCCAGGCGTGAGGAAGCTGCACCGGGGCACTGAGTCCTGAGTGCCAACGCCCTGAGTGGAACCTACCCTGGGAGCTCTTCCTGCCTCTGAGTGGCCGTGTGTGGTGGCGAGTGCAGGCGCCAGTGCCCACTGTGCTCACCACGCCCCGCTGGCCCACAGCTGGTGAAGCTGTGCAGTGGCATGGTGGAAGCCGGTAAGGCCTACGTCAG
...................................................................................................................................(((((((((((((((((((((((..((((....)))))))).))).))))))))...)).)))).))....................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786SRR189783SRR029126(GSM416755)
143B. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR029127(GSM416756)
A549. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGC...............................................................................................23115.0015.00--4.00---3.00--1.00-2.002.001.00--1.00------------------------------1.00-------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGC........................................................2118.008.00-1.00-----2.00--2.00----1.00-----1.00------1.00--------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGT.................................................................................................2116.006.00-----------------1.001.00----1.00------1.00-1.00------------------1.00---------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAG..................................................................................................2014.004.00-1.00--2.00--------------------1.00-----------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCA..............................................................................................2414.004.00-------------1.00--------------------1.00-1.00-------------1.00----------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCC.......................................................2213.003.00--------1.00-----2.00----------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCT..............................................................................................2412.0015.00----------------------1.00-------------------1.00------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGA...............................................................................................2312.002.00-1.00-------1.00---------------------------------------------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCAT....................................................2312.001.00----------------------------------------1.00--1.00-----------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTG................................................................................................2212.002.001.00-------------------------1.00----------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAG.............................................................................................2512.002.002.00------------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCACT...................................................2611.001.00---1.00---------------------------------------------------------
...CCCTCCCCTCCCAGACG......................................................................................................................................................................................................................................1711.001.00-------------------------------1.00-----------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCA.......................................................2211.008.00---------------------------------1.00---------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCAGA...................................................261.000.00--1.00----------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGGGC...............................................................................................2311.004.00---------------------------1.00---------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGAT.......................................................221.000.00---------------------------------------------1.00---------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCAAT.....................................................2411.008.00-----1.00-------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGCGCA..............................................................................................2411.004.00---1.00---------------------------------------------------------
..........................................................................................................................................................................................................GGTGAAGCTGTGCAGTGGCATGGTGGAAGCC.................3111.001.00-----------------------------------------------------1.00-------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGA........................................................211.000.00---------------------------------------------------------1.00---
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGT...............................................................................................2311.002.00-------------------------------------------------1.00-----------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAA.............................................................................................2511.004.00----------------------------------------------------1.00--------
.............................................................................................................................................................................TGCTCACCACGCCCCGAT...........................................................181.000.00-------------------------------------------------------1.00-----
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCATAA..................................................2511.001.00-----------------------------------------1.00-------------------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGC........................................................1911.001.00-1.00-----------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAGT............................................................................................2611.002.00--------1.00----------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAT.............................................................................................2511.004.00----------------------------------------------1.00--------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTGCAAC............................................................................................2611.004.00--------------------1.00----------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGCGC...............................................................................................2311.004.00---1.00---------------------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGAT................................................................................................2211.004.00-------------------1.00-----------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAT..................................................................................................201.000.00----1.00--------------------------------------------------------
...................................................AGGAAGCTGCACCGGGGC.....................................................................................................................................................................................1811.001.00--------------------------------------1.00----------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGGG................................................................................................2211.004.00-1.00-----------------------------------------------------------
........................................................................GAGTCCTGAGTGCCAACGCCCTGAG.........................................................................................................................................................2511.001.00--------------------------------------------------------1.00----
........................................................................................................................................................................................................................GTGGCATGGTGGAAGCCGGTA.............2111.001.00------------------------------------------------1.00------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCTCT...................................................261.000.00---1.00---------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCCCAC....................................................2511.001.00------------------------------------------------------1.00------
...............................................................................................................................................................................CTCACCACGCCCCGCTGGCCCA.....................................................2211.001.00-------------------------------------1.00-----------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCGAGTTTTT.............................................................................................2511.006.00-----1.00-------------------------------------------------------
.............................................................................................................................................................................TGCTCACCACGCCCCGCTGGCT.......................................................2211.008.00---------------------------------------1.00---------------------
......................................................................................................................................................................CCCACTGTGCTCACCACGCCCCGCTGGCCCACA...................................................3311.001.001.00------------------------------------------------------------
..............................................................................................................................TCTGAGTGGCCGTGTGTGGAA.......................................................................................................211.000.001.00------------------------------------------------------------
..............................................................................................................................................................................GCTCACCACGCCCCGCTGGCCCA.....................................................2311.001.00-----1.00-------------------------------------------------------
......................................................................................AACGCCCTGAGTGGAACCTACCCT............................................................................................................................................2411.001.00-----------------------------1.00-------------------------------
..............................................................................................................................................................................GCTCACCACGCCCCGCT...........................................................1720.500.50----------------------------------------------------------0.50--
.......................................................................................................................................CCGTGTGTGGTGGCGAGT.................................................................................................1820.500.50---------------0.50---------------------------------------------
....................................................................................................................................TGGCCGTGTGTGGTGGCG....................................................................................................1830.330.33-----------------------------------------------------------0.33-
.........................................................................................................ACCCTGGGAGCTCTTCCT...............................................................................................................................1830.330.33------------------------------------------------------------0.33

Antisense strand
CCACCCTCCCCTCCCAGACGGGCCTCCAAGCCCCAGGCAGGCCCAGGCGTGAGGAAGCTGCACCGGGGCACTGAGTCCTGAGTGCCAACGCCCTGAGTGGAACCTACCCTGGGAGCTCTTCCTGCCTCTGAGTGGCCGTGTGTGGTGGCGAGTGCAGGCGCCAGTGCCCACTGTGCTCACCACGCCCCGCTGGCCCACAGCTGGTGAAGCTGTGCAGTGGCATGGTGGAAGCCGGTAAGGCCTACGTCAG
...................................................................................................................................(((((((((((((((((((((((..((((....)))))))).))).))))))))...)).)))).))....................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189786SRR189783SRR029126(GSM416755)
143B. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR029127(GSM416756)
A549. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
..........................................................................................................................................................CAGGCGCCAGTGCCCACTAGT........................................................................... 211.000.001.00------------------------------------------------------------
.................................................................................................................AGCTCTTCCTGCCTCGGTG...................................................................................................................... 191.000.00------------------------1.00------------------------------------
......................................................................................................................................................................................CGCCCCGCTGGCCCAGGG.................................................. 181.000.00--------------------------------------------1.00----------------
..........................................................................................................................................................................CTGTGCTCACCACGCAGCG............................................................. 191.000.00-----------------------------------1.00-------------------------
...............................................................................................................GGAGCTCTTCCTGCCTCTT........................................................................................................................ 191.000.00---1.00---------------------------------------------------------