ID: uc001ady.2_intron_11_0_chr1_1233494_r
GENE: ACAP3(2)
chr1:1233444-1233799-


(1)
AGO1.ip
(4)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(35)
BREAST
(38)
CELL-LINE
(10)
CERVIX
(9)
HEART
(3)
HELA
(1)
LIVER
(2)
OTHER
(1)
RRP40.ip
(69)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCTGGTTCTCCATTCAGAACAGCCAGCTGGTCTACCAGAAGAAGCTCAAGGTGTGCCCTGGGCCTGGGGCTGGGGCCCTGATGGCTGGACGCCCCACCTGGGCCACAGGGCAGACTGGTCAGTTGGGGTTAGCACAGGGCCGGGGCACTAGTGGACGCCGGAGCCGGAACAGTCAGGGAGCAGAGAGCTGGACACGGGGCTTGGGGCTCAGGCAGTCGGCCTCCGGGTCTCCAAGGTGAAGCAGGAAGTGGGTGGTCGGGGCCGGGTGGTGGCTGAGGGCAGGGGCCACAGCGGTGCCGCCCACAGGATGCCCTCACCGTGGTGGTGGATGACCTCCGCCTGTGCTCTGTGAAGCC
.................................................................................................................................................................................................................................(((.(((...((...)).....(((((((((....((((.(((((..(((....)))..)))))..))))))))))))).))).)))............................................
............................................................................................................................................................................................................................221........................................................................................312..........................................
SizePerfect hitTotal NormPerfect NormSRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR189785SRR343336SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037938(GSM510476)
293Red. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
GSM532880(GSM532880)
G659T. (cervix)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191484(GSM715594)
12genomic small RNA (size selected RNA from t. (breast)
SRR040007(GSM532892)
G601T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR343335SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR191471(GSM715581)
119genomic small RNA (size selected RNA from . (breast)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACAGC................................................................................................................19839.1212.62--0.50-0.750.250.622.50----0.120.750.620.121.12-1.12-1.120.12--0.380.62--0.250.380.120.380.250.880.120.750.880.620.380.880.750.750.750.500.12-0.120.12--0.50-0.62--0.751.00----------0.380.250.750.380.620.500.250.750.380.250.500.500.25-0.620.500.380.250.380.25-0.38--0.380.380.250.380.250.25-0.25---0.250.120.250.120.250.250.250.120.25-0.12-0.12--0.250.12-------0.12----0.120.120.120.12-0.12--0.120.12---0.120.120.12--0.12-0.12----0.120.12-0.12----0.12-0.120.12--0.120.120.12-0.12--0.120.120.120.12
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACAG.................................................................................................................18834.3812.627.25-0.12-0.620.380.620.75----1.250.500.880.250.38-0.750.120.38---1.381.25-0.25-0.120.250.250.120.620.250.250.38-0.620.380.50-0.380.380.620.50----0.25----0.12-------1.00--0.120.380.250.120.500.250.380.38-0.380.25-0.120.500.25-0.120.25-0.12-0.500.120.50-0.120.120.12--0.120.38-0.250.250.25---0.12---0.12--0.12--0.120.25---0.250.25--0.12--0.12-0.120.12------0.12---0.120.12----0.120.12---0.12-0.12---0.12----------0.12---0.12--0.12----
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAA....................................................................................................................15812.6212.621.120.62--1.38-0.50-----1.250.25--0.62-0.12-0.62-------0.12-0.12-0.12-0.120.12-0.620.25--0.120.120.120.120.50----0.12-0.25--0.12----------0.120.120.25-------0.250.120.12-0.38---0.12-0.12----------------0.12-------0.25-0.250.12---0.120.25------------------------------0.12------------0.12-----------0.12-----
..................................................................................................................................................................................................................................GTCTCCAAGGTGAAGAGC................................................................................................................185.000.00-4.00-1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACA..................................................................................................................1784.3812.620.120.120.12---0.12------0.12--0.12-0.12-----0.12-----------0.120.12---0.25-0.120.250.12----0.12-----------------0.12----0.12---0.12------0.12-0.12--------0.12-------------------0.12---------0.12--0.12------0.12--0.12----0.12---------0.12-0.12----0.120.120.12--0.12---------------
................................TACCAGAAGAAGCTCAAG..................................................................................................................................................................................................................................................................................................................1814.004.00---------3.00---------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GTCTCCAAGGTGAAGAGCC...............................................................................................................193.000.00--1.002.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CGGGTCTCCAAGGTGAACAG.................................................................................................................202.000.00----1.00---------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................CACAGCGGTGCCGCCCACAGAA................................................222.000.00----------------------2.00--------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CACTAGTGGACGCCGGAGC................................................................................................................................................................................................1912.002.00-----2.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................GTGGTCGGGGCCGGGGGT.......................................................................................182.000.00----------2.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................CACAGCGGTGCCGCCCACAGT.................................................212.000.00---------------1.00---------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACATC................................................................................................................1981.8812.62--------------------------1.88----------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAAGCCTC...............................................................................................................201.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................GACTGGTCAGTTGGGGTTAGC...............................................................................................................................................................................................................................2111.001.00--------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................GTCAGGGAGCAGAGAGCT.......................................................................................................................................................................1811.001.00-------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................CGGAGCCGGAACAGTCAGGGAGCAGAG...........................................................................................................................................................................2711.001.00--------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................TCTACCAGAAGAAGCTCAAGG.................................................................................................................................................................................................................................................................................................................2111.001.001.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................CGGGTGGTGGCTGAGGGCAGGGGC......................................................................2411.001.00--------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................CACAGGGCCGGGGCACTAGTGGACGCCGG...................................................................................................................................................................................................2911.001.001.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CGGGTCTCCAAGGTGAACAGC................................................................................................................211.000.00----1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GGGGCACTAGTGGACCTG.....................................................................................................................................................................................................181.000.00---------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................CTGGGGCTGGGGCCCTGATGGCTGG............................................................................................................................................................................................................................................................................2511.001.00----------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAAGAGC................................................................................................................1921.001.00--0.500.50---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CGGGTCTCCAAGGTGAAT...................................................................................................................181.000.00------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------
..TGGTTCTCCATTCAGAACTTC.............................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................AGCACAGGGCCGGGGCTTT...............................................................................................................................................................................................................191.000.00---------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................TGGTCTACCAGAAGAAGCTCAAGG.................................................................................................................................................................................................................................................................................................................2411.001.00-----------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................CGGGGCTTGGGGCTCAGGCAGTCGGCCTCCGG..................................................................................................................................3211.001.00----------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CACTAGTGGACGCCGGAGCCG..............................................................................................................................................................................................2111.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................AAGTGGGTGGTCGGGGCCGGGTGGTGG....................................................................................2711.001.00-----------------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------
.......................................................CCCTGGGCCTGGGGCTGTA..........................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................TAGTGGACGCCGGAGCCGGAACAGTCAGGGAG................................................................................................................................................................................3211.001.00--------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................GGGTCTCCAAGGTGAACAG.................................................................................................................191.000.00-------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................CCCTGGGCCTGGGGCTGCTGT........................................................................................................................................................................................................................................................................................211.000.00-----------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................GCAGTCGGCCTCCGGGC................................................................................................................................171.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAAG...................................................................................................................1621.001.00-0.50-0.50---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................TCTCCAAGGTGAAGCAGG...............................................................................................................1811.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................CGGGGCCGGGTGGTGCCGG.................................................................................191.000.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................GAAGTGGGTGGTCGGATTT.............................................................................................191.000.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CGGGTCTCCAAGGTGAAC...................................................................................................................181.000.00----------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
..........................CTGGTCTACCAGAAGAAGCTC.....................................................................................................................................................................................................................................................................................................................2111.001.00----------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................GGGTCTCCAAGGTGAACAGC................................................................................................................201.000.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GTCTCCAAGGTGAAGCC.................................................................................................................171.000.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................GCCAGCTGGTCTACCAGAA............................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................GTGGTCGGGGCCGGGGGC.......................................................................................181.000.00----------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................CGGGTGGTGGCTGAGGGCAGG.........................................................................2111.001.00---------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TCCGGGTCTCCAAGGTGAACAGC................................................................................................................231.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................AAGGTGAAGCAGGAAAAT..........................................................................................................181.000.00---------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAAGAGTC...............................................................................................................2021.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................TGGACGCCGGAGCCG..............................................................................................................................................................................................1520.500.50------------------------------------------------------------------0.50------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAAGAGCC...............................................................................................................2020.501.00-0.50-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................CCACCTGGGCCACAGGGCAGAC.................................................................................................................................................................................................................................................2220.500.50------0.50------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................TGGTCGGGGCCGGGTGG.......................................................................................1720.500.50------------------------------------------------------------------------------------------0.50------------------------------------------------------------------------------------------
...........................................................................................................GGGCAGACTGGTCAG..........................................................................................................................................................................................................................................1540.250.25-----------------------------------0.25-------------------------------------------------------------------------------------------------------------------------------------------------
..................................CCAGAAGAAGCTCAAG..................................................................................................................................................................................................................................................................................................................1640.250.25-----------------0.25-------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................CCTCCGCCTGTGCTCTG.......1750.200.20-----------------------------0.20-------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................GCTGGACGCCCCACC..................................................................................................................................................................................................................................................................1560.170.17------------------------------------------------------------------0.17------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAATCTC................................................................................................................1980.1212.62-----------------------------------------0.12-------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACACC................................................................................................................1980.1212.62-------------------------------------------------------------------------0.12-----------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACCGC................................................................................................................1980.1212.62--------------------------------------------------------------------------------------------------------------------------0.12----------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACTGC................................................................................................................1980.1212.62----------------------------------------------------0.12--------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACAGT................................................................................................................1980.1212.62---------------------------------------------------------------------------------------------------------------------------0.12---------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACAAC................................................................................................................1980.1212.62--0.12----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAACAT.................................................................................................................1880.1212.62------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.12------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAATAGC................................................................................................................1980.1212.62------------------------------0.12------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTCTCCAAGGTGAATAG.................................................................................................................1880.1212.62--------0.12----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
GCTGGTTCTCCATTCAGAACAGCCAGCTGGTCTACCAGAAGAAGCTCAAGGTGTGCCCTGGGCCTGGGGCTGGGGCCCTGATGGCTGGACGCCCCACCTGGGCCACAGGGCAGACTGGTCAGTTGGGGTTAGCACAGGGCCGGGGCACTAGTGGACGCCGGAGCCGGAACAGTCAGGGAGCAGAGAGCTGGACACGGGGCTTGGGGCTCAGGCAGTCGGCCTCCGGGTCTCCAAGGTGAAGCAGGAAGTGGGTGGTCGGGGCCGGGTGGTGGCTGAGGGCAGGGGCCACAGCGGTGCCGCCCACAGGATGCCCTCACCGTGGTGGTGGATGACCTCCGCCTGTGCTCTGTGAAGCC
.................................................................................................................................................................................................................................(((.(((...((...)).....(((((((((....((((.(((((..(((....)))..)))))..))))))))))))).))).)))............................................
............................................................................................................................................................................................................................221........................................................................................312..........................................
SizePerfect hitTotal NormPerfect NormSRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR189785SRR343336SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037938(GSM510476)
293Red. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191440(GSM715550)
26genomic small RNA (size selected RNA from t. (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)
GSM532880(GSM532880)
G659T. (cervix)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191484(GSM715594)
12genomic small RNA (size selected RNA from t. (breast)
SRR040007(GSM532892)
G601T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR343335SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR191471(GSM715581)
119genomic small RNA (size selected RNA from . (breast)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
................................................................................................................................................................................................................................................................CGGGGCCGGGTGGTGCGGC................................................................................. 191.000.00------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------
....GTTCTCCATTCAGAACTCTG............................................................................................................................................................................................................................................................................................................................................ 201.000.00------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................CAGGGCAGACTGGTCGTAT........................................................................................................................................................................................................................................ 191.000.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................CTAACCCCAACTGACCAGTCTGCC................................................................................................................................................................................................................................ 2411.001.00---------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................AGCCACCACCCGGCCCCG.................................................................................. 1811.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------
.CTGGTTCTCCATTCAGAAGA............................................................................................................................................................................................................................................................................................................................................... 201.000.00-------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AACCCCAACTGACCAG.................................................................................................................................................................................................................................. 1611.001.00-----------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................TGACCTCCGCCTGTGGGC......... 181.000.00--------------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................GTCGGGGCCGGGTGGACG.................................................................................... 181.000.00------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................GGGTGGTGGCTGAGGCAAC.......................................................................... 191.000.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GGTCGGGGCCGGGTGGTGCC................................................................................... 201.000.00----------------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................CACCACCACGGTGAGGGCATC............................. 2120.500.50---------------------------0.50---------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................CAGTCTGCCCTGTGGCC............................................................................................................................................................................................................................................... 1730.330.33----------------------------0.33--------------------------------------------------------------------------------------------------------------------------------------------------------