ID: uc001adn.2_intron_5_0_chr1_1203373_r.3p
GENE: (1)
chr1:1203323-1203572-


(1)
AGO2.ip 		(8)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(18)
CELL-LINE 		(2)
CERVIX 		(5)
HEART 		(3)
HELA 		(6)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
XRN.ip

Sense strand
GGACAGACGGGAAGAGAGAAGCCGCAGGGCCTCTGGGTGTCTGGGCGGGTGGCAAGCGAGGGTGACCTGTGAGCTGTGACTCTGGGTGACCGGGCCCTGAATGAATGGCGGGCTGCAGAGGCGGGAGTGGGGCTGCGCCAGGGGAGAGAGCTGTGGCCGGCGCTGCTTCTCGTCGTCAGTGTAGACGTTGCTTTTAACAGATGAGCAGCACCAGCAGTAAGAGGGCTCCGACCACGGCAACCCAGAGGCT
..................................................(((..((.(((....)))))..)))......((((....))))((((............))))......(((((((((((.((((.((((.((.......)).)))))))).))))))).))))............................................................................
..................................................51............................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................AGCGAGGGTGACCTGTAA..................................................................................................................................................................................18113.001.005.00-1.00--2.00-1.00------------2.001.00--------------------1.00--------------
...........................................................................................................................................................................................................................AGAGGGCTCCGACCACGGCAAA.........2215.001.00-5.00-------------------------------------------------------
..........................................................................................................................................................................................................................AAGAGGGCTCCGACCACGGC............2015.005.00----1.00---2.00----1.00--------------------------1.00----------------
.....................................................AAGCGAGGGTGACCTGTAA..................................................................................................................................................................................1915.001.002.00-------------1.001.00-1.00---------------------------------------
.....................................................AAGCGAGGGTGACCTGTA...................................................................................................................................................................................1814.001.001.00--------------------1.00----1.00-----------1.00------------------
......................................................AGCGAGGGTGACCTGTAAA.................................................................................................................................................................................1914.001.002.00----1.00------------1.00--------------------------------------
...........................................................................................................................................................................................................................AGAGGGCTCCGACCACGGCA...........2013.003.00----1.00--------------1.00-------1.00-----------------------------
.....................................................AAGCGAGGGTGACCTGTAAA.................................................................................................................................................................................2013.001.001.00-----------------1.00--------------------1.00-----------------
.....................................................AAGCGAGGGTGACCTGTACA.................................................................................................................................................................................2012.001.001.00-1.00------------------------------------------------------
......................................................AGCGAGGGTGACCTGTAC..................................................................................................................................................................................1812.001.00-----1.00-----------1.00---------------------------------------
..........................................................................................................................................................................................................................AAGAGGGCTCCGACCACGGCAA..........2212.002.00-2.00-------------------------------------------------------
...........................................................................................................................................................................................................................AGAGGGCTCCGACCACGGCAACCCAGAGG..2911.001.00------------1.00--------------------------------------------
........................................................................................................................................................GTGGCCGGCGCTGCTTCTCGTCGAG.........................................................................251.000.00--------------1.00------------------------------------------
.............................................................................................................................................................................................................................AGGGCTCCGACCACGGCAA..........1911.001.00-----------------------------------------------1.00---------
...........................................................................................................................................................................................................................AGAGGGCTCCGACCACGGCAA..........2111.001.00-1.00-------------------------------------------------------
................................................................................................CTGAATGAATGGCGGGCTGCAGAGG.................................................................................................................................2511.001.00-----------1.00---------------------------------------------
............................................................................................................CGGGCTGCAGAGGCGGGAGGGG........................................................................................................................221.000.00------------------------------1.00--------------------------
......................................................AGCGAGGGTGACCTGTACA.................................................................................................................................................................................1911.001.00-------------------------------------------1.00-------------
.........................................................................................................................................................................................................................TAAGAGGGCTCCGACCACGGCAACC........2511.001.00-------------------------------1.00-------------------------
......................................................AGCGAGGGTGACCTGT....................................................................................................................................................................................1611.001.00--------1.00------------------------------------------------
...........................................................................................................................................................................................................................AGAGGGCTCCGACCACGGCAACC........2311.001.00-------------------1.00-------------------------------------
..................................GGGTGTCTGGGCGGGAGAG.....................................................................................................................................................................................................191.000.00----1.00----------------------------------------------------
......................................................AGCGAGGGTGACCTGTATA.................................................................................................................................................................................1911.001.00----------------------------------1.00----------------------
..............AGAGAAGCCGCAGGGCCTCTGGGCG...................................................................................................................................................................................................................251.000.00---------1.00-----------------------------------------------
...........................................................................................................................................................................................................................AGAGGGCTCCGACCACGGAATT.........221.000.00----------------------------------------------1.00----------
......................................................................................................GAATGGCGGGCTGCATGAT.................................................................................................................................191.000.00-----------------------1.00---------------------------------
............................................................................................................................................................................................................................GAGGGCTCCGACCACGGCAAC.........2111.001.00-----------------------------1.00---------------------------
.....GACGGGAAGAGAGAAGCCGCAGGG.............................................................................................................................................................................................................................2411.001.00----------------------1.00----------------------------------
....AGACGGGAAGAGAGAAGCC...................................................................................................................................................................................................................................1911.001.00-------------1.00-------------------------------------------
.....................................................AAGCGAGGGTGACCTGTAAAA................................................................................................................................................................................2111.001.001.00--------------------------------------------------------
.......................................................................................................................................................................................................................AGTAAGAGGGCTCCGACC.................1811.001.00--------------------------------------------1.00------------
...............................................................................................................................................................................TCAGTGTAGACGTTGCTTTT.......................................................2011.001.00----------------------------1.00----------------------------
...........................................................................................................GCGGGCTGCAGAGGCGGGAG...........................................................................................................................2011.001.00---------------------------------------------------1.00-----
.......................................................GCGAGGGTGACCTGTACA.................................................................................................................................................................................1821.000.50--1.00------------------------------------------------------
.....................................................AAGCGAGGGTGACCTGT....................................................................................................................................................................................1711.001.00------------1.00--------------------------------------------
....................................GTGTCTGGGCGGGTGGCAAGCGAGGGTGACC.......................................................................................................................................................................................3111.001.00-----------1.00---------------------------------------------
......................................................AGCGAGGGTGACCTGTAAAT................................................................................................................................................................................2011.001.00---------------------------------1.00-----------------------
................................................................................................CTGAATGAATGGCGGGCTGCAGAGGC................................................................................................................................2611.001.00----------1.00----------------------------------------------
...........................................................................................................................................................................................................................AGAGGGCTCCGACCACGGCAACCCAGAGGCCGA331.000.00---1.00-----------------------------------------------------
.........................................................................................................................................................................................................TGAGCAGCACCAGCAGTAAG.............................2011.001.00-------------------------------------1.00-------------------
........................................................CGAGGGTGACCTGTGGGTA...............................................................................................................................................................................191.000.00-------1.00-------------------------------------------------
........................................................................................................................................................................................................................GTAAGAGGGCTCCGACCACGGCA...........2311.001.00----------------1.00----------------------------------------
...................................................................TGTGAGCTGTGACTCTGGGTGACCGGG............................................................................................................................................................2711.001.00-----------------------------------1.00---------------------
...........................................................................................................................................................................................................................AGAGGGCTCCGACCACGGCAAC.........2211.001.00------------------------------------1.00--------------------
....AGACGGGAAGAGAGAAGCCGC.................................................................................................................................................................................................................................2111.001.00------1.00--------------------------------------------------
.......................................................................................................................................................................................................................AGTAAGAGGGCTCCGAC..................1711.001.00-------------------------------------------------1.00-------
.............................................................................................................................................................................................................................AGGGCTCCGACCACGGCAACCCAGAGGCC291.000.00---------1.00-----------------------------------------------
..........................................................................................................................................................................................................................AAGAGGGCTCCGACCACGGCA...........2111.001.00---------------1.00-----------------------------------------
.......................................................GCGAGGGTGACCTGTAAA.................................................................................................................................................................................1821.000.50--------------------------------------------------1.00------
....................................................................................................................................................AGCTGTGGCCGGCGCTGCTCTCG...............................................................................231.000.00---------1.00-----------------------------------------------
..........................................................AGGGTGACCTGTGAGCTGCGAC..........................................................................................................................................................................221.000.00---1.00-----------------------------------------------------
..................................................................................................................................................AGAGCTGTGGCCGGCGCTGCC...................................................................................211.000.00---1.00-----------------------------------------------------
....................................................................................................................................................................................................................AGCAGTAAGAGGGCTCCGACCACGGCAAC.........2911.001.00------1.00--------------------------------------------------
......................................................AGCGAGGGTGACCTGTCAAA................................................................................................................................................................................2011.001.00--1.00------------------------------------------------------
......................................................AGCGAGGGTGACCTGTTAA.................................................................................................................................................................................1911.001.001.00--------------------------------------------------------
...................................................................................................................................................GAGCTGTGGCCGGCGTA......................................................................................171.000.00------------------------------------------------1.00--------
.......................................................GCGAGGGTGACCTGTAA..................................................................................................................................................................................1721.000.50-------1.00-------------------------------------------------
.................................................................................................TGAATGAATGGCGGGCTGCAGAGGC................................................................................................................................2511.001.00----------1.00----------------------------------------------
....................................................................................................................................................................................................................AGCAGTAAGAGGGCTCCGACCA................2211.001.00------1.00--------------------------------------------------
...........AAGAGAGAAGCCGCAGGGCCTCTGGGCGT..................................................................................................................................................................................................................291.000.00---1.00-----------------------------------------------------
.......................................................................AGCTGTGACTCTGGGTGACCGG.............................................................................................................................................................2211.001.00------1.00--------------------------------------------------
...........................................................................................................................................AGGGGAGAGAGCTGTGGCCGGC.........................................................................................2211.001.00-------------------------1.00-------------------------------
......................................................................................................................................................................................................................CAGTAAGAGGGCTCCGACCACGGCA...........2511.001.00----1.00----------------------------------------------------
....................................................................................................................................................................................................................AGCAGTAAGAGGGCTCCGA...................1911.001.00--------------------------------1.00------------------------
.......................................................GCGAGGGTGACCTGTAAAA................................................................................................................................................................................1921.000.50-----------------------------------------1.00---------------
..................................................................................................................................................................................................................................TCCGACCACGGCAACTGTG.....191.000.00------------------------1.00--------------------------------
.......................................................GCGAGGGTGACCTGT....................................................................................................................................................................................1520.500.50-----------------------------------------------------0.50---
...................................................................................................................................................................................................................CAGCAGTAAGAGGGC........................1590.440.44----------0.11-----------0.11-----------------------------0.11---0.11
....................................................................................................................AGAGGCGGGAGTGGGGC.....................................................................................................................1740.250.25----------0.25----------------------------------------------
.................................................................................................................TGCAGAGGCGGGAGT..........................................................................................................................1550.200.20------------------------------------------------------0.20--
...........................................................GGGTGACCTGTGAGC................................................................................................................................................................................1560.170.17-------------------------------------------------------0.17-

Antisense strand
GGACAGACGGGAAGAGAGAAGCCGCAGGGCCTCTGGGTGTCTGGGCGGGTGGCAAGCGAGGGTGACCTGTGAGCTGTGACTCTGGGTGACCGGGCCCTGAATGAATGGCGGGCTGCAGAGGCGGGAGTGGGGCTGCGCCAGGGGAGAGAGCTGTGGCCGGCGCTGCTTCTCGTCGTCAGTGTAGACGTTGCTTTTAACAGATGAGCAGCACCAGCAGTAAGAGGGCTCCGACCACGGCAACCCAGAGGCT
..................................................(((..((.(((....)))))..)))......((((....))))((((............))))......(((((((((((.((((.((((.((.......)).)))))))).))))))).))))............................................................................
..................................................51............................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................CTGTGGCCGGCGCTGTCCG................................................................................. 191.000.00----------------1.00----------------------------------------
................................................................................................................CTGCAGAGGCGGGAGAAA........................................................................................................................ 181.000.00---------------------------------------------1.00-----------
.................................................................................................................................................................GACGACGAGAAGCAGC......................................................................... 1620.500.50----------------------------------------------------0.50----
....................................................................................................................GCCCCACTCCCGCCTCT..................................................................................................................... 1740.250.25-------0.25-------------------------------------------------