ID: uc001ack.1_intron_5_0_chr1_977083_f
GENE: (6)
chr1:977033-977385+


(3)
AGO2.ip
(5)
B-CELL
(4)
BREAST
(9)
CELL-LINE
(7)
CERVIX
(2)
HEART
(1)
HELA
(2)
LIVER
(2)
OTHER
(9)
SKIN
(1)
XRN.ip

Sense strand
CCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGGCCAGTGCCAGGGTCGAGGTGAGCGGCTCCCCCGGGGGAGGGCTCCGGCCAGTGCCAGGGTCGAGGTGGGCGGCTCCCCCGGGGGAGGGCTCCGGCCAGTGCCAGGGTCGAGGTGGGCGGCTCCCCCGGGGGAGGGCTGCGGCCAGTGCCAGGGTCGAGGTGGGCGGCTCCCCTCTGGGAGGGCCGCCTGCTCCCCTGCTCCCTGCACATCCCAGGGCAGGGATGGAGGGTGCTCCAGCCTCTCCGTGACTCCCTCACCCCTGCGTCCTAGACCAGTGCCCGGAGCCCTGCCGGTTCAATGCCGTGTGCCTGTCCCGCCGT
...........................................................................................................((((((((((((.(((((((((........)))))....))))..)))))))))))).(((...(((((........))))).((..(((((((((((...))).))))))))..)).))).((.((((...((((((......)))))).)))).))........................................................................................
...........................................................................................................108...............................................................................................................................................................270.................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040037(GSM532922)
G243T. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189782SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038861(GSM458544)
MM466. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040027(GSM532912)
G220T. (cervix)
SRR040009(GSM532894)
G727T. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................GGGGGAGGGCTCCGGCGGG..............................................................................................................................................................................................................................198.000.00--4.00-------------2.002.00---------------------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGTGCT.......................................................................................2214.004.00--------------1.00---------1.00--1.00--------1.00--------
.................................................................GGGGGAGGGCTCCGGCGGGT............................................................................................................................................................................................................................................................................204.000.00-------------2.00-----2.00-------------------------
.....................................................................................................................................................................................................................................................AGGGCAGGGATGGAGGGTGCT.......................................................................................2114.004.002.00-------------------2.00------------------------
..........................................................................................................................................................CCCCCGGGGGAGGGCGCGC....................................................................................................................................................................................193.000.00--------3.00------------------------------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGT..........................................................................................1913.003.003.00--------------------------------------------
............................................................CCCCCGGGGGAGGGCGCGG..................................................................................................................................................................................................................................................................................193.000.00-------3.00-------------------------------------
...........................................................................................................CCCCCGGGGGAGGGCCGG....................................................................................................................................................................................................................................183.000.00-----3.00---------------------------------------
...................................................................................................................................................................................................................................................CCAGGGCAGGGATGGAGGGTGCTC......................................................................................2413.003.00---------3.00-----------------------------------
....................................................................................................................................................................................................................................................................................................................................GGTTCAATGCCGTGTGCCTGTC.......2213.003.003.00--------------------------------------------
..........................................................................................................................................................CCCCCGGGGGAGGGCCGCG....................................................................................................................................................................................193.000.00-----------3.00---------------------------------
...................................................................GGGAGGGCTCCGGCCAGTGC..........................................................................................................................................................................................................................................................................2022.002.002.00--------------------------------------------
................................................................................................................GGGGGAGGGCTCCGGCGCG..............................................................................................................................................................................................................................192.000.00----------2.00----------------------------------
.................................................................................................................GGGGAGGGCTCCGGCGGGC.............................................................................................................................................................................................................................192.000.00---------------2.00-----------------------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGTG.........................................................................................2012.002.001.00---------------------1.00----------------------
.................................................................GGGGGAGGGCTCCGGCG...............................................................................................................................................................................................................................................................................172.000.00-2.00-------------------------------------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGTGCTAA.....................................................................................2411.004.00---------------------------------1.00-----------
...................................................................................................................................................................................................................................................CCAGGGCAGGGATGGAGGGCG.........................................................................................211.000.00-----------------------1.00---------------------
.................AGAAAGTGCGCTCCGGCCAGTGCCAGGGTCGAG...............................................................................................................................................................................................................................................................................................................3311.001.00------------------------------1.00--------------
.....................................................................................................................................................................................................................................................AGGGCAGGGATGGAGGGTGT........................................................................................201.000.00--------------------------------1.00------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGTGC........................................................................................2111.001.00--------------1.00------------------------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGTGCTA......................................................................................2311.004.00--------------------------1.00------------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGTGCTT......................................................................................2311.004.00-----------------------------1.00---------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGTGCTCT.....................................................................................241.000.00----------------------------1.00----------------
............................................................................................................................................................CCCGGGGGAGGGCTGCGGCA.................................................................................................................................................................................201.000.00------------------1.00--------------------------
......................................................................................................................................................................................................................................................GGGCAGGGATGGAGGCACC........................................................................................191.000.00-------------------------------------1.00-------
...........................CTCCGGCCAGTGCCAGGGTCGA................................................................................................................................................................................................................................................................................................................2231.001.00---1.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................................................GGTTCAATGCCGTGTGCCT..........1911.001.00-----------------------------------1.00---------
...................................................................................................................................................................................................................................................CCAGGGCAGGGATGGAGGGT..........................................................................................2011.001.001.00--------------------------------------------
..................................................................................................................................................................GGAGGGCTGCGGCCAGGACC...........................................................................................................................................................................201.000.00-------------------------------1.00-------------
....................................................................................................................................................................................................................................................CAGGGCAGGGATGGAGGGTGCTCA.....................................................................................241.000.00----------------------------------1.00----------
.........CCTCCTGCAGAAAGTGC.......................................................................................................................................................................................................................................................................................................................................1720.500.50---0.50-----------------------------------------
......................................................................................................................................................................................................................................................................................................................CCCGGAGCCCTGCCG............................1530.330.33-0.33-------------------------------------------
...........................................................................................................................................................................................................CCTCTGGGAGGGCCG.......................................................................................................................................1570.140.14--------------------------------------------0.14

Antisense strand
CCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGGCCAGTGCCAGGGTCGAGGTGAGCGGCTCCCCCGGGGGAGGGCTCCGGCCAGTGCCAGGGTCGAGGTGGGCGGCTCCCCCGGGGGAGGGCTCCGGCCAGTGCCAGGGTCGAGGTGGGCGGCTCCCCCGGGGGAGGGCTGCGGCCAGTGCCAGGGTCGAGGTGGGCGGCTCCCCTCTGGGAGGGCCGCCTGCTCCCCTGCTCCCTGCACATCCCAGGGCAGGGATGGAGGGTGCTCCAGCCTCTCCGTGACTCCCTCACCCCTGCGTCCTAGACCAGTGCCCGGAGCCCTGCCGGTTCAATGCCGTGTGCCTGTCCCGCCGT
...........................................................................................................((((((((((((.(((((((((........)))))....))))..)))))))))))).(((...(((((........))))).((..(((((((((((...))).))))))))..)).))).((.((((...((((((......)))))).)))).))........................................................................................
...........................................................................................................108...............................................................................................................................................................270.................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040037(GSM532922)
G243T. (cervix)
SRR040031(GSM532916)
G013T. (cervix)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189782SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038861(GSM458544)
MM466. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040027(GSM532912)
G220T. (cervix)
SRR040009(GSM532894)
G727T. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................GGCGGCTCCCCCGGGGGCA........................................................................................................................................................................................... 194.000.00-4.00-------------------------------------------
........................................................GGCTCCCCCGGGGGAGCC....................................................................................................................................................................................................................................................................................... 183.000.00------3.00--------------------------------------
..........................................................................................................................................................CCCCCGGGGGAGGGCCGGG.................................................................................................................................................................................... 193.000.00------------3.00--------------------------------
....................................................................................................................................................GCGGCTCCCCCGGGGGTCA.......................................................................................................................................................................................... 193.000.00----3.00----------------------------------------
..................................................................................................................................................GGGCGGCTCCCCCGGCCG............................................................................................................................................................................................. 182.000.00-2.00-------------------------------------------
...................................................................................................................................................GGCGGCTCCCCCGGGGG............................................................................................................................................................................................. 172.000.00-2.00-------------------------------------------
................................................................................................................................................................GGGGAGGGCTGCGGCCAGCCC............................................................................................................................................................................ 211.000.00------------------1.00--------------------------
.........................................................................................................................................................................................................................TGTGCAGGGAGCAGGGGAGCAGGC................................................................................................................ 2411.001.00---1.00-----------------------------------------
................................................................................................................................................................................................................GGGAGGGCCGCCTGCGGT............................................................................................................................... 181.000.00-------------------------1.00-------------------
......................................................................................CGCCCACCTCGACCCTGG......................................................................................................................................................................................................................................................... 1831.001.00---1.00-----------------------------------------
..........CTCCTGCAGAAAGTGACTG.................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------1.00-----------------------
...................................................................................................................................................GGCGGCTCCCCCGGGGGGC........................................................................................................................................................................................... 190.670.00-0.67-------------------------------------------
.....................................................................................................................................................................................................................................CCTGGGATGTGCAGGGAGC......................................................................................................... 1920.500.50---------------------------------------0.50-----
...................................................................................................................................................GGCGGCTCCCCCGGGGTCG........................................................................................................................................................................................... 190.330.00----------------------------------------0.33----
...................................................................................................................................................CCCGGGGGAGCCGCC............................................................................................................................................................................................... 1560.330.33-----------------------------------------0.33---
..............................................................................................................GGAGCCCTCCCCCGG.................................................................................................................................................................................................................................... 1570.290.29------------------------------------------0.29--
......................................................................................................................................................................................................................CAGGGGAGCAGGCGGC........................................................................................................................... 1650.200.20-------------------------------------------0.20-