ID: uc001ack.1_intron_0_0_chr1_955754_f.5p
GENE: (1)
chr1:955704-955953+


(2)
AGO2.ip
(2)
B-CELL
(7)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(1)
HELA
(3)
LIVER
(2)
OTHER
(23)
SKIN

Sense strand
TGGAGGAGATCCTCAACGTGGACCCGGTGCAGCACACGTACTCCTGCAAGGTGCGCCCACCCGGACCCCGGCCTCCCCTCGCGACGCCTGCCGCCCCGCCGGGACCCCCGCCCCAGGCCGTGGGAACCAGCCCCGGTCGCTCCGCAGCCCCCGCTCCGGCTCCCTTGGCGACCGCCAAGCCCCGGGAGGGGGGGTCGCCGGGTCCCGGGAAACTCGCGGGCGCCGGGGAAAGTTGCTGCGCCGCCGCCGT
.........................................................................................((.(((..((.((..(((.((((...)).)).)))..)).))...))).))...((.((((((.((((((....((((((....))))))..)))).)).)))))).))....................................................
.........................................................................................90............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR444064(SRX128912)
Sample 21cDNABarcode: AF-PP-334: ACG CTC TTC . (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
....................................................................................................................................................................................CCCGGGAGGGGGGGTC......................................................161107.00107.0068.0016.007.006.001.002.00-3.00--------1.001.001.001.00--------------------------------
.....................................................................................................................................................................................CCGGGAGGGGGGGTC......................................................15332.6732.6723.332.000.670.330.672.67-0.67--------0.670.670.330.33--------------------------0.33-----
...................................................................................................................................................................................CCCCGGGAGGGGGGGTC......................................................17112.0012.003.003.00--4.001.00--------------------1.00-------------------------
..........................GTGCAGCACACGTACTCCTGCAAG........................................................................................................................................................................................................2413.003.00----------3.00-----------------------------------------
...................................................................................................................................................................................CCCCGGGAGGGGGGG........................................................1522.002.00--------1.50--------------------------------0.50----------
....................................................................................................................................................................................CCCGGGAGGGGGGGT.......................................................1531.331.331.00-0.33-------------------------------------------------
...........CTCAACGTGGACCCGGTGCAGCA........................................................................................................................................................................................................................2311.001.00--------------1.00-------------------------------------
..............................................................................................CCCGCCGGGACCCCCGGGC.........................................................................................................................................191.000.00--------------------------------------1.00-------------
..................TGGACCCGGTGCAGCACACGGA..................................................................................................................................................................................................................221.000.00------1.00---------------------------------------------
...................GGACCCGGTGCAGCACAC.....................................................................................................................................................................................................................1811.001.00------------1.00---------------------------------------
..............................................................................................CCCGCCGGGACCCCCGGG..........................................................................................................................................181.000.00---------------1.00------------------------------------
....................GACCCGGTGCAGCACACGTAC.................................................................................................................................................................................................................2111.001.00-------------------------1.00--------------------------
..................TGGACCCGGTGCAGCACACGTA..................................................................................................................................................................................................................2211.001.00------1.00---------------------------------------------
..........................................................................................CCGCCCCGCCGGGACCGGGG............................................................................................................................................201.000.00---------1.00------------------------------------------
............................................................................................GCCCCGCCGGGACCCCCC............................................................................................................................................181.000.00-------------1.00--------------------------------------
...........................................................................................CGCCCCGCCGGGACCACCA............................................................................................................................................191.000.00-----------------------------1.00----------------------
............................................................................................................................................................................................................CCGGGAAACTCGCGGATGT...........................191.000.00-----------------------------------1.00----------------
..........................................................................................CCGCCCCGCCGGGACCTGGG............................................................................................................................................201.000.00---------1.00------------------------------------------
...............ACGTGGACCCGGTGCAGCACACG....................................................................................................................................................................................................................2311.001.00---------------------------------------1.00------------
...................................................................................................................................................................................CCCCGGGAGGGGGGGTCGGTCG.................................................221.000.00----------------------------------1.00-----------------
........ATCCTCAACGTGGACCCGGTGCAG..........................................................................................................................................................................................................................2411.001.00------1.00---------------------------------------------
.................................................................................................................................................................................................................................GGGAAAGTTGCTGCGCGGT......191.000.00-------------------------------1.00--------------------
...............................................................GACCCCGGCCTCCCCACCA........................................................................................................................................................................191.000.00------------------------------1.00---------------------
.......................................................................................................................................................................................................................................GTTGCTGCGCCGCCGC...1611.001.00------------------------------------1.00---------------
....................................................................................................................................................................................................................CTCGCGGGCGCCGGGGGTC...................191.000.00----------------------1.00-----------------------------
..............................................................................................CCCGCCGGGACCCCCGGGG.........................................................................................................................................191.000.00--------1.00-------------------------------------------
...........CTCAACGTGGACCCGGTG.............................................................................................................................................................................................................................1811.001.00---------------------1.00------------------------------
...................GGACCCGGTGCAGCACACGT...................................................................................................................................................................................................................2011.001.00------------1.00---------------------------------------
..................................................................CCCGGCCTCCCCTCGCAGCG....................................................................................................................................................................201.000.00---------------------------------1.00------------------
..................TGGACCCGGTGCAGCACA......................................................................................................................................................................................................................1811.001.00------1.00---------------------------------------------
..............AACGTGGACCCGGTGCAGC.........................................................................................................................................................................................................................1911.001.00-----------1.00----------------------------------------
........ATCCTCAACGTGGACCCGGTGCA...........................................................................................................................................................................................................................2311.001.00--------------1.00-------------------------------------
...................................................................................................................................................................................CCCCGGGAGGGGGGGCCGG....................................................1920.502.00--------0.50-------------------------------------------
.......................................................CCCACCCGGACCCCGG...................................................................................................................................................................................1620.500.50------------------------------------------0.50---------
..................................................................................................................................................................................GCCCCGGGAGGGGGG.........................................................1580.250.25--------0.25-------------------------------------------

Antisense strand
TGGAGGAGATCCTCAACGTGGACCCGGTGCAGCACACGTACTCCTGCAAGGTGCGCCCACCCGGACCCCGGCCTCCCCTCGCGACGCCTGCCGCCCCGCCGGGACCCCCGCCCCAGGCCGTGGGAACCAGCCCCGGTCGCTCCGCAGCCCCCGCTCCGGCTCCCTTGGCGACCGCCAAGCCCCGGGAGGGGGGGTCGCCGGGTCCCGGGAAACTCGCGGGCGCCGGGGAAAGTTGCTGCGCCGCCGCCGT
.........................................................................................((.(((..((.((..(((.((((...)).)).)))..)).))...))).))...((.((((((.((((((....((((((....))))))..)))).)).)))))).))....................................................
.........................................................................................90............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR444064(SRX128912)
Sample 21cDNABarcode: AF-PP-334: ACG CTC TTC . (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..................................................................CCCGGCCTCCCCTCGCGC...................................................................................................................................................................... 183.000.00---------------1.00--------1.00-------1.00-------------------
....................................................................................................................................................................................................................CTCGCGGGCGCCGGGGGG.................... 182.000.00---------------------------1.001.00-----------------------
...........................................................................................................CCGCCCCAGGCCGTGGTCGA........................................................................................................................... 201.000.00-----------1.00----------------------------------------
........................................................................................................................................TCGCTCCGCAGCCCCCGCTC.............................................................................................. 201.000.00-------------------------------------1.00--------------
..........................................................................................................................GGAACCAGCCCCGGTAAA.............................................................................................................. 181.000.00-------------1.00--------------------------------------
.....................................................................................................................................................................................CCGGGAGGGGGGGTCCG.................................................... 1731.000.00--------------------1.00-------------------------------
..................................................................CGCGAGGGGAGGCCGGG....................................................................................................................................................................... 1711.001.00-----------------------1.00----------------------------
..................................................................................................................................................................................CCCCCCCTCCCGGGGC........................................................ 1611.001.00---------1.00------------------------------------------
...................................................................CCGGCCTCCCCTCGCGT...................................................................................................................................................................... 171.000.00----------------------------------------1.00-----------
...............................................................................GCGGCAGGCGTCGCG............................................................................................................................................................ 1530.670.67-------------------------------------------0.330.33-------
.................................................................................................................................................................................CCCCCCTCCCGGGGCT......................................................... 1630.330.33---------------------------------------------0.33------
..................................................................................................................................................................................GCCCCGGGAGGGGGGG........................................................ 1680.250.00---------0.12-----------------------------------------0.12
..................................................................................................................................................................................CCCCCCTCCCGGGGC......................................................... 1580.250.25--------------------0.12----------------------------0.12--
..................................................................................................................................................................................GCCCCGGGAGGGGGGCC....................................................... 1780.250.00------------------------------------------------0.12-0.12-
....................................................................................GCGGGGCGGCAGGCG....................................................................................................................................................... 1560.170.17-----------------------------------------------0.17----
..................................................................................................................................................................................GCCCCGGGAGGGGGGGC....................................................... 1780.120.00---------0.12------------------------------------------