ID: hsa-mir-7107
GENE: KDM2B(4)
chr12:121882026-121882302-


(1)
AGO1.ip 		(1)
AGO2.ip 		(5)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(18)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAAACTGCTGGGAGTGTCCGAAGTGTAACCACGCCGGCAAGACCGGGAAAGTGAGTGCCGGGCTCCAAGTCCCAGGGTCAGTCGGGAGAGGGGCGGGCCTGGGCCTGGCCGGGACCAGCCTGTCCCAGGAGTTTCAGGCAGGTGGGTTGCCGTCGGCCTGGGGAGGAGGAAGGGCAAGTCCAAAGGTATACAGTTGGTCTGTTCATTCTCTCTTTTTGGCCTACAAGCAAAAGCGTGGCCCTGGCTTTAAGTACGCCTCCAACCTGCCCGGCTCCCT
...................................................................................((.....((.(((((....))))).))....)).((((.(((......((((((((.(((((....))))).))))))))....))).))))......................................................................................................
...................................................................................84............................................................................................178.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGGG.......................................................................................................2217.007.002.00-1.00----2.00-------1.00------------1.00--------------------------
........................................................................................AGGGGCGGGCCTGGGTAG...........................................................................................................................................................................184.000.00---------1.002.00----------------------------------------1.00---
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGG........................................................................................................2114.004.001.002.00------1.00----------------------------------------------
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGGGT......................................................................................................2314.007.003.00-------------------------------------1.00----------------
.....................................................................................................................................................................................................TCTGTTCATTCTCTCTTTTTGGC.........................................................2313.003.00------1.00----------------------1.00-------------------1.00-----
......................................................................CCCAGGGTCAGTCGGG...............................................................................................................................................................................................1613.003.00-----------1.00-1.00--------1.00--------------------------------
.............................CACGCCGGCAAGACCGGG......................................................................................................................................................................................................................................1812.002.00---2.00---------------------------------------------------
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGGT.......................................................................................................2212.004.00--2.00----------------------------------------------------
...........................................................................................................................................................................................................................................................TACGCCTCCAACCTGCCCGGCTCCCT2612.002.00----2.00--------------------------------------------------
......................................................................CCCAGGGTCAGTCGG................................................................................................................................................................................................1541.501.50-----------0.500.250.25---------------------------------------0.250.25
...................GAAGTGTAACCACGCC..................................................................................................................................................................................................................................................1611.001.00-------------------------1.00-----------------------------
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGGGCAAG...................................................................................................2611.001.00-1.00-----------------------------------------------------
................................................................................................................................................................................................................................AAGCAAAAGCGTGGCCCTGGCT...............................2211.001.00---------------------------------1.00---------------------
........................................................................................AGGGGCGGGCCTGGGTA............................................................................................................................................................................171.000.00----------------------------------1.00--------------------
.....................................................................................................................................................................................................TCTGTTCATTCTCTCTTTTTGGCC........................................................2411.001.00--------1.00----------------------------------------------
..................................................................................CGGGAGAGGGGCGGGAGCC................................................................................................................................................................................191.000.00---------------------1.00---------------------------------
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGA........................................................................................................211.000.00--------------1.00----------------------------------------
..........................................................CGGGCTCCAAGTCCCAGGGTCAGTCGGGA..............................................................................................................................................................................................2911.001.00--------------------------1.00----------------------------
......................................................GTGCCGGGCTCCAAGAGAC............................................................................................................................................................................................................191.000.00-------------------1.00-----------------------------------
.............................................................................................CGGGCCTGGGCCTGG.........................................................................................................................................................................1501.001.00------------------------------1.00------------------------
.....................................................................TCCCAGGGTCAGTCGACGT.............................................................................................................................................................................................191.000.00---------1.00---------------------------------------------
......................................................................CCCAGGGTCAGTCGGGA..............................................................................................................................................................................................1711.001.00-----------------------1.00-------------------------------
........................................................................................................................................................TCGGCCTGGGGAGGAGGA...........................................................................................................1811.001.00---------------------------1.00---------------------------
......................................................................CCCAGGGTCAGTCGGGACCT...........................................................................................................................................................................................2011.001.00------------1.00------------------------------------------
......................................................................................................................CCTGTCCCAGGAGTTCACG............................................................................................................................................191.000.00-----1.00-------------------------------------------------
......................................................................CCCAGGGTCAGTCGGGTCCT...........................................................................................................................................................................................2011.003.00--------------------------------1.00----------------------
.....................................................................................................................................................................................................TCTGTTCATTCTCTCTTTTTGGCCTACAAGA.................................................311.000.00----------------1.00--------------------------------------
........................................................................................AGGGGCGGGCCTGGGTAGG..........................................................................................................................................................................191.000.00------------------1.00------------------------------------
.................................CCGGCAAGACCGGGAAAGTGAG..............................................................................................................................................................................................................................2211.001.00------------------------------------1.00------------------
.........................................................................................................................................................CGGCCTGGGGAGGAGGAAGGG.......................................................................................................2111.001.00----------------------------------------------1.00--------
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAAGG.......................................................................................................221.000.001.00------------------------------------------------------
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGGA.......................................................................................................2211.004.00------------------------------------------1.00------------
..................................................................................................................................................................................................TGGTCTGTTCATTCTCTCTTTTTGGCC........................................................2711.001.00---------------------------------------1.00---------------
.......................................................................................................................................................................................AGGTATACAGTTGGTCGTTC..........................................................................201.000.00-----1.00-------------------------------------------------
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGGGG......................................................................................................2311.007.001.00------------------------------------------------------
........................................................................................................................TGTCCCAGGAGTTTCAG............................................................................................................................................1720.500.50----------------------------------------------------0.50--
........................................................................CAGGGTCAGTCGGGA..............................................................................................................................................................................................1530.330.33------------0.33------------------------------------------
......................................................................CCCAGGGTCAGTCGGTC..............................................................................................................................................................................................1740.251.50-----------0.25-------------------------------------------

Antisense strand
CAAACTGCTGGGAGTGTCCGAAGTGTAACCACGCCGGCAAGACCGGGAAAGTGAGTGCCGGGCTCCAAGTCCCAGGGTCAGTCGGGAGAGGGGCGGGCCTGGGCCTGGCCGGGACCAGCCTGTCCCAGGAGTTTCAGGCAGGTGGGTTGCCGTCGGCCTGGGGAGGAGGAAGGGCAAGTCCAAAGGTATACAGTTGGTCTGTTCATTCTCTCTTTTTGGCCTACAAGCAAAAGCGTGGCCCTGGCTTTAAGTACGCCTCCAACCTGCCCGGCTCCCT
...................................................................................((.....((.(((((....))))).))....)).((((.(((......((((((((.(((((....))))).))))))))....))).))))......................................................................................................
...................................................................................84............................................................................................178.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................CCGTCGGCCTGGGGATC............................................................................................................... 172.000.00------------------------------------------------1.00-1.00----
.....................................................AGTGCCGGGCTCCAATTTG............................................................................................................................................................................................................. 191.000.00-----------------1.00-------------------------------------
............AGTGTCCGAAGTGTAATCAA..................................................................................................................................................................................................................................................... 201.000.00---------------------------------------------1.00---------
...............................................................................................................................................................................................AGTTGGTCTGTTCATTGC.................................................................... 181.000.00-----------------------------------1.00-------------------
..................................................................................................................................................................................................................................CAGGGCCACGCTTTTGC.................................. 1711.001.00--------------------1.00----------------------------------
............................................................................................................................................................................................................................................................ACGCCTCCAACCTGCTCAA...... 191.000.00-----------------------------------------------1.00-------
..........................................................CGGGCTCCAAGTCCCAGGGTCAGTCTCA............................................................................................................................................................................................... 281.000.00------------------------1.00------------------------------
...................................................................................................................................................................................................CAAAAAGAGAGAATGAACAGACC........................................................... 2311.001.00----------------------------------------1.00--------------
..................................................................................................................................................................................................................................................................CCAACCTGCCCGGCTCCAG 191.000.00-------------------------------------1.00-----------------
...................................................................................................................................................................................................TAGGCCAAAAAGAGAGAATGAACAGACC...................................................... 2811.001.00-----------------------------------------1.00-------------
........................................................................................................................................................TCGGCCTGGGGAGGAGGAAGGACGC.................................................................................................... 2511.000.00-------------------------------------------1.00-----------
.....................................................AGTGCCGGGCTCCAAATTG............................................................................................................................................................................................................. 191.000.00-------------------------------1.00-----------------------
....................................................................................................................................................CCCCAGGCCGACGGC.................................................................................................................. 1511.001.00------1.00------------------------------------------------
..............................................................................................................................................................................................................................................................CGGGCAGGTTGGAGGC....... 1611.001.00--------------------------------------------1.00----------