ID: hsa-mir-6886
GENE: LDLR(9)
chr19:11224076-11224260+


(1)
AGO1.ip 		(5)
AGO2.ip 		(1)
AGO3.ip 		(11)
B-CELL 		(5)
BRAIN 		(21)
BREAST 		(52)
CELL-LINE 		(3)
CERVIX 		(2)
FIBROBLAST 		(4)
HEART 		(7)
HELA 		(4)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(29)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GCCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAGGTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTGCCTCAGCACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCA
..................................................................................(((((.((((.((((((((........)).)))))).))))..))))).......................................................
..........................................................................75..........................................................135................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038863(GSM458546)
MM603. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR343334SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
...............................................................................CCCGCAGGTGAGATGAGGGCT.....................................................................................21185.0085.003.006.006.0012.004.00-4.002.006.00-2.00-2.00-1.001.001.002.00-2.004.00----1.00-2.001.001.00---3.00----1.00-1.00---1.00-1.001.00---2.00---1.00-------1.001.00-----1.00---------------1.00----------1.00---------1.00---1.00----1.00-----1.00----1.00-------1.00--------------
...............................................................................CCCGCAGGTGAGATGAGG........................................................................................18134.0034.0022.00--------3.001.00--5.00------------------------1.00---1.00--------------------------1.00--------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTT...................................................................................23126.0085.00-6.00--2.00-1.001.00---2.00--1.00---------1.002.00--------1.002.00---1.00---------1.00--1.001.00-----------1.00----------------------------------------1.00----------------1.00--------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTT....................................................................................22120.0085.002.007.00--1.00-2.00-1.001.00----1.001.00--------------------1.00---1.00---------1.00---------------------------------------------------------------------1.00-----------------------------
...............................................................................CCCGCAGGTGAGATGAGGG.......................................................................................19119.0019.00---5.00-2.001.001.00-1.001.00-------4.00----------1.00---------------------------1.00------------------------------------------1.00-1.00-----------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGC......................................................................................20119.0019.006.00----1.001.001.00-1.001.00-------------------2.00-------------------1.00-------------------------------------------1.00----1.00-------------1.00-----------1.00------1.00-----------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCT.....................................................21113.0013.00--2.00-------1.00-1.00------1.00------------------------------------1.00-1.00---1.00----1.00---1.00------1.00------------------------------1.00----------------------------1.00-----------
...............................................................................CCCGCAGGTGAGATGAGGGCTAT...................................................................................23113.0085.002.001.00--------------1.00-----1.00-----1.00-------1.00----------------1.00------------1.00-------------------------------------------1.00-----------------1.001.00----1.00---------------
...............................................................................CCCGCAGGTGAGATGAG.........................................................................................17112.0012.006.00----3.00--------1.00----------------------------------------------------------------1.00-----1.00----------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCC...................................................................................23110.0010.00-3.00----------------------1.00---1.00--------------------1.00--------------------------------------1.00-------------------------1.001.00--1.00-------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCA...................................................2319.009.00--5.00------------------------------------------2.00-----------------------------------1.00--------------------------------------------1.00-----------------------
................................................................................CCGCAGGTGAGATGAGGGCTCC...................................................................................2219.009.00-2.001.00-3.00-----------1.00--------------1.00--------------------------------------------------------------------------------1.00-------------------------------------
..............................................................................GCCCGCAGGTGAGATGAGG........................................................................................1918.008.00-----8.00------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTT..................................................................................2418.0085.00-------1.00---1.00------------1.00---------1.00----1.00--------2.00-------------------1.00---------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTA...................................................................................2318.0085.002.001.00--1.00-----------1.00-------1.00----1.00--------------------------------------------------------------------------1.00---------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGA.......................................................................................1916.0034.001.00--------1.001.00-1.00--------------------------------------------1.00---------------1.00----------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCC...................................................................................2115.005.00-1.00--------------1.00--------------1.00-----------------------------------------------------------------------------------------------------1.00--1.00-------------
...............................................................................CCCGCAGGTGAGATGAGGGCTC....................................................................................2215.005.00-2.00------1.00--------------------------------1.00-1.00----------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTA....................................................................................2214.0085.002.00-----1.00-----------------------------------------------1.00-----------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTC....................................................................................2114.004.00--------1.00--1.00-------------------1.00-------------------------------------------------------------------------------------1.00--------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTA..................................................................................2413.0085.00-1.00---------1.00---------1.00--------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCT...................................................................................2313.005.00-1.00--------------------------------------------------------------------------------1.00------------------1.00------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATT..................................................................................2413.0085.00----2.00--1.00----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTTT.................................................................................2513.0085.00----1.00--1.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCT...................................................2313.003.00--3.00---------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTC....................................................2213.003.00--1.00----------------------------------------------------------1.00-----------------------------------------1.00----------------------------------------------
.......ATAGAATCTACTGGTCTGACCTG...........................................................................................................................................................2313.003.00----3.00-------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCG..............................................................................5713.003.00--------------------------3.00---------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCC......................................................2022.002.00----------------------------------0.50------------------------------------------------------------------------------------------------------------0.500.500.50----
.................................................................................CGCAGGTGAGATGAGGGCTC....................................................................................2012.002.00--2.00---------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAA...................................................................................2312.0085.00--------------1.00-------------------------------1.00-------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTTT...................................................2312.0013.00----------------------------------------------------------------------------1.00-------1.00-----------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCA.....................................................................................2112.0019.00------1.00---------------------------------------------------------------------------------------------------------------------1.00-------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTAT...................................................2312.0013.00-----------------------2.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCCTA.................................................................................252.000.00----------------------2.00-------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCT...................................................................................2212.004.00-1.00-------------------1.00--------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGA........................................................................................1812.0012.002.00-----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCAA....................................................................................2212.0019.002.00-----------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTTAAA.................................................................................232.000.00--------------------------------2.00---------------------------------------------------------------------------------------------------------------------
.......ATAGAATCTACTGGTCTGACCTGTCC........................................................................................................................................................2612.002.00-------2.00----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTAT..................................................................................2412.0085.00-1.00-----1.00----------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCCATT................................................................................2412.005.00-----------------------2.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCATTT..................................................................................2411.0019.00----------------------------------------------------1.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................................................TATGACACCGTCATCCGCG191.000.00------------------------------------------------------------------------------------------1.00-----------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATTT.................................................................................2511.0085.00---------------------------------------------------------------------------------------------1.00--------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCAA..................................................2411.009.00--------------------------------1.00---------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTT....................................................2211.0013.00--------------------------------------------------------1.00---------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATG...........................................................................................1511.001.00----------------------------------------------------------------------------------------------------------------------------------1.00-------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCAA..................................................................................2411.005.00-------------------------------------------1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................CCTTCTCTCCTCCTGCCTCAGT.................................................221.000.00-----------------------------------------------------------------------------------------------------------------------------------------1.00------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAG..................................................................................2411.0085.00-----------------------------------------------------------1.00------------------------------------------------------------------------------------------
............................................................................TGGCCCGCAGGTGAGATGAGGAA......................................................................................231.000.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTAT.................................................................................2511.0085.00---------------------------------------------------------------------------------------------------------1.00--------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTCCACA................................................................................2411.005.00-------------------------------------1.00----------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATA..................................................................................2411.0085.00------------------------------------------------------------------------------------------------------------1.00-----------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCCA....................................................................................2211.0019.00------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................CAGGTGAGATGAGGGCTAAGT.................................................................................211.000.00------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGAT.....................................................................................2111.0019.00---------------------------1.00--------------------------------------------------------------------------------------------------------------------------
......AATAGAATCTACTGGTCTGACCT............................................................................................................................................................2311.001.00------------------------------------------------------------------------------------------------1.00-----------------------------------------------------
.........AGAATCTACTGGTCTGA...............................................................................................................................................................1711.001.00--------------------------------------------------------------------------1.00---------------------------------------------------------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTG........................................................7911.001.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCCATT................................................................................2611.0010.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGA......................................................................................2011.0019.00------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCTTT.................................................................................2511.005.00-----------1.00------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................GGCCCGCAGGTGAGATGAGGGCTC....................................................................................2411.001.00-----------------------------------------------1.00------------------------------------------------------------------------------------------------------
..........................CCTGTCCCAGAGAATGATCTGCAG.......................................................................................................................................2411.001.00------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................AGCTTGACAGAGCCCACGGCGTCTCTTCCC...............301.000.00--------------------------------------------------------------------------------------------------1.00---------------------------------------------------
..................................................................................................CTCCTGGCGCTGATGC.......................................................................1611.001.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTATG..................................................................................2411.0085.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTAGA..................................................2411.0013.00------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGAA......................................................................................2011.0034.00----------------------------------------------------------1.00-------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCAT..................................................2411.009.00--------------------------------------------1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGC.......................................................1921.001.000.50--------------------------------------------------------------------------------------------------------------------------------------------0.50--------
...............................................................................CCCGCAGGTGAGATGAGGGCTGA...................................................................................2311.0085.00-------------------------------------------------------------------------------------------------------------------------------------------1.00----------
...............................................................................CCCGCAGGTGAGATGAGGGCTTAA..................................................................................2411.0085.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------
.....................TCTGACCTGTCCCAGAGAATGATCTGC.........................................................................................................................................2711.001.00-----------------------------------------------------------------------------------1.00------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGT.......................................................................................1911.0034.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------
...........AATCTACTGGTCTGACC.............................................................................................................................................................1711.001.00------------------------------------------------------------1.00-----------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTGT...................................................................................2311.0085.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAAAAA......................................................................................2011.001.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCATA.................................................2511.009.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTTAA..................................................................................2311.001.00------------------------------------------------------------------------1.00-----------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCCG....................................................................................2111.001.00------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCTCTAA.................................................2511.003.00------------------------------------------1.00-----------------------------------------------------------------------------------------------------------
..........GAATCTACTGGTCTGGGCT............................................................................................................................................................191.000.00-------------------1.00----------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAGT..................................................................................2411.0085.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCAT..................................................................................2311.004.00-------------------------------------------------------1.00----------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAA..................................................................................2411.0085.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCTCCAA.................................................................................2411.009.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGCTTTTT.................................................................................231.000.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTTAA.................................................................................2511.0085.00-----------------------------------------------------------------------------------------------------------------------------------1.00------------------
................................................................................CCGCAGGTGAGATGAGGGCTTATT.................................................................................2411.001.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGCT.....................................................................................2011.001.00-----------------------------------------------------------------------------------------------------------------------1.00------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCATT...................................................................................2311.0019.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTTCT..................................................................................2411.0085.00------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAAT..................................................................................2411.0085.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGA..........................................................................................1611.001.00-----------------------------------------------------------------------------------------------1.00------------------------------------------------------
.......................TGACCTGTCCCAGAGAATGATCTGCA........................................................................................................................................2611.001.00----------------------1.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGCAGGTGAGATGAGGGC......................................................................................1811.001.00-----------------------------------------------------------------------------1.00------------------------------------------------------------------------
..................................................GTGAGCGTCGCCCCTGCCTGCAG................................................................................................................2311.001.00-------------------------------------------------------------------------------------------------------------------------1.00----------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTCTT..................................................................................2411.005.00--------------------------------------------------------------------------------1.00---------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGAC......................................................................................2011.0034.00-----------------------------------------------------------------------------------------1.00------------------------------------------------------------
...............................................CAGGTGAGCGTCGCCGGT........................................................................................................................181.000.00--------------------------------------------------------------------------------------------1.00---------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGGCTAGA..................................................................................2411.0085.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCGCAGGTGAGATGAGGGC......................................................................................1911.001.00---------------------------------------------------------------------------1.00--------------------------------------------------------------------------
...............................................................................CCCGCAGGTGAGATGAGGCCT.....................................................................................2111.0034.00---------------------1.00--------------------------------------------------------------------------------------------------------------------------------
.........AGAATCTACTGGTCT.................................................................................................................................................................1570.570.57------------------------------------------------------------0.43----------------------------------------------------------------------------------------0.14
...............................................................................................................TGCCCTTCTCTCCTCCTGCCAAA...................................................2320.502.00-----------------------------------------------------------0.50------------------------------------------------------------------------------------------
...............................................................................................................TGCCCTTCTCTCCTCCTGCCGA....................................................2220.502.00----------------------------------------------------------------------------------------------------------------------------------------------0.50-------
................................................................................................................GCCCTTCTCTCCTCCTGC.......................................................1840.250.25--------------------------------------------------------------------------------------------------------------------------------------------------0.25---

Antisense strand
GCCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAGGTGAGCGTCGCCCCTGCCTGCAGCCTTGGCCCGCAGGTGAGATGAGGGCTCCTGGCGCTGATGCCCTTCTCTCCTCCTGCCTCAGCACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCA
..................................................................................(((((.((((.((((((((........)).)))))).))))..))))).......................................................
..........................................................................75..........................................................135................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038863(GSM458546)
MM603. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR343334SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.....................................................................GCAGCCTTGGCCCGCAG................................................................................................... 172.000.00-----------------2.00------------------------------------------------------------------------------------------------------------------------------------
.............................GTCCCAGAGAATGATGAGA......................................................................................................................................... 191.000.00-----------------------------------------1.00------------------------------------------------------------------------------------------------------------
....................................................................TGCGGGCCAAGGCTGCA.................................................................................................... 1711.001.00-------------------------------------1.00----------------------------------------------------------------------------------------------------------------
............................................................................................................................................................CGGCGTCTCTTCCTAACC........... 181.000.00---------------------1.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................CGGTGTCATAGGAAGAGACGC...... 2111.001.00---------------------------------------------------------------------------------------1.00--------------------------------------------------------------
.............................................................................................................GATGCCCTTCTCTCCTGA.......................................................... 181.000.00-------------------------------------------------------------------------------------------1.00----------------------------------------------------------
.........................................................................................................................GTGCTGAGGCAGGAGGA............................................... 1701.001.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................CCAGCTTGACAGAGCCGG............................. 181.000.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................GTCATAGGAAGAGACG.......... 1630.670.67--------------------------------------------------------------------------------------------------------------------------------------------0.67---------
...............................................................................................................................................................TCATAGGAAGAGACG........... 1550.400.40---------------------------------------------------------------------------------------------------------------------------------------------------0.200.20-