ID: hsa-mir-6872
GENE: SEMA3B(6)
chr3:50310529-50310778+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
BRAIN 		(6)
BREAST 		(20)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(6)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGCTTCTTGCCTCGCAGGCCCTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGAC
.................................................................................................................................................((((..(((((((((.((.(((......)))..)).)))))))))..))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040030(GSM532915)
G013N. (cervix)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................TCTCGCATCAGGAGGCAAGG.......................................................................................20117.0017.007.003.001.001.00-------------------2.00---------------------------1.001.00---1.00---
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCC.....................................................................................22110.0010.001.006.00-----1.00------------------------------1.00----1.00----------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGA......................................................................................2117.0017.00----7.00-------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGC......................................................................................2117.007.002.00------1.00-1.00-----1.00------------------1.00------1.00------------------
...............................................................................................................................................................................................................GTTTGTCAAGGTATTTTGGAT......................2116.006.00---6.00--------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCA....................................................................................2315.005.001.00-------3.00-1.00-------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCT....................................................................................2315.0010.00--3.00------------------------1.00----------------1.00---------------
......................................................................................................................................................................................................................................CGGAGAGCGAGAACCCAGA.1915.005.00-----5.00------------------------------------------------------
..................................................................................................................................................................................................................TGTCAAGGTATTTTGGATCCCGGA................2414.004.00--4.00---------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCAA....................................................................................2313.007.00----------------------1.00--1.00----------1.00-----------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCAT....................................................................................2313.007.00-1.00-----1.00-----------------------------1.00----------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAG........................................................................................1913.003.00------1.00--1.00-------1.00------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTT...................................................................................2413.0010.00--2.00---------------------------1.00-----------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCAT...................................................................................2412.005.00------------------1.00-----1.00-----------------------------------
...........................................................................................................................................................................................................................ATTTTGGATCCCGGAGAGCGAGAACCCA...2812.002.00------1.00-------------------------------------------1.00---------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGA.................................................2112.002.00------1.00----------------------1.00------------------------------
............................................................................................................................................................................................................................TTTTGGATCCCGGAGAG.............1712.002.00------------2.00-----------------------------------------------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGCA.....................................................................................2312.001.00-2.00----------------------------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGT.................................................212.000.00--------------1.00----------1.00----------------------------------
....................................................................................................................................................................................................................................CCCGGAGAGCGAGAACCC....1812.002.00-----------2.00------------------------------------------------
.................................................................................................................................................................................CCCATGCCTCCTGCCGCGGTC....................................................2112.002.00--1.00-----------------------------1.00---------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGC......................................................................................2012.002.002.00-----------------------------------------------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGGTCAGT.................................................222.000.00-----------------1.00------1.00-----------------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCCT....................................................................................221.000.001.00-----------------------------------------------------------
.......................................................................GAGGTTGGGTGGTCAGA..................................................................................................................................................................1711.001.00----------------1.00-------------------------------------------
......................................................................................................................................................................................................................AAGGTATTTTGGATCCCGGAGAGCG...........2511.001.00---------------------1.00--------------------------------------
..................................................................................................................................................................................................................TGTCAAGGTATTTTGGATCCCGGAGAG.............2711.001.00-----------------------------------------------------1.00------
.......................................................................................................................................................................................CCTCCTGCCGCGGTCGCCA................................................191.000.00-------------------1.00----------------------------------------
...............................................................................................................................................................................................................GTTTGTCAAGGTATTTTGGATCCCGGAG...............2811.001.00----------------1.00-------------------------------------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCCAT...................................................................................231.000.001.00-----------------------------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAAAT................................................221.000.00---------------------------------1.00--------------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGG......................................................1711.001.00---------------1.00--------------------------------------------
....................................................................................................................................................................................ATGCCTCCTGCCGCGGTCAGTT................................................221.000.00---------------------1.00--------------------------------------
..............................................................................................................................................................................................................................TTGGATCCCGGAGAGCG...........1711.001.00------------------------------------------------------1.00-----
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGAA.....................................................................................2211.0017.00-----------------------------------1.00------------------------
...................................................................................................................................................................................CATGCCTCCTGCCGCGGTCAGA.................................................2211.001.00----------------------------------------------1.00-------------
.....................................................................................................................................................................................................................CAAGGTATTTTGGATCC....................1711.001.00---------1.00--------------------------------------------------
......................................................................................................................................................................................................................AAGGTATTTTGGATCCCGGAGA..............2211.001.00---1.00--------------------------------------------------------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGCAA....................................................................................2411.001.00-1.00----------------------------------------------------------
.........................................................................................................................................................................................................................GTATTTTGGATCCCGGAGAGCG...........2211.001.00-------------------------------------------------1.00----------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCAGGACC...............................................................................2811.001.00----------------------1.00-------------------------------------
.....................................................................TAGAGGTTGGGTGGTCAGACACTG.............................................................................................................................................................2411.001.00---1.00--------------------------------------------------------
....................................................................................................................................................................................................................................CCCGGAGAGCGAGAACCCAGA.2111.001.00---1.00--------------------------------------------------------
..............................................................................................................................................GTCTCGCATCAGGAGGCAAGGC......................................................................................2211.001.00-------------1.00----------------------------------------------
...............................................................................................................................................................................................................................TGGATCCCGGAGAGCGAGAACC.....2211.001.00----------1.00-------------------------------------------------
..................................................................................................................................................................................CCATGCCTCCTGCCGCGGTCAGA.................................................2311.001.00--------------------1.00---------------------------------------
..........................................................................................................................................................................................................................TATTTTGGATCCCGGAGAGCGAGAAC......2611.001.00---1.00--------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTA...................................................................................2411.0010.00----------------------------------------1.00-------------------
.....................................................................................................................................AGCGCGTGGGTCTCGCATCAGGAGGCA..........................................................................................2711.001.00-------------------------------1.00----------------------------
..........................................................................................................................................................................................................................TATTTTGGATCCCGGAGAGC............2011.001.00----------------------------1.00-------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGAAA....................................................................................2311.0017.00-1.00----------------------------------------------------------
.................................................................................................................................................TCGCATCAGGAGGCAAGG.......................................................................................1811.001.001.00-----------------------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCA.....................................................................................2211.007.00-------1.00----------------------------------------------------
..................................................................................GTCAGACACTGTGATCCCGG....................................................................................................................................................2011.001.00-------------1.00----------------------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGCCTATT.................................................................................2611.0010.00------------------------------------------------1.00-----------
........................................................CTGGACATGGTGCTAGAGGT..............................................................................................................................................................................2011.001.00--------------1.00---------------------------------------------
..................................................................................................................................................................................................................................ATCCCGGAGAGCGAGCCGG.....191.000.00--------------------------1.00---------------------------------
...............................................................................................................................................TCTCGCATCAGGAGGCAAGGTAG....................................................................................2311.0017.00------1.00-----------------------------------------------------
......................................................................................................................................................................................GCCTCCTGCCGCGGTCGCCA................................................201.000.00---------------------------------------1.00--------------------
.............................................................................................................................................................................................................................TTTGGATCCCGGAGAGCGAGAACC.....2411.001.00------------------1.00-----------------------------------------
...............................................GAGCGCCAACTGGACATGG........................................................................................................................................................................................1911.001.00---------------------------------------------1.00--------------
................................................................................................................................................CTCGCATCAGGAGGCAAGGCAT....................................................................................2211.002.00-----------------------------------------------1.00------------
.......................................................ACTGGACATGGTGCTAGAAGTC.............................................................................................................................................................................221.000.001.00-----------------------------------------------------------
...................................................................................................................ACTACGGGAAGGGGA........................................................................................................................1520.500.50---------------------------------------------------------0.50--
......................................................................................................................................................................................................................................CGGAGAGCGAGAACC.....1520.500.50----------0.50-------------------------------------------------
.............................................................................................................................................................................................GCCGCGGTCAGAGCC..............................................1530.330.33----------------------------------------------------------0.33-
...................................................................................................CGGGTGCTGTGCCCG........................................................................................................................................1530.330.33-----------------------------------------------------------0.33

Antisense strand
CTGCTTCTTGCCTCGCAGGCCCTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGAC
.................................................................................................................................................((((..(((((((((.((.(((......)))..)).)))))))))..))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040030(GSM532915)
G013N. (cervix)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................CCCGCTGACCCATGCCTCA.............................................................. 191.000.00-------------------------------------------------------1.00----
.............CGCAGGCCCTGATCCTGA........................................................................................................................................................................................................................... 181.000.00-------------------1.00----------------------------------------
..........................................................................................AGCACCCGGGATCACAG............................................................................................................................................... 1711.001.00------------------------------------------1.00-----------------