ID: hsa-mir-6860
GENE: SYT12(6)
chr11:66813015-66813264+


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(5)
BRAIN 		(21)
BREAST 		(19)
CELL-LINE 		(1)
HEART 		(7)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
OTHER.ip 		(2)
RRP40.ip 		(12)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCCTCACCTGACGTGCTGTGTGAGCCTCAGTTTTCTCATCTGTGAAATGGGAAAAATAATAAAGGACCAATGGCAGGGCTGCAGGAGGTCACAGCAACAGTTAAGCATTGGGGAGTTTGGAGTCGGTGGGTGGAGCCAAACTGGGCAGGGCTGTGGTGAGTGAGTGTGACACTGGCCCTCACCTGTCCGCCTGCCCACAGACCCCTTCGTCAAGGTGTACCTGCTGCAGGATGGGAGGAAGATGAGCAAA
.............................................................................................................................................((((((((.....(((((((.((((...)))).))..)))))......)))))))).....................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGT.........................................................................................221238.00238.0050.0024.0028.0026.0036.0016.009.0021.001.001.005.004.005.003.001.00----1.00------------1.00-1.00---------------1.00----1.00------1.00----1.00------1.00---
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAG..........................................................................................211100.00100.0013.0021.0021.008.004.005.008.002.001.007.002.003.00--1.00------------------1.00-------------1.001.00----------------1.00------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGT.........................................................................................23187.0087.0015.001.0026.0021.003.004.002.002.00---5.00-1.00-------------------------1.00--1.00------------------1.00-------1.001.00--1.00--1.00-
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGA...........................................................................................20166.0066.008.0011.0013.004.001.005.0010.002.004.001.00-1.00-1.004.00-------------------1.00-------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGT.........................................................................................21142.0042.001.0010.005.003.002.006.004.001.001.00-3.001.001.001.001.00-------1.00-----------------1.00-------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGA...........................................................................................21137.0037.007.002.00-8.002.001.007.00-2.002.001.002.001.001.00--------------1.00-------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGA.........................................................................................22127.00100.0011.002.00-1.003.002.001.00-2.001.00--1.00-1.00----------1.00----1.00-----------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGT.......................................................................................23124.005.007.002.00-1.003.001.00-5.001.001.00---------1.00-------------------------------1.00-------1.00------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAG..........................................................................................22124.0024.007.004.001.005.002.003.001.00----1.00------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTGT.......................................................................................24119.006.0010.001.00-2.00-2.00------1.001.00-------1.00--------1.00-----------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAG..........................................................................................20118.0018.001.002.00-3.00-4.00--3.002.001.001.00--------------------------------1.00---------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGT.........................................................................................20118.0018.001.006.00-3.00-5.00---1.00-1.00---------------------------------1.00--------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGTGA.......................................................................................22111.0011.00---1.00-1.00-4.00-1.002.001.00---------------------------------------------------1.00--------------
................................................................................................................................................................TGAGTGTGACACTGGTGTT.......................................................................1911.000.00---------------5.00-2.003.00----1.00------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGA.......................................................................................23111.0011.001.001.006.00-------1.00--1.00-----------------------------1.00----------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTG............................................................................................19110.0010.001.002.001.00--2.00--3.00-1.00-------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAA..........................................................................................21110.0066.00---4.00-1.001.00-1.00-1.00-2.00-----------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGA.........................................................................................21110.0018.001.003.00--2.00-1.00--1.001.00--1.00----------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGG.........................................................................................2218.00100.00-1.00-2.002.002.00---------------------------------------------------1.00--------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGA.........................................................................................2317.0024.00--1.00----2.002.00-1.00-----------------------------------------------------1.00-------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGA...........................................................................................1917.007.00-2.00-1.00-2.001.00---1.00-------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTG............................................................................................2017.007.001.00-2.00---1.00-1.002.00--------------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGTGT.......................................................................................2217.002.003.002.00--1.001.00------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTT........................................................................................2317.00238.001.00-4.00----1.00----------------------------------------------------------------1.00-----
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAA..........................................................................................2216.0037.004.001.00-------------------------------------------------------------------------1.00--
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTG........................................................................................2316.006.002.001.00-1.001.00--------------------------------------------1.00----------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTGAGT.....................................................................................2616.006.00----5.00-1.00-----------------------------------------------------------------------
.........................................................................................................................................AAACTGGGCAGGGCTGTGGTGAG..........................................................................................2315.005.005.00-----------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAAA.........................................................................................2215.0066.002.001.00----1.00----------------------------------1.00------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTGA.......................................................................................2415.005.00-2.00--1.001.00----------------1.00-------------------------------------------------------
................................................................................................................................................................TGAGTGTGACACTGGTGT........................................................................185.000.00---------------2.00-2.00-----1.00------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTGTAT.....................................................................................2615.006.005.00-----------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTG........................................................................................2215.005.001.001.00----1.00----1.00----------------------------------1.00-------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGT.............................................................................................1815.005.00-----1.00---4.00--------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGT...........................................................................................2115.007.00-1.00----2.00----1.00-------1.00----------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTTAGT.........................................................................................2214.005.004.00-----------------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGT.............................................................................................1914.004.00------1.00-1.001.00--------------1.00-----------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTAAT......................................................................................2514.00238.00----3.00-------1.00-----------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTCAGT.........................................................................................2214.005.001.00--2.00--1.00-----------------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGA...........................................................................................1814.004.00-1.00--------1.00-----------------------------------------1.00---------------1.00---------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTAT.......................................................................................2413.00238.002.00---1.00-------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGGGT.........................................................................................2213.0010.00--2.001.00--------------------------------------------------------------------------
.................................................................................................................................................CAGGGCTGTGGTGAGTGAGTG....................................................................................2113.003.00-------3.00----------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGGG..........................................................................................2113.0010.00-1.00-1.001.00-------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTTTT......................................................................................2513.00238.00--3.00---------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAT..........................................................................................2113.0066.00---3.00--------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAAAT........................................................................................2313.0066.00--------3.00---------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGGGA...........................................................................................2113.001.001.00--1.00------1.00-------------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGTGAA......................................................................................2313.0011.003.00-----------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGAA........................................................................................2212.0018.00-1.00------1.00---------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAT..........................................................................................2212.0037.00----------1.001.00------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGT...........................................................................................2012.0010.00-----1.001.00-----------------------------------------------------------------------
..................................................................................................................................................................................................................................CAGGATGGGAGGAAGATGA.....1912.002.002.00-----------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTG............................................................................................1822.002.00-0.50------0.501.00--------------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGTG........................................................................................2112.002.00-1.00---1.00------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTA........................................................................................2312.00238.001.00-------1.00---------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGTA......................................................................................2412.005.001.00-------1.00---------------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAG..........................................................................................1912.002.001.001.00----------------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGTTAT......................................................................................2612.0087.002.00-----------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAAA.........................................................................................2112.007.00-----1.00---1.00--------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAAAA........................................................................................2412.0037.00------2.00-----------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTAA.......................................................................................2412.00238.00-1.00----1.00-----------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTA............................................................................................2012.004.00------------2.00-----------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGTA..........................................................................................2212.007.00--------------------2.00---------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGTCT.....................................................................................2512.005.00----2.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................CCTGCTGCAGGATGGGAGGAAGATGA.....2612.002.00---------------------------2.00--------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGAA........................................................................................2312.00100.00------1.00-1.00---------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGGGA...........................................................................................2031.670.33-0.330.670.33-0.33------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGATT.........................................................................................2211.0066.001.00-----------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTCAGA.........................................................................................2211.005.00------1.00-----------------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGAA........................................................................................2111.002.00----------1.00-------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGAAA.......................................................................................2511.0024.00----1.00-------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGAGTTA...................................................................................2711.001.001.00-----------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGAGG.....................................................................................2511.001.00------------1.00-----------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGATT.........................................................................................2311.0037.00------------------------------------------------------------1.00-----------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTA............................................................................................1911.005.00-----1.00------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGTTT.......................................................................................2411.00238.001.00-----------------------------------------------------------------------------
..................................................................................................................................................................................TCACCTGTCCGCCTGCCCACAGA.................................................2311.001.00---1.00--------------------------------------------------------------------------
.................................................................................................................................................................................CTCACCTGTCCGCCTGCCCACAG..................................................2311.001.00-1.00----------------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGTAAA......................................................................................2611.0087.00---1.00--------------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAAA.........................................................................................2311.0037.00--------1.00---------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGGGA.......................................................................................2311.0018.00-----1.00------------------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGTGAAT.....................................................................................2411.0011.00----------1.00-------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGATAT........................................................................................2311.0066.001.00-----------------------------------------------------------------------------
.................................................................ACCAATGGCAGGGCTGCAG......................................................................................................................................................................1911.001.00--------------------------1.00---------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGAAAT......................................................................................2311.002.00------------1.00-----------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGAAA.....................................................................................2511.0011.001.00-----------------------------------------------------------------------------
..................................................................................................................................................................................................................................CAGGATGGGAGGAAGATGAGCA..2211.001.001.00-----------------------------------------------------------------------------
................................................................................................................................................................................................................................TGCAGGATGGGAGGAACG........181.000.00------------------------------------------------------------------1.00-----------
...................................................................................................................................................................................................................AAGGTGTACCTGCTGCAGGATGGGAGG............2711.001.00----------------------------1.00-------------------------------------------------
..................................................................................................................................................................................TCACCTGTCCGCCTGCCC......................................................1811.001.00-1.00----------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGAG......................................................................................2411.001.00--------------1.00---------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGTAT.....................................................................................2511.005.00-----1.00------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTTA...........................................................................................2011.005.00---1.00--------------------------------------------------------------------------
.................................................................................................................................................................................................................................GCAGGATGGGAGGAAGATGAGC...2211.001.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................................GGATGGGAGGAAGATGAGTA..201.000.00--------------------------------1.00---------------------------------------------
.......................................................................................................................................................................................................GACCCCTTCGTCAAGCGTG................................191.000.00------------------------------------1.00-----------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGTAGA......................................................................................2311.0018.00-----1.00------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAAAAA.......................................................................................2411.0066.00---1.00--------------------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAT..........................................................................................1911.004.00---------------------------------1.00--------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGCG..........................................................................................2111.0010.00---------1.00--------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAA..........................................................................................2011.007.00--------1.00---------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGTGT.........................................................................................2311.007.00----1.00-------------------------------------------------------------------------
........................................................................................................GCATTGGGGAGTTTGTA.................................................................................................................................171.000.00-------------------------------------1.00----------------------------------------
........................................................................................................GCATTGGGGAGTTTGTTT................................................................................................................................181.000.00-------------------------1.00----------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGC.........................................................................................2211.00100.00----1.00-------------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGTG........................................................................................2411.001.00-------------------------------1.00----------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGTGAG......................................................................................2311.001.00-1.00----------------------------------------------------------------------------
........................................................................................................GCATTGGGGAGTTTGTGG................................................................................................................................181.000.00--------------------------------------1.00---------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGTT......................................................................................2411.005.00---------------------1.00--------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGAATT....................................................................................2611.0011.001.00-----------------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGTT........................................................................................2411.0087.00------1.00-----------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAAT.........................................................................................2211.0066.00----------1.00-------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAAAA........................................................................................2211.007.00------1.00-----------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAACA........................................................................................2311.0066.00---------1.00--------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGG.........................................................................................2311.0024.00---1.00--------------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGGTGAGAA........................................................................................2411.0024.00--------1.00---------------------------------------------------------------------
...................................................................................................................................................................................................................................AGGATGGGAGGAAGAACTC....191.000.00---------------1.00--------------------------------------------------------------
....................................................................................................................................................................................................................AGGTGTACCTGCTGCAGGATGATTA.............251.000.00------------------------------------------------------1.00-----------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAA..........................................................................................1911.004.00-1.00----------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGCG............................................................................................181.000.00---------1.00--------------------------------------------------------------------
..........................................................................AGGGCTGCAGGAGGTCCG..............................................................................................................................................................181.000.00------------------1.00-----------------------------------------------------------
................................................................................................................................................................TGAGTGTGACACTGGTAA........................................................................181.000.00-----------------1.00------------------------------------------------------------
........................................................................................................GCATTGGGGAGTTTGGG.................................................................................................................................171.000.00--------------------1.00---------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGTGAGTAAAA.....................................................................................2411.0018.00----1.00-------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGAGT.....................................................................................2511.001.00-----1.00------------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAT..........................................................................................2011.007.00------1.00-----------------------------------------------------------------------
............................................................................................................................................CTGGGCAGGGCTGTGGTGAGTGTTTT....................................................................................2611.005.00-----1.00------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGAGAT......................................................................................2511.00100.00-1.00----------------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGTGG..............................................................................................1811.001.00-1.00----------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGTGAGAAT.......................................................................................2411.00100.00--1.00---------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGGG............................................................................................1930.670.33--0.67---------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGA.............................................................................................1830.670.33---0.67--------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGAAA...........................................................................................2030.330.33-0.33----------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGAGG...........................................................................................2030.330.33---0.33--------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGCGAA..........................................................................................2130.330.33---0.33--------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGGGA............................................................................................1930.330.33----0.33-------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGG..............................................................................................1730.330.33-0.33----------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGTGAG...........................................................................................2060.170.17------0.17-----------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGTGGA...........................................................................................2060.170.17---0.17--------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGAAA............................................................................................1960.170.17---0.17--------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGTTGA...........................................................................................2060.170.17-----------0.17------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTGTGA............................................................................................1960.170.17------0.17-----------------------------------------------------------------------
..........................................................................................................................................AACTGGGCAGGGCTGT................................................................................................1660.170.17-----0.17------------------------------------------------------------------------
...........................................................................................................................................ACTGGGCAGGGCTGTG...............................................................................................1660.170.17--------------0.17---------------------------------------------------------------
.............................................................................................................................................TGGGCAGGGCTGTGGT.............................................................................................1690.110.11-----0.11------------------------------------------------------------------------

Antisense strand
CCCTCACCTGACGTGCTGTGTGAGCCTCAGTTTTCTCATCTGTGAAATGGGAAAAATAATAAAGGACCAATGGCAGGGCTGCAGGAGGTCACAGCAACAGTTAAGCATTGGGGAGTTTGGAGTCGGTGGGTGGAGCCAAACTGGGCAGGGCTGTGGTGAGTGAGTGTGACACTGGCCCTCACCTGTCCGCCTGCCCACAGACCCCTTCGTCAAGGTGTACCTGCTGCAGGATGGGAGGAAGATGAGCAAA
.............................................................................................................................................((((((((.....(((((((.((((...)))).))..)))))......)))))))).....................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................................................................ACGAAGGGGTCTGTGGGC........................................ 1818.008.00----------------8.00-------------------------------------------------------------
........................................................................................................................................................................................................GCAGGTACACCTTGACGAAGGGGT.......................... 2412.002.00-----------------------------2.00------------------------------------------------
................................................................................................................................................................................................GACGAAGGGGTCTGTGGGC....................................... 1911.001.00-------------------------------1.00----------------------------------------------
..............................................................................................................................................CTCACCACAGCCCTGCCC.......................................................................................... 1811.001.00--------------------------------------------------------1.00---------------------
...............................................................................................................................................................................................TGCCCACAGACCCCTCCA......................................... 181.000.00-----------------------------------------------------------------------1.00------
...............................................................................................................................................................................................TGCCCACAGACCCCTCCAA........................................ 191.000.00--------------------------1.00---------------------------------------------------
.......................................................................................................................................................................................AGGGGTCTGTGGGCAGGCGGACA............................................ 2311.001.001.00-----------------------------------------------------------------------------
...........................................................................................................TTGGGGAGTTTGGAGTG.............................................................................................................................. 171.000.00-----------------------------------------------------1.00------------------------
...................................................AAAAATAATAAAGGACCAAAAAT................................................................................................................................................................................ 231.000.00-----------------------------------------------------------------------------1.00
................................................................................................................................................................................................GTACACCTTGACGAAGGGGTCTGTGGGC.............................. 2811.001.00-----------------------------------1.00------------------------------------------
......................AGCCTCAGTTTTCTCATCTGTGAAATGGGT...................................................................................................................................................................................................... 301.000.00----------------------------------------------------------1.00-------------------
.............................................................................................................................................................GAGTGAGTGTGACACTAG........................................................................... 181.000.00------------------------1.00-----------------------------------------------------