ID: hsa-mir-6856
GENE: FUBP3(11)
chr9:133501551-133501800+


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(5)
B-CELL 		(5)
BRAIN 		(3)
BREAST 		(24)
CELL-LINE 		(1)
CERVIX 		(3)
FIBROBLAST 		(4)
HEART 		(2)
HELA 		(2)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ACAGGTCCTCCCCAGATACACCTGTGATCGGTGTTAATTCTGGCTTGAAAGAGCCCTTCAGAATGGGAAGTGTGGAAAGGTGCTAGGTTCTGATGGGTGGCATTGATTACATCCTGTCACTTAACCTCCTCCCTGGAAAAGAGAGGAGCAGTGGTGCTGTGGCAGTGGCAGAGGTCGCTACAGCCCTGTGATCTTTCCAGGAAAGAGACGGCTTTGGAGGCCTGGCAGCAGCCAGAGGAAGAGGTCGTGG
.....................................................................................................................................((((...((((...(((..((.((((((((...(((....))))))))))))))))..))))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029126(GSM416755)
143B. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038855(GSM458538)
D10. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGG........................................................................................24117.0017.003.00----1.00----2.003.002.00-1.001.001.00-------1.00----1.00----------1.00------------------------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCTGTGG........................................................................................2318.008.00-------2.00--1.00--2.00-1.00--------------1.001.00---------------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCAGA.................................................2317.006.002.00------------------2.00--1.00--------------1.001.00--------------------------
..............................................................................................................................................................................TCGCTACAGCCCTGTGATCTTTCCAG..................................................2616.006.00--------3.00------------------------1.00--1.00-------1.00--------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCAG..................................................2216.006.00---1.002.00------------1.00----1.00--1.00---------------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGGA.......................................................................................2514.0017.00-----2.00------------------1.00----------------------------------1.00-----
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTAA........................................................................................243.000.00------3.00----------------------------------------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCC....................................................2012.002.00---------1.00---------------------------------------------1.00---------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCA...................................................2112.002.00----------------------------1.00---------------------------1.00--------
...................................................................................................................................................................................ACAGCCCTGTGATCTTTCCAG..................................................2112.002.00---2.00-------------------------------------------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCATT.................................................2312.002.00---------2.00-------------------------------------------------------
..........................................................CAGAATGGGAAGTGTGGAAAGGTG........................................................................................................................................................................2412.002.00--2.00--------------------------------------------------------------
...................................................................................................................................................................................ACAGCCCTGTGATCTTTCCA...................................................2012.002.00---1.00-------------------------------1.00-----------------------------
.........................................................................................................................................................................................................................AGGCCTGGCAGCAGCCAGAGGAAGAGGTCGTGG3312.002.00-2.00---------------------------------------------------------------
......................................................................................................................................................................................................................TGGAGGCCTGGCAGCAGCCAGAGGAAG.........2712.002.00--------------------------------------------------1.00---------1.00----
...........................................................................................................................................AGAGAGGAGCAGTGGTGCTGTGGTAT.....................................................................................2612.008.00----2.00------------------------------------------------------------
...............................................................................................................................................................................................................................GGCAGCAGCCAGAGGAAG.........1812.002.00------------------2.00----------------------------------------------
..............................................................................................................................................................................TCGCTACAGCCCTGTGATCTTTCCAGA.................................................2711.006.00-----------------1.00-----------------------------------------------
.........................................................................................................................................................................................................AAAGAGACGGCTTTGGAGG..............................1911.001.00-----1.00-----------------------------------------------------------
...........................................CTTGAAAGAGCCCTTCAGAA...........................................................................................................................................................................................2011.001.00-----------------------------------------1.00-----------------------
..............................................................................................................................................................................TCGCTACAGCCCTGTGATCTTA......................................................221.000.00---------------------------------------------------1.00-------------
..................................................................................................................................................................................TACAGCCCTGTGATCACT......................................................181.000.00--------------------------------1.00--------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGGC.......................................................................................2511.001.001.00----------------------------------------------------------------
......................................................................................................................................................................................................AGGAAAGAGACGGCTTTGGAGGC.............................2311.001.00--1.00--------------------------------------------------------------
...............................................AAAGAGCCCTTCAGAATGGGAAGTGTGGAAAGGTG........................................................................................................................................................................3511.001.00---------------------------------------------------------1.00-------
.........................................................................................................................................................................................................................AGGCCTGGCAGCAGCCAGAGGAAG.........2411.001.00------------------------------------------1.00----------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGGTT......................................................................................2611.0017.00----------------------------------------------1.00------------------
..................CACCTGTGATCGGTGTTAATTCTGGC..............................................................................................................................................................................................................2611.001.00----------------------------------------------------------1.00------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCTGTGGC.......................................................................................2411.001.00--------------1.00--------------------------------------------------
........................................................................................................................................AAAAGAGAGGAGCAGTGGTGCTGCGGC.......................................................................................271.000.00--------------------1.00--------------------------------------------
...................................................................................................................................................................................ACAGCCCTGTGATCTTTCCAGA.................................................2211.002.00-------1.00---------------------------------------------------------
..........................................................CAGAATGGGAAGTGTGGAT.............................................................................................................................................................................191.000.00---------------------1.00-------------------------------------------
.............................................................................................................................................................................................................AGACGGCTTTGGAGGCCTGGCAGCAGC..................2711.001.00--------------------1.00--------------------------------------------
..................................................................................................................................................AGCAGTGGTGCTGTGGAACG....................................................................................201.000.00-----------------------1.00-----------------------------------------
.....................................................................................................................................TGGAAAAGAGAGGAGCAGTGGTGCT............................................................................................2511.001.00------------------------------------------------1.00----------------
..........................................................CAGAATGGGAAGTGTGGCT.............................................................................................................................................................................191.000.00---------------------1.00-------------------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTG.........................................................................................2311.001.00---------------------------------------------1.00-------------------
.........................................................................................................................................................................................................................................AGAGGAAGAGGTCGTGA171.000.00----------------1.00------------------------------------------------
..................................................................................................................................................................................TACAGCCCTGTGATCTTTCCAGT.................................................2311.006.00------------------------------------------------------1.00----------
......................................................................................................................................................................................................AGGAAAGAGACGGCTTTGGAGG..............................2211.001.00-1.00---------------------------------------------------------------
..............................................................ATGGGAAGTGTGGAAATTT.........................................................................................................................................................................191.000.00-----------------------------------------------1.00-----------------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCTGTGGA.......................................................................................2411.008.00-----------------------------------------------------1.00-----------
.....................................................................................................................................................................................................CAGGAAAGAGACGGCTTTGGA................................2111.001.00-1.00---------------------------------------------------------------
...........................................................................................................................................AGAGAGGAGCAGTGGTGCGT...........................................................................................201.000.00----------------------------------1.00------------------------------
.................................................................................................................................................................................................................GGCTTTGGAGGCCTGGCAGCAGCCAGAGGAAG.........3211.001.00-1.00---------------------------------------------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGTGGT.......................................................................................2511.0017.00-------------------------------------------1.00---------------------
.........................................................................................................................................................................................................AAAGAGACGGCTTTGGTAAG.............................201.000.00---------------------------1.00-------------------------------------
....................................................................................................................................CTGGAAAAGAGAGGAGCAGT..................................................................................................2011.001.00--1.00--------------------------------------------------------------
................................................................................................................................................................................................................CGGCTTTGGAGGCCTGGCAGCAGCCAGAGG............3011.001.00------------1.00----------------------------------------------------
......................................................................................................................................................................................................AGGAAAGAGACGGCTTTGGA................................2011.001.00-----------------------1.00-----------------------------------------
...........................................................................AAAGGTGCTAGGTTCTGCAG...........................................................................................................................................................201.000.00---------------------------------------1.00-------------------------
..........................................................................................................................................AAGAGAGGAGCAGTGGTGCTGCGGC.......................................................................................251.000.00-------------------------------------------------1.00---------------
.......................................................................................................................................................................................................GGAAAGAGACGGCTTTGGAG...............................2011.001.00----------------------------------------------------1.00------------
.......................................................................................................................................................................................................GGAAAGAGACGGCTTTGGA................................1911.001.00--1.00--------------------------------------------------------------
.........................................................................................................................................................................................................................................AGAGGAAGAGGTCGTGG1740.250.25--------------------------0.25--------------------------------------
...........................................................................................................................................................................................................................................AGGAAGAGGTCGTGG1560.170.17-------------------------------------------------------------0.17---
...........................................................................................................................................................................................................................................AGGAAGAGGTCGTGGGT1760.170.17---0.17-------------------------------------------------------------
...........................................................................................................................................................................................................................................AGGAAGAGGTCGTGGTAT1860.170.17---------------------------------------------------------------0.17-

Antisense strand
ACAGGTCCTCCCCAGATACACCTGTGATCGGTGTTAATTCTGGCTTGAAAGAGCCCTTCAGAATGGGAAGTGTGGAAAGGTGCTAGGTTCTGATGGGTGGCATTGATTACATCCTGTCACTTAACCTCCTCCCTGGAAAAGAGAGGAGCAGTGGTGCTGTGGCAGTGGCAGAGGTCGCTACAGCCCTGTGATCTTTCCAGGAAAGAGACGGCTTTGGAGGCCTGGCAGCAGCCAGAGGAAGAGGTCGTGG
.....................................................................................................................................((((...((((...(((..((.((((((((...(((....))))))))))))))))..))))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029126(GSM416755)
143B. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR038855(GSM458538)
D10. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................................................................................................CACAGGGCTGTAGCG............................................................ 1520.500.50-------------------------0.50---------------------------------------
.............................................TGAAGGGCTCTTTCA.............................................................................................................................................................................................. 1560.170.17--------------------------------------------------------------0.17--
..............................................CTGAAGGGCTCTTTC............................................................................................................................................................................................. 1590.110.11----------------------------------------------------------------0.11