ID: hsa-mir-6844
GENE: TATDN1(7)
chr8:125520706-125520893-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(6)
B-CELL
(41)
BREAST
(47)
CELL-LINE
(7)
CERVIX
(3)
FIBROBLAST
(7)
HEART
(9)
HELA
(3)
LIVER
(9)
OTHER
(20)
SKIN
(2)
XRN.ip

Sense strand
AAAATTACCAATGTTTCTTCATTGTCGAAACTCACATGCTGAATTTTTGGGTGAGTTAAAACCAAAGTCTCATTCAGAACTTAAGAATTTTGTAGAAATCAAGCTATTTGCTAAAAGTTCTTTGTTTTTAATTCACAGACATAATGAAAAGAAATAGAGATCGGTGTGTAGGGGGAGTGGTAAGTATA
............................................................................(((.((((((((.....((((....(((.....))).....))))..)))))))))))......................................................
............................................................................77...........................................................138................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189785SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189786SRR343335SRR343334SRR037936(GSM510474)
293cand1. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040028(GSM532913)
G026N. (cervix)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR040018(GSM532903)
G701N. (cervix)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)
SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)
GSM532886(GSM532886)
G850T. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR040035(GSM532920)
G001T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
.....................................................................................................................TTCTTTGTTTTTAATTCACAG..................................................2111171.001171.001001.00102.00-20.001.00--1.00-9.00--7.00----1.001.00----3.001.002.00--2.00-----1.001.001.00-------2.00---2.00-------1.00-----1.00--1.00--1.001.00--------------1.00---1.00---1.00---------1.00-----1.00---1.00----1.00-1.00--------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGA.................................................221755.00755.00414.0030.0086.0014.0014.00-20.0016.0012.005.0014.009.004.008.00-1.0012.002.00-1.003.00--2.006.00-6.002.001.001.002.001.002.002.001.00-2.001.001.002.00-3.00-1.00-1.00---2.002.002.001.001.002.001.001.00-1.00-2.001.001.001.002.001.001.002.00-1.00-1.00-1.00-1.001.00-1.00---1.001.00-1.001.00---1.00--1.00---1.00--1.00---1.00----1.001.00---1.001.001.00----1.001.00-1.001.001.00-1.001.00-1.00---------1.00----------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGT.................................................221303.001171.00222.0016.00-4.005.004.003.002.00-2.00-4.001.00----2.00-1.003.00--1.00-----3.003.00-2.00-2.001.00-1.001.001.00-----1.00---------1.00-----1.00------1.00---1.00-1.00------1.00---------1.00--1.00-1.00-1.00--1.00-1.00--------------1.00-1.00--1.00------1.00----1.00-1.00--------------
.....................................................................................................................TTCTTTGTTTTTAATTCACA...................................................20194.0094.0081.001.00-1.00-1.00--------------1.00----3.00--1.00--1.00----1.001.00---------------------------------------------------------1.00-------------------------------------------1.00------------
.................................................................................TAAGAATTTTGTAGAAATCAAGC....................................................................................23134.0034.00-----18.00--4.00--------3.00-2.00-2.00------------------3.00-----2.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGC.................................................22126.001171.0010.00--2.00-----------11.00---------------1.00---------------------1.00----1.00---------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAA..................................................21119.0094.0017.002.00------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACAG..................................................22117.0017.0014.00-------1.00-----1.00------------1.00----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACAGA.................................................23112.0012.003.00-8.00----------------------------------------1.00------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAT..................................................21111.0094.0010.00--------------------------------------------------------------------------------------1.00----------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCATTCAGAACTTAAGAATTTTGTAGAAATCAAGCT...................................................................................55111.0011.00------------------10.00-----------------------------------------------------------------------------------------------------------------1.00-------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACATA.................................................2218.0094.004.00-1.00-1.00-------1.00----------------1.00--------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGCATC..............................................2517.001171.00----------------------7.00---------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGAG................................................2316.00755.00---------------------5.00----------------------------------------------------------------------------------------------------------------------1.00-----------
..................................................GTGAGTTAAAACCAAAGT........................................................................................................................1816.006.00-------------4.00-------------------------------------------------1.00------------------------------------------------------------------------1.00---------------
.....................................................................................................................TTCTTTGTTTTTAATTCCCAG..................................................213.000.003.00-------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACA...................................................2113.003.002.00------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.................................................................................TAAGAATTTTGTAGAAATCAAGCTATTTGCTAAAAG.......................................................................3613.003.00-----------------------------------------------1.00----------------------2.00---------------------------------------------------------------------------------
......................................................................................................................TCTTTGTTTTTAATTCACAG..................................................2013.003.002.00----------------------1.00--------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCAC....................................................1923.003.001.50--0.50---------------0.50-----------------------------------------------------------------------------------------------------------------------------0.50------
..................................................GTGAGTTAAAACCAAAGTCTC.....................................................................................................................2113.003.00-------------------------------------------1.00-----------------------------------1.00---------------------------------------------------------------1.00--------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGG.................................................2212.001171.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................TCTTTGTTTTTAATTCACAGT.................................................2112.003.00--------------------2.00-----------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................GAAATAGAGATCGGTGTGTAGGGGGAGTGGTGC.....332.000.00--------------2.00-----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCATAG..................................................2152.000.401.800.20------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACACA.................................................2212.0094.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGTA................................................2312.001171.001.00--------------------------------------------1.00----------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACAGT.................................................2312.0017.001.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACAC..................................................2212.003.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................CGGTGTGTAGGGGGAGTGGT.......2012.002.00--------------2.00-----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGACA...............................................2412.002.00-------2.00------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGAGATCGGTGTGTAGGGGGAGTGG........2512.002.00--------------2.00-----------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................AAATAGAGATCGGTGTGTAGGG...............2212.002.00-------------------1.00---------------1.00--------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................CGGTGTGTAGGGGGACCAG........1922.000.50-----------------------------------------------------------------------------1.00-----------------------------------1.00--------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAC..................................................2112.0094.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCATTCA................................................................................................................2612.002.00-----------------------------------------------------------------------------------------1.00---------------------1.00----------------------------------------
........................................................................................................................TTTGTTTTTAATTCACAG..................................................1831.331.331.00----------------0.33--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCGTA...................................................201.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................CTTTGTTTTTAATTCACAGA.................................................2011.001.00-----------------------------------1.00--------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGAGATCGGTGTGTAGGGGG.............2011.001.00------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATCTCG....................................................201.000.00-------------------------------------------------------------------------------------------------------------------------------------1.00------------------
.....................................................................................................................TTCTTTGTTTTTAATTCATAGA.................................................2251.000.400.400.20------------------------0.20---------------------------------------------------------------------------------------------------------------------0.20-------
.................................................................................................................................................................CGGTGTGTAGGGGGAGTGGTGCA....2311.002.00--------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
...........................................................................AGAACTTAAGAATTTTGTAGAAATCAAGC....................................................................................2911.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCTTG...................................................201.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCATTCAGA..............................................................................................................2811.001.00----1.00---------------------------------------------------------------------------------------------------------------------------------------------------
..............................CTCACATGCTGAATTTTTGT..........................................................................................................................................201.000.00------------------------------------------------------------------------------------------------------------------------------------------1.00-------------
...........................................TTTTTGGGTGAGTTAAAAAA.............................................................................................................................201.000.00----------------------------------------------------1.00---------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGGGGGAGTGGTGCA....321.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
..........................................................................CAGAACTTAAGAATTCTG................................................................................................181.000.00------------------------------------------------------------------1.00-------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGG................2011.001.00------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................GATCGGTGTGTAGGGGGA............1811.001.00------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
..................................................................................AAGAATTTTGTAGAAATCAAGCT...................................................................................2311.001.00---------------------------------1.00----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................ATAGAGATCGGTGTGTAGG................1911.001.00---------------------------------1.00----------------------------------------------------------------------------------------------------------------------
.......................................................................................................................CTTTGTTTTTAATTCACAG..................................................1911.001.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................TTCAGAACTTAAGAATTTTGTA..............................................................................................2211.001.00-----------------------------------------------------------------------------------------------------------1.00--------------------------------------------
......................................................................................................................TCTTTGTTTTTAATTCACAGA.................................................2111.001.00--------------------------------------------------------------------------------1.00-----------------------------------------------------------------------
.......................................................................................TTTTGTAGAAATCAAGCTATTTGCTAAAAG.......................................................................3011.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACATT.................................................2311.003.00----1.00---------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTTACA...................................................201.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCA....................................................................................................................2211.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................AAATAGAGATCGGTGTGTAGGGGGAGTGGTGCAT...341.000.00-----------------------------------------------1.00--------------------------------------------------------------------------------------------------------
......................................................................................ATTTTGTAGAAATCAAGCTATTTGCTAAA.........................................................................2911.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCTCAG..................................................211.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTTAAAACCAAAGTCTCATT..................................................................................................................2411.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.................................................................................TAAGAATTTTGTAGAAATCAAGCT...................................................................................2411.001.00---------------------------------------------------------------------------------------------------------1.00----------------------------------------------
...................................................................................AGAATTTTGTAGAAATCAAG.....................................................................................2011.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAGATC...............................................2411.00755.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCTCA...................................................201.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AGAAATAGAGATCGGTGTGTAGGGGG.............2611.001.00--------------------------------------------1.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................TAATGAAAAGAAATAGAGATCGG........................2311.001.00----------------------------------------------------------------------------------------------------------1.00---------------------------------------------
......................................................................................ATTTTGTAGAAATCAAGCT...................................................................................1911.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACAAT.................................................2211.0094.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------------------
....................................................................................................................GTTCTTTGTTTTTAATTCACCG..................................................221.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACGG..................................................2121.003.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................GAGATCGGTGTGTAGGGGGAGTGGTGC.....271.000.00--------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AAAAGAAATAGAGATCGGA.......................191.000.00---------------------------------------------------------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................AATGAAAAGAAATAGACGT...........................191.000.00-------------------------------1.00------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGGG...............2111.001.00--------------------------------------------------------------------------------------------------------------------------------------1.00-----------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGGGGGAGTGG........2811.001.00--------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTAGGGGGAGTGGCAAG....3211.001.00-----------------------------------------------------------1.00--------------------------------------------------------------------------------------------
............................................................................................................................................................GAGATCGGTGTGTAGGGGGAGT..........2211.001.00---------------------------------------------------------------------------------------------------1.00----------------------------------------------------
..................................................................................AAGAATTTTGTAGAAATCAAGC....................................................................................2211.001.00-------------------------------------------------------------------------------------------------------------------------------1.00------------------------
...........................................................................................................................................................AGAGATCGGTGTGTAGGGGGAGTGGCG......2711.002.00-----------------------------------------------------------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................AGAGATCGGTGTGTAGGGGGA............2111.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCGCAG..................................................211.000.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACTGG.................................................2220.503.000.50-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACCGA.................................................2220.503.00-----------------------------------------------------------------------------------------------------------------------------------------------------0.50--
.........................................................................................................................................................ATAGAGATCGGTGTGTAG.................1820.500.50--------------0.50-----------------------------------------------------------------------------------------------------------------------------------------
..............TTCTTCATTGTCGAAACTCACATG......................................................................................................................................................2420.500.50---------------------------------------------------------------------------------------------------------------------------------------------------0.50----
.......................GTCGAAACTCACATGCTGAATTTTTG...........................................................................................................................................2620.500.50--------0.50-----------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACCG..................................................2120.503.000.50-------------------------------------------------------------------------------------------------------------------------------------------------------
..........................GAAACTCACATGCTGAATTTTTGG..........................................................................................................................................2420.500.50------------------------------------------------------------------------0.50-------------------------------------------------------------------------------
..................................................................................................................................................AAAAGAAATAGAGATCGGTG......................2020.500.50--------------------------------------------------------------------------------------------------------------------------------------------------0.50-----
.....................................................................................................................................................AGAAATAGAGATCGGTGTG....................1920.500.50------------------------------------------------------------------------------------------------------------------------------------------------------0.50-
.......................GTCGAAACTCACATGCTGAA.................................................................................................................................................2020.500.50---------------------------------------------------------0.50----------------------------------------------------------------------------------------------
.................................................................................................................................................................CGGTGTGTAGGGGGA............1520.500.50-----------------0.50--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACTGA.................................................2220.503.000.50-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACGTT.................................................2220.503.000.50-------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................TTTGTTTTTAATTCACAGA.................................................1920.500.50---------------------------0.50----------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................AATAGAGATCGGTGTGTA..................1820.500.50---------------------------------------------------------0.50----------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACCGC.................................................2220.503.000.50-------------------------------------------------------------------------------------------------------------------------------------------------------
...........TGTTTCTTCATTGTCGAAACTC...........................................................................................................................................................2220.500.50-------------------------------------------------------------------------------------------------------------------------------------------------------0.50
..............TTCTTCATTGTCGAAACTCACATGCTGA..................................................................................................................................................2820.500.50----------------------------------------------0.50---------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCACGGA.................................................2220.503.000.50-------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................CTTAAGAATTTTGTAGAAA..........................................................................................1920.500.50-----------------------------------------------------------------------0.50--------------------------------------------------------------------------------
......................................................................................................................................................GAAATAGAGATCGGTGTGTAG.................2120.500.50--------------0.50-----------------------------------------------------------------------------------------------------------------------------------------
.........................CGAAACTCACATGCTGAA.................................................................................................................................................1820.500.50----------------------------------------------------------------------------------------------------------------------------------------------------0.50---
.....................................................................................................................TTCTTTGTTTTTAATTCA.....................................................1850.400.400.20------------------------0.20------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCAAAGA.................................................2250.400.400.40-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCAAAG..................................................2150.400.400.200.20------------------------------------------------------------------------------------------------------------------------------------------------------
.................................ACATGCTGAATTTTTGG..........................................................................................................................................1730.330.33-------------------------------------------------------------------------0.33------------------------------------------------------------------------------
...............................................................................CTTAAGAATTTTGTAGAA...........................................................................................1830.330.33------------------------------------------------------------------------------------------------------------------------------------------------0.33-------
.........................................................................................................................TTGTTTTTAATTCACAGA.................................................1830.330.33-------------------------------------0.33------------------------------------------------------------------------------------------------------------------
..................................CATGCTGAATTTTTGG..........................................................................................................................................1640.250.25-----------------0.25--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCATTG..................................................2150.200.400.20-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCATAGT.................................................2250.200.400.20-------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TTCTTTGTTTTTAATTCAAAT..................................................2150.200.400.20-------------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................TGTTTTTAATTCACAGA.................................................1790.110.110.11-------------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
AAAATTACCAATGTTTCTTCATTGTCGAAACTCACATGCTGAATTTTTGGGTGAGTTAAAACCAAAGTCTCATTCAGAACTTAAGAATTTTGTAGAAATCAAGCTATTTGCTAAAAGTTCTTTGTTTTTAATTCACAGACATAATGAAAAGAAATAGAGATCGGTGTGTAGGGGGAGTGGTAAGTATA
............................................................................(((.((((((((.....((((....(((.....))).....))))..)))))))))))......................................................
............................................................................77...........................................................138................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189785SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189786SRR343335SRR343334SRR037936(GSM510474)
293cand1. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040028(GSM532913)
G026N. (cervix)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR040018(GSM532903)
G701N. (cervix)
SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)
SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)
GSM532886(GSM532886)
G850T. (cervix)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR040035(GSM532920)
G001T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
................................................................................TTAAGAATTTTGTAGCG........................................................................................... 173.000.00---------------------------2.001.00---------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................TGAAAAGAAATAGAGATAAC........................ 201.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................GGGAGTGGTAAGTATAT 171.000.00----------------------------------------------------------------------------------------------------------------------------------------------1.00---------