ID: hsa-mir-6830
GENE: P4HA2(2)
chr5:131553492-131553741-


(1)
AGO1.ip
(3)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(11)
BRAIN
(5)
BREAST
(13)
CELL-LINE
(3)
CERVIX
(9)
HEART
(4)
HELA
(1)
KIDNEY
(2)
LIVER
(3)
OTHER
(1)
OTHER.ip
(15)
SKIN
(1)
XRN.ip

Sense strand
CCTCTTTCTTCCTGAAGTTGCGAGATAGAGCCCCATGAGTGCCTAGGCCCCCTTTAACTCCAAGTCCCCATAATCCTCAGAGAGCTGACATGTTCTTATCCCAGGGGACTTGCTTCTGTGCTGGTATTCTGTGCCCCAAGGAAGGAGGCTGGACATCCCTCATCTGTTTCTCACTGGTGTCTTTCTTCTCTCCCTTGCAGGGCACATGACTGACCTGATTTATGCAGAGAAAGAGCTGGTGCAGTCTCTG
........................................................................................................................................(((((.((((((..(((((((..................)))))))..)))).)).))))).....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577741(Rovira)
total RNA. (breast)
GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038854(GSM458537)
MM653. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR040017(GSM532902)
G645T. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATC.............................................................................................22123.0023.003.003.002.00--2.00-1.00--2.002.002.00-1.001.00---1.00----------------------------1.001.00-1.00-----------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCAG..................................................23119.0019.00-1.00-2.00-1.001.00-2.00-------1.00--------1.00-2.00--1.00---1.001.00----1.00-------------1.00-----1.001.001.00------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACAT..............................................................................................21118.0018.002.00-3.00-3.00-1.00--2.00--1.00-----------1.00--------1.00--1.00--------1.001.00---1.00------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACAT..............................................................................................2218.008.00---1.00--1.00---1.001.00--1.001.00--1.00----1.00---------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACATC.............................................................................................2317.007.00-1.00----1.00-1.00--------2.00-1.00----1.00--------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGACA...............................................................................................2114.004.00---------1.00---1.00----1.00-------1.00------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCA...................................................2214.004.00-------2.00-------------1.00--------------------1.00--------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGC....................................................2114.004.00-----1.00--------------------------1.00-----1.00------------------1.00-----------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAGT.................................................2213.001.00-1.00------1.00-------------------------------------------1.00----------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATCA............................................................................................2313.0023.001.00-------------------1.00----1.00-------------------------------------------
.....................................................................................................................................CCCCAAGGAAGGAGGCTGGACA...............................................................................................2212.002.00---------------------1.00---------1.00-------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATCT............................................................................................2312.0023.00--------------1.00--------------------------------------------------1.00---
......................................................................................................................................CCCAAGGAAGGAGGCTGGACATCA............................................................................................2412.007.001.00-------------------------1.00------------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACA...............................................................................................2012.002.00-------------1.00-1.00-----------------------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATT.............................................................................................2212.0018.00-------------1.00--1.00----------------------------------------------------
..................................................................................................................................................................................................................TGACCTGATTTATGCAGACAA...................212.000.00----------------------2.00----------------------------------------------
.....................................................................................................................................CCCCAAGGAAGGAGGCTGGACATC.............................................................................................2412.002.00---------------------------------------1.00-1.00---------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTGCAGT.................................................2411.0019.00---1.00-----------------------------------------------------------------
......................................................................................................................................CCCAAGGAAGGAGGCTGGTCAT..............................................................................................221.000.00----------------1.00----------------------------------------------------
................................................................................................................................................................................................................ACTGACCTGATTTATGC.........................1711.001.00-----------------------------------------------------------1.00---------
........................................................................................................................................CAAGGAAGGAGGCTGGACATA.............................................................................................211.000.00-------------------------------------------------------1.00-------------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAGTAG...............................................2411.001.00--------------------------------------------1.00------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATAGA...........................................................................................2411.0018.00-------1.00-------------------------------------------------------------
..................................................................................................................................................GGCTGGACATCCCTCATCTGT...................................................................................2111.001.00---------------------------------------------------------------1.00-----
.......................................................................................................................................CCAAGGAAGGAGGCTGGACATA.............................................................................................2211.0018.00-----------------------------------------------1.00---------------------
...........................................................................................................................................................................................................ACATGACTGACCTGATTTATGCAGAGAAAG.................3011.001.00--------------------1.00------------------------------------------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACAA..............................................................................................2111.002.001.00--------------------------------------------------------------------
...................................................................................................................................................................................TCTTTCTTCTCTCCCTTGCAG..................................................2111.001.00---1.00-----------------------------------------------------------------
..........CCTGAAGTTGCGAGATAGAGC...........................................................................................................................................................................................................................2111.001.00-----------------------------------------------------1.00---------------
.......................................................................................................................................CCAAGGAAGGAGGCTGGACACA.............................................................................................2211.002.00-----------------------1.00---------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCTTACA...................................................221.000.00----------------------------------------------------------1.00----------
..........................................................................................................................................................................................................CACATGACTGACCTGATTTATGCAGA......................2611.001.00----1.00----------------------------------------------------------------
.................................................................................................................................................................................TGTCTTTCTTCTCTCCCGCAG....................................................211.000.00--------------------------------------------------------1.00------------
..............................................................................................................................................................................................................TGACTGACCTGATTTATGCAGAGAAAGAGCTGGT..........3411.001.00-----------------------------1.00---------------------------------------
.......................................................................................................................................................................................................GGGCACATGACTGACCTGATTTATGCAGAGAA...................3211.001.00-------------------------------------------1.00-------------------------
.........................................................................................................................................AAGGAAGGAGGCTGGACTTAC............................................................................................211.000.00----------------------------1.00----------------------------------------
........................................................................................................................................CAAGGAAGGAGGCTGGACA...............................................................................................1920.500.50----------------------------0.50----------------------------------------
.........................................................................................................................................AAGGAAGGAGGCTGGACAT..............................................................................................1930.330.33-------------------------------------------------------------------0.33-
...................................................................................................................CTGTGCTGGTATTCT........................................................................................................................1560.170.17--------------------------------------------------------------------0.17

Antisense strand
CCTCTTTCTTCCTGAAGTTGCGAGATAGAGCCCCATGAGTGCCTAGGCCCCCTTTAACTCCAAGTCCCCATAATCCTCAGAGAGCTGACATGTTCTTATCCCAGGGGACTTGCTTCTGTGCTGGTATTCTGTGCCCCAAGGAAGGAGGCTGGACATCCCTCATCTGTTTCTCACTGGTGTCTTTCTTCTCTCCCTTGCAGGGCACATGACTGACCTGATTTATGCAGAGAAAGAGCTGGTGCAGTCTCTG
........................................................................................................................................(((((.((((((..(((((((..................)))))))..)))).)).))))).....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR029125(GSM416754)
U2OS. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577741(Rovira)
total RNA. (breast)
GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR038854(GSM458537)
MM653. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR040017(GSM532902)
G645T. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
...................................................................................................................................................................................................................GACCTGATTTATGCATACA.................... 191.000.00------------------------------------------------------------------1.00--
.................................................................CCCCATAATCCTCAGATAGG..................................................................................................................................................................... 201.000.00----------------------------------------------------------------1.00----
.............................................................................................................................................................................CTGGTGTCTTTCTTCAGCA.......................................................... 191.000.00-------------------------------------1.00-------------------------------