ID: hsa-mir-6814
GENE: RIPK4(4)
chr21:43166882-43167131-


(1)
AGO1.ip
(4)
AGO2.ip
(1)
B-CELL
(13)
BREAST
(23)
CELL-LINE
(3)
CERVIX
(4)
HEART
(1)
HELA
(7)
LIVER
(2)
OTHER
(1)
RRP40.ip
(25)
SKIN
(2)
UTERUS

Sense strand
GAAACTAGAGAGCATGGCGCACCATGAGGGTGAGGGTTACAGGAAGCTCTGCCTTTGAAACGGAGTGGGGGAGCCGTCTCCCTGGGGTGGTGTGGGGATGGCCCCATTGTGGCCCCCGGCGAGTGTGTCGTTTCCTCCCAAGGGTGAGATGCTGCCACCCAGCCCTGCAGAGCCCCTGACTCGCATCCTTCCCTTGGCAGATGAGAAGAACATCCTGCACATCATGGTGAAGGTGGTGAAGGGCCACCGC
......................................................................................................................................((.(((((((...(((((.((......))....(((.....)))....)))))...))))))).))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189785SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR038859(GSM458542)
MM386. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038857(GSM458540)
D20. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCCA.............................................................................................22120.0020.00---7.00-2.002.00-----1.00-------1.00---2.00-------------1.00---1.00----------------------------1.001.00----1.00---------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCAG..................................................22118.0018.002.00----2.00-2.00--1.00--2.00---1.00---1.00------1.00------------1.00-------------1.00-1.00-----1.00-1.00----1.00----------------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCAGT.................................................23116.0018.00-------2.001.00-----2.00-1.001.00---------1.00---1.00--1.00------------1.00-------------1.00-----------1.00--1.00--1.00-1.00-----
..................................................................................................................................................................................ACTCGCATCCTTCCCTTG......................................................1818.008.004.00-3.00-----------------1.00------------------------------------------------------------------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCAT..................................................2216.006.00----------1.00-1.00------------1.00--1.00-----------------------1.00-------------1.00--------------------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCA...................................................2116.006.00------2.00-----1.00--1.00-----------------1.00----------------------------------------------1.00------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCAA..................................................2215.006.00---------------1.001.00------------------------------------------1.00------------------1.00----1.00---
...................................................................................................................................................................................CTCGCATCCTTCCCTTGGCAGT.................................................2214.002.00---------3.00--------------------------1.00--------------------------------------------------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCAGC.................................................2313.0018.00----3.00----------------------------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCCAT............................................................................................2312.0020.00-----------------------------------1.00---------1.00-----------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCTAT............................................................................................2312.002.00-----------------------2.00---------------------------------------------------------------
...................................................................................................................................................................................CTCGCATCCTTCCCTTGGCA...................................................2012.002.00----------------------2.00----------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCCAA............................................................................................2312.0020.00----1.00----------1.00-----------------------------------------------------------------------
...................................................................................................................................................................................CTCGCATCCTTCCCTTGGCAG..................................................2112.002.00---2.00-----------------------------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGC...............................................................................................2012.002.00--------2.00------------------------------------------------------------------------------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCAGA.................................................2312.002.00-----------------------------------------------------1.00---------------1.00-----------------
..AACTAGAGAGCATGGCGCACCATGAGGGT...........................................................................................................................................................................................................................2911.001.00---------------------------------------------------------------------------1.00-----------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCAGG.................................................2311.0018.00----------1.00----------------------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCCATTGA.........................................................................................2611.0020.00----1.00----------------------------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCCATTT..........................................................................................2511.0020.00----------------------------------------------------------------1.00----------------------
................................................................................................................................................................................TGACTCGCATCCTTCCCTTGGCA...................................................2311.001.00-----1.00---------------------------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCCATTAA.........................................................................................2611.0020.00----1.00----------------------------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGTAA.............................................................................................221.000.00--------------1.00------------------------------------------------------------------------
...............................................................................................................................................................................................................................ATGGTGAAGGTGGTGAAGG........1911.001.00---------------------1.00-----------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCAA.............................................................................................2211.002.00----------------------------------------1.00----------------------------------------------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGGCCA..................................................221.000.00----------------------------------------------1.00----------------------------------------
...........................................................................................................................................................................................................................CATCATGGTGAAGGTGG..............1711.001.00----------------------------------------------------------------------------------1.00----
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCCAGT...........................................................................................2411.0020.00------------------------------------------------------------1.00--------------------------
.....................................................................................................................GGCGAGTGTGTCGTTT.....................................................................................................................1611.001.00-----------1.00---------------------------------------------------------------------------
....................................................CTTTGAAACGGAGTGGGG....................................................................................................................................................................................1811.001.00-------------------------------------------1.00-------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCCATG...........................................................................................2411.0020.00-------------1.00-------------------------------------------------------------------------
...........................................AAGCTCTGCCTTTGAACCTG...........................................................................................................................................................................................201.000.00----------------1.00----------------------------------------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGCA..............................................................................................2111.002.00--------------------------------------------------------------------------1.00------------
........................................AGGAAGCTCTGCCTTTGAAACGGA..........................................................................................................................................................................................2411.001.00------------------------------------------------------1.00--------------------------------
..................................................................................................................................................................................ACTCGCATCCTTCCCTTGG.....................................................1911.001.00------------------------------------------------1.00--------------------------------------
.......................................................................................................................................TCCCAAGGGTGAGATGCTGAAA.............................................................................................221.000.00---------------------------------------------------1.00-----------------------------------
..............................................................................................................................................................................................................................CATGGTGAAGGTGGTGAAGGGC......2211.001.00-------------------------------------------------------------------1.00-------------------
...............................................................................CCCTGGGGTGGTGTGG...........................................................................................................................................................1690.110.11--------------------------------------------------------------------------------------0.11

Antisense strand
GAAACTAGAGAGCATGGCGCACCATGAGGGTGAGGGTTACAGGAAGCTCTGCCTTTGAAACGGAGTGGGGGAGCCGTCTCCCTGGGGTGGTGTGGGGATGGCCCCATTGTGGCCCCCGGCGAGTGTGTCGTTTCCTCCCAAGGGTGAGATGCTGCCACCCAGCCCTGCAGAGCCCCTGACTCGCATCCTTCCCTTGGCAGATGAGAAGAACATCCTGCACATCATGGTGAAGGTGGTGAAGGGCCACCGC
......................................................................................................................................((.(((((((...(((((.((......))....(((.....)))....)))))...))))))).))..................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189785SRR189783SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR038859(GSM458542)
MM386. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038860(GSM458543)
MM426. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038857(GSM458540)
D20. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GCCTTTGAAACGGAGCTGA..................................................................................................................................................................................... 1928.000.00-14.009.00---------------1.00-------2.00---1.00-------------------------------1.00------------------------
.................................................................................................................................................................................................................................GGTGAAGGTGGTGAACAGC...... 1924.000.0013.00-3.00-1.00-------------1.002.00-------1.00-2.00--------------------------1.00------------------------------
.................................................................................................................................................................................................................................GGTGAAGGTGGTGAACAG....... 1819.000.0015.001.00-----------------------------------1.00-1.00----1.00------------------------------------------
.................................................................................................................................................................................................................................GGTGAAGGTGGTGAACAGA...... 192.000.00-------------------------1.00--------------------------------1.00----------------------------
.................................................................................................................................................................................................TTGGCAGATGAGAAGCCTC...................................... 192.000.00-----------2.00---------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTGAAGGTGGTGAACAT....... 181.000.00--------------------------------------------------1.00------------------------------------
...............................................................................................................................................................................................................................ATGGTGAAGGTGGTGAACCAT...... 211.000.001.00--------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ATGGTGAAGGTGGTGAATTAG...... 211.000.001.00--------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGTGAAGGTGGTGAAGAGC...... 191.000.001.00--------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ATGGTGAAGGTGGTGAAACTG...... 211.000.001.00--------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ATGGTGAAGGTGGTGAACCAC...... 211.000.001.00--------------------------------------------------------------------------------------
....................................................................................................................................................................CTGCAGAGCCCCTGACTATGC................................................................. 211.000.00--------------------------------------------------------------------1.00------------------
.................................................................................................................................................................................................................................GGTGAAGGTGGTGAACATC...... 191.000.00----1.00----------------------------------------------------------------------------------
..................................................GCCTTTGAAACGGAGCTTA..................................................................................................................................................................................... 191.000.00-1.00-------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ATGGTGAAGGTGGTGAACTTG...... 211.000.001.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................GAAGGTGGTGAAGGGCAG.... 181.000.00--------------------------------1.00------------------------------------------------------
..................................................GCCTTTGAAACGGAGTCTGA.................................................................................................................................................................................... 201.000.00------------------------------1.00--------------------------------------------------------
................................................................................................................................................................................................................................TGGTGAAGGTGGTGAACCC....... 191.000.00-------------------------------------------------1.00-------------------------------------
.........................................................................................................................................................................GCGAGTCAGGGGCTC.................................................................. 1560.170.17-------------------------------------------------------------------------------------0.17-
........................................................................CCCCAGGGAGACGGC................................................................................................................................................................... 1560.170.17------------------------------------------------------------------------------------0.17--