ID: hsa-mir-4641
GENE: FOXP4(16)
chr6:41566327-41566576+


(2)
B-CELL 		(1)
BRAIN 		(17)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(1)
KIDNEY 		(6)
LIVER 		(2)
OTHER 		(8)
SKIN

Sense strand
CCCAGAGCAGTCTCTGCCCCAGGACCAGCTTTTCTTTGAAGAGAGCCCTAGGGGAGATCAGCCCTCAGGTCTGATGGGATCCTGGGGAGGGGGCTGTGGGCACCCCACTGTGCCCCAGAGTTCTGGGTGAGTTTGGGGGGCAGGGGGCAGAGGGCATCAGAGGACAGCCGCCTGGTGCCCATGCCATACTTTTGCCTCAGCCACCAGGTGCAGGTGAAGGAGGAGCCAGCAGAGGCAGAGGAAGACAGGC
.................................................................................................................(((((....))))).........((((((((.((((..(((((((((.((....))..))))))))).))))...))..))))))....................................................
..............................................................................................................111......................................................................................200................................................
SizePerfect hitTotal NormPerfect NormTAX577740(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577579(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785TAX577741(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038857(GSM458540)
D20. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCT.....................................................22118.0018.004.002.001.001.001.00--2.00---------1.00----1.00---1.00------------1.00-----------1.00----1.001.00----
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCA...................................................24113.0013.002.00--1.002.00----------1.001.00-----------1.00------------1.00-----1.001.001.00--------1.00---
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCAGT.................................................2619.007.00----1.00---1.00-----2.00---2.00--1.00----------1.00-------1.00---------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTC....................................................2319.009.001.00-1.001.00------1.00-1.00-------1.00------------1.00-1.00------------------1.00-------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCAG..................................................2517.007.00-----1.00------------------1.00---------1.00--1.001.00----1.00-1.00----------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCC......................................................2114.004.00--1.00-----1.00-----------------------------------------1.00--1.00--------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCT...................................................2414.009.00-1.00-----1.00--------1.00--------------1.00------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGC.......................................................2014.004.00-1.001.00---------------------------------------1.00---------1.00---------
...................................................................................................................................................................................................................................AGCAGAGGCAGAGGAAGAC....1912.002.00----------2.00---------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTG........................................................1912.002.00------1.00----------------1.00--------------------------------------
...................................................................................................................CAGAGTTCTGGGTGAGTTT....................................................................................................................1912.002.00-------------2.00------------------------------------------------
.....................................................................................................................................................................................TGCCATACTTTTGCCTTAG..................................................191.000.00-----------------1.00--------------------------------------------
............................................................................................................................................................................................CTTTTGCCTCAGCCACCAGGTGC.......................................2311.001.00-------------------------------------------------------1.00------
.......................................................................................AGGGGGCTGTGGGCA....................................................................................................................................................1501.001.00-------------------------1.00------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTCATT.................................................2611.0013.00--------1.00-----------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTG.........................................................181.000.00-----------1.00--------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGA.......................................................2011.002.00---------------1.00----------------------------------------------
..................................................................................................................................................................................CCATGCCATACTTTTGCCT.....................................................1911.001.00------------------------------1.00-------------------------------
.......................................................................TGATGGGATCCTGGGGAGGGGGCTGTGGGCAC...................................................................................................................................................3211.001.00------------1.00-------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTT.........................................................1811.001.00--1.00-----------------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTAA...................................................2411.0018.00---1.00----------------------------------------------------------
....................................................................................................................................................................................................................................GCAGAGGCAGAGGAAGAC....1811.001.00---------1.00----------------------------------------------------
.............................................................................................................................................................................................................AGGTGCAGGTGAAGGAGGAGCC.......................2211.001.00----------------------------------------------1.00---------------
...................................................GGGAGATCAGCCCTCAG......................................................................................................................................................................................1711.001.00---------------------------1.00----------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCTA....................................................2311.0018.00-1.00------------------------------------------------------------
..............................................................................................................................................................AGAGGACAGCCGCCTGG...........................................................................1711.001.00-------------------1.00------------------------------------------
.............................................................................................................................................................................................................AGGTGCAGGTGAAGGAGGA..........................1911.001.00---------1.00----------------------------------------------------
...................................................................................................................................................................................................................AGGTGAAGGAGGAGCCAGCAGAGGCAG............2711.001.00-----1.00--------------------------------------------------------
..............................................................................................................................................................................................................GGTGCAGGTGAAGGAGGAGCCAG.....................2311.001.00---------1.00----------------------------------------------------
....................................................................................................CACCCCACTGTGCCCCCT....................................................................................................................................181.000.00-----------------------------1.00--------------------------------
............................................................................................................................................................................................................................AGGAGCCAGCAGAGGCAGAGGAAGACAGTCAG321.000.00-----1.00--------------------------------------------------------
...............................................................................................................................................................................TGCCCATGCCATACTTTTGCCCAGT..................................................2511.004.00--------------------------------------------1.00-----------------
.........................................................................................................................................................GCATCAGAGGACAGCC.................................................................................1670.140.14------------------------------------------------------------0.14-
.............CTGCCCCAGGACCAGC.............................................................................................................................................................................................................................1680.120.12-------------------------------------------------------------0.12

Antisense strand
CCCAGAGCAGTCTCTGCCCCAGGACCAGCTTTTCTTTGAAGAGAGCCCTAGGGGAGATCAGCCCTCAGGTCTGATGGGATCCTGGGGAGGGGGCTGTGGGCACCCCACTGTGCCCCAGAGTTCTGGGTGAGTTTGGGGGGCAGGGGGCAGAGGGCATCAGAGGACAGCCGCCTGGTGCCCATGCCATACTTTTGCCTCAGCCACCAGGTGCAGGTGAAGGAGGAGCCAGCAGAGGCAGAGGAAGACAGGC
.................................................................................................................(((((....))))).........((((((((.((((..(((((((((.((....))..))))))))).))))...))..))))))....................................................
..............................................................................................................111......................................................................................200................................................
SizePerfect hitTotal NormPerfect NormTAX577740(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577579(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785TAX577741(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038857(GSM458540)
D20. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................GTGAGTTTGGGGGGCAT........................................................................................................... 171.000.00------1.00-------------------------------------------------------
..................................................................AGGTCTGATGGGATCCGGC..................................................................................................................................................................... 191.000.00------------------------------------1.00-------------------------
...........CTCTGCCCCAGGACCCTCG............................................................................................................................................................................................................................ 191.000.00------1.00-------------------------------------------------------
............................................................................................................................................................................................................CAGGTGCAGGTGAAGGACCTG......................... 211.000.00-----------1.00--------------------------------------------------
...................................................................................................................TCACCCAGAACTCTG........................................................................................................................ 1570.140.14-----------------------------------------------------------0.14--