ID: hsa-mir-1231
GENE: NAV1(18)
chr1:201777689-201777880+


(1)
AGO1.ip
(1)
AGO2.ip
(10)
BRAIN
(1)
BREAST
(10)
CELL-LINE
(1)
FIBROBLAST
(3)
HEART
(1)
HELA
(3)
OTHER
(13)
SKIN
(1)
XRN.ip

Sense strand
ACTCTGCCCACCAACTGGATCAGCTTCGGGAGACCATGCACAACATGCAGGTCAGTGTCTGGGCGGACAGCTGCAGGAAAGGGAAGACCAAGGCTTGCTGTCTGTCCAGTCTGCCACCCTACCCTGTCTGTTCTTGCCACAGTTGGAGGTGGACCTGCTGAAAGCAGAGAATGACCGACTGAAGGTAGCCCC
....................................................(((...(((((((((((((.((......((.....))...))..))))))))))))).)))...............................................................................
..................................................51.............................................................114............................................................................
SizePerfect hitTotal NormPerfect NormSRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................GTGTCTGGGCGGACAGCTGC......................................................................................................................2019.009.003.00-3.00-----1.00-------------------------1.001.00--------
......................................................GTGTCTGGGCGGACAGCTGCA.....................................................................................................................2117.007.001.00-1.00---1.00-1.00------1.00--------1.00--1.00----------------
.......................................................TGTCTGGGCGGACAGCTGCAG....................................................................................................................2113.003.001.002.00------------------------------------------
....................................................................................................................................................GTGGACCTGCTGAAAGCAGA........................2012.002.00---2.00----------------------------------------
...............................................................................................................................................TGGAGGTGGACCTGCTGAAAGCAGAG.......................2612.002.00----1.00-1.00-------------------------------------
.......................................................TGTCTGGGCGGACAGCTGCA.....................................................................................................................2012.002.00--------------2.00-----------------------------
...........................................................................................GGCTTGCTGTCTGTCCAGTCTGC..............................................................................2312.002.00-----1.00----1.00---------------------------------
..................................................GTCAGTGTCTGGGCGGACAGC.........................................................................................................................2112.002.00---------2.00----------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCACCC.........................................................................2112.002.00-----------------------1.00-----1.00--------------
.....................................................AGTGTCTGGGCGGACAGCTGCAG....................................................................................................................2312.002.001.00----------1.00--------------------------------
....................................................................................................................................................GTGGACCTGCTGAAAGCAG.........................1912.002.00-------------2.00------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCACC..........................................................................2012.002.00------------------1.00-----------------1.00-------
......................................................................................................................................................................GAGAATGACCGACTGAAGG.......1911.001.00-------------------------------------1.00------
.......................................................TGTCTGGGCGGACAGCTGCAT....................................................................................................................2111.002.00-------1.00------------------------------------
.......................................................TGTCTGGGCGGACAGCTGC......................................................................................................................1911.001.00--1.00-----------------------------------------
..................................................................................................................CACCCTACCCTGTCTGTT............................................................1811.001.00--------------------1.00-----------------------
......................................................GTGTCTGGGCGGACAGC.........................................................................................................................1711.001.00-1.00------------------------------------------
......................................................GTGTCTGGGCGGACAGCTG.......................................................................................................................1911.001.00---------------1.00----------------------------
..............................................................................................................................................TTGGAGGTGGACCTGCTGAAAG............................2211.001.00---1.00----------------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCGTCC.........................................................................211.000.00-----1.00--------------------------------------
.......................................................................TGCAGGAAAGGGAAGACCAAG....................................................................................................2111.001.00--------------------------1.00-----------------
.................................................................................................CTGTCTGTCCAGTCTGCCC............................................................................191.000.00---------------------------------1.00----------
.....................................................AGTGTCTGGGCGGACAGCTGCAT....................................................................................................................2311.001.00-1.00------------------------------------------
.....................................................AGTGTCTGGGCGGACAGCTGCA.....................................................................................................................2211.001.00--------------------------------------1.00-----
...............................................................................................TGCTGTCTGTCCAGTCTGCCC............................................................................211.000.00-------1.00------------------------------------
............................................................................................GCTTGCTGTCTGTCCAGTCTGC..............................................................................2211.001.00-1.00------------------------------------------
.......................................................TGTCTGGGCGGACAGCTGCAGGAAA................................................................................................................2511.001.00---------------------1.00----------------------
......................................................GTGTCTGGGCGGACAGCAA.......................................................................................................................1911.001.00----------1.00---------------------------------
.......................................................TGTCTGGGCGGACAGCTGCAAA...................................................................................................................2211.002.00------------------------------1.00-------------
..................................................................................................TGTCTGTCCAGTCTGCCGT...........................................................................191.000.00-----1.00--------------------------------------
.....................................................AGTGTCTGGGCGGACAGCTGC......................................................................................................................2111.001.001.00-------------------------------------------
.....................................................AGTGTCTGGGCGGACAGCTGCAGGAAA................................................................................................................2711.001.00--1.00-----------------------------------------
......CCCACCAACTGGATCAGCTTCGG...................................................................................................................................................................2311.001.00----------------------------1.00---------------
..................................................................................................TGTCTGTCCAGTCTGCCATCC.........................................................................211.000.00---------------------------------------1.00----
.............................................................GGCGGACAGCTGCAGGAAAGGGAAGACCAAG....................................................................................................3111.001.00-----------------1.00--------------------------
...........................................................TGGGCGGACAGCTGCAGG...................................................................................................................1811.001.00----1.00---------------------------------------
..................................................................................................TGTCTGTCCAGTCTGCCACCCAA.......................................................................2311.002.00-------------------------1.00------------------
......................................................GTGTCTGGGCGGACAGCTGCAGGAAA................................................................................................................2611.001.00--1.00-----------------------------------------
.............ACTGGATCAGCTTCGGGAGACCAT...........................................................................................................................................................2411.001.00----------------1.00---------------------------
...........................................................................................GGCTTGCTGTCTGTCCAGTCTG...............................................................................2211.001.001.00-------------------------------------------
..................................................GTCAGTGTCTGGGCGGACAGA.........................................................................................................................211.000.00----1.00---------------------------------------
.......................................ACAACATGCAGGTCAGTGTCTGGGCGGACAGC.........................................................................................................................3211.001.00-1.00------------------------------------------
........................................................GTCTGGGCGGACAGCTG.......................................................................................................................1711.001.00-----------------------------------------1.00--
....................................................CAGTGTCTGGGCGGACAGCTGCAG....................................................................................................................2411.001.00-1.00------------------------------------------
....................................................CAGTGTCTGGGCGGACAGCTGCC.....................................................................................................................231.000.00-----------1.00--------------------------------
..........................................................CTGGGCGGACAGCTGCA.....................................................................................................................1720.500.50----------------0.50---------------------------
..................................................................................................................................................AGGTGGACCTGCTGAA..............................1660.170.17-------------------------------------------0.17
..................................................................................................................................................AGGTGGACCTGCTGAAGGAT..........................2060.170.17------------------------------------------0.17-

Antisense strand
ACTCTGCCCACCAACTGGATCAGCTTCGGGAGACCATGCACAACATGCAGGTCAGTGTCTGGGCGGACAGCTGCAGGAAAGGGAAGACCAAGGCTTGCTGTCTGTCCAGTCTGCCACCCTACCCTGTCTGTTCTTGCCACAGTTGGAGGTGGACCTGCTGAAAGCAGAGAATGACCGACTGAAGGTAGCCCC
....................................................(((...(((((((((((((.((......((.....))...))..))))))))))))).)))...............................................................................
..................................................51.............................................................114............................................................................
SizePerfect hitTotal NormPerfect NormSRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................AGAGAATGACCGACTGAT......... 181.000.00----------------------------------------1.00---
.........................................................................................................AGAACAGACAGGGTAGGGTGGCAGACTGG.......................................................... 2911.001.00------------1.00-------------------------------
....................................................................................................................................................GTGGACCTGCTGAAAATTG......................... 191.000.00-------------------------------1.00------------
.....................................................................................................................................TTGCCACAGTTGGAGCCA......................................... 181.000.00--------------------------------1.00-----------
.................GATCAGCTTCGGGAGAAG............................................................................................................................................................. 181.000.00----------------------1.00---------------------
......................................................................................................................................................TCGGTCATTCTCTGCTTTCAGCAGGTCC.............. 2811.001.00------------1.00-------------------------------
......................................................................CTGCAGGAAAGGGAATCAG....................................................................................................... 191.000.00-------------------1.00------------------------
..................................................................................................TGGCAGACTGGACAGACA............................................................................ 1820.500.50------0.50-------------------------------------
....................................................................TCCCTTTCCTGCAGCT............................................................................................................ 1660.170.17-----------------0.17--------------------------