ID: uc011lxl.59
GENE: COL27A1(59)
chr9:117072629-117072878+


(2)
B-CELL
(3)
BREAST
(12)
CELL-LINE
(9)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(7)
LIVER
(1)
OTHER
(1)
RRP40.ip
(9)
SKIN
(4)
UTERUS

Sense strand
AGTTACAGTGATGTTCATGACAGCATTCCTTACAAGAATAAAAAGAGTGGAAGCAATCTAAATGTGCCATATAGGTCATTGCTACAATGAAATACAGTATAGCCATTAAAAATTGTGAGGAAAGATGGAAGGGAAAATGCTCATGATGTATGATAAGAATCACGATGGATGTACGTGTGCACTTTTCCTTCTGCCTTCAGGTCCAAGATGGCCGCTGGCATCAGACACTCTTCACCTTCCGGACCCAAGA
.......................................................................................................................((.((..((((((((((.(((.((((((((.((((....))))......)))).)))).))).))))))))))..))))....................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040042(GSM532927)
G428N. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR038855(GSM458538)
D10. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR029126(GSM416755)
143B. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR040019(GSM532904)
G701T. (cervix)
SRR040017(GSM532902)
G645T. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
TAX577453(Rovira)
total RNA. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR189782SRR029128(GSM416757)
H520. (cell line)
SRR040023(GSM532908)
G575T. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................AAAGATGGAAGGGAAAATGCT.............................................................................................................21127.0027.009.003.002.002.00-1.00---1.001.002.002.00--------1.00---------1.00-1.00--1.00-------------
.........................................................................................................................AAGATGGAAGGGAAAATGCTCA...........................................................................................................2218.008.00----2.00-----1.00-----1.00---------1.00-1.00-----------1.00-1.00-------
.................................................................................................................................................................................TGCACTTTTCCTTCTGCCTTCA...................................................2218.008.001.00-----3.00------2.00------------------------1.00-------1.00---
........................................................................................................................AAAGATGGAAGGGAAAATGC..............................................................................................................2017.007.005.001.001.00-----------------------------------------------
.........................................................................................................................AAGATGGAAGGGAAAATGCT.............................................................................................................2017.007.002.00-1.00----1.00-1.00----1.00------------1.00----------------------
........................................................................................................................AAAGATGGAAGGGAAAATGCTC............................................................................................................2213.003.002.001.00------------------------------------------------
........................................................................................................................AAAGATGGAAGGGAAAATG...............................................................................................................1923.003.00-0.501.00----0.50------1.00-----------------------------------
.................................................................................................................................................................................TGCACTTTTCCTTCTGCCTTCAG..................................................2313.003.00--------1.00----------------------------1.00-----1.00------
........................................................................................................................AAAGATGGAAGGGAAAATGCTA............................................................................................................2213.0027.002.00--1.00----------------------------------------------
.........................................................................................................................AAGATGGAAGGGAAAATGCTCAA..........................................................................................................2312.008.00---2.00----------------------------------------------
.................................................................................................................................................................................TGCACTTTTCCTTCTGCCTTCAGT.................................................2412.003.00---------------2.00----------------------------------
........................................................................................................................AAAGATGGAAGGGAAAATGCTCATG.........................................................................................................2512.002.002.00-------------------------------------------------
..........................................................................................................................AGATGGAAGGGAAAATGCTCAT..........................................................................................................2212.002.002.00-------------------------------------------------
.................................................................................................................................................................................TGCACTTTTCCTTCTGCCTTC....................................................2121.501.50----------------0.50------------------------------0.500.50-
........................................................................................................................AAAGATGGAAGGGAAAATGCTCATT.........................................................................................................251.000.00----1.00---------------------------------------------
..........................................................................................................................AGATGGAAGGGAAAATGCTCA...........................................................................................................2111.001.00-------------------------1.00------------------------
....................................................................................................................................................................................ACTTTTCCTTCTGCCTTCAGT.................................................211.000.00-------------------1.00------------------------------
...............................................................................................................................................................................TGTGCACTTTTCCTTCTGCC.......................................................2011.001.001.00-------------------------------------------------
....................................................................................................................GAGGAAAGATGGAAGTCT....................................................................................................................181.000.00-----------------------1.00--------------------------
.........................................................................................................................AAGATGGAAGGGAAAATGC..............................................................................................................1911.001.00-----------------------------1.00--------------------
.............................................................................................................................TGGAAGGGAAAATGCTCATGATG......................................................................................................2311.001.00------------------------------1.00-------------------
.......................................................................................................................................................................................................................TGGCATCAGACACTCTTCA................1911.001.00-----1.00--------------------------------------------
...................................................................................................................................................................................................................CCGCTGGCATCAGACCGA.....................181.000.00----------------------------------1.00---------------
..............................................................................................................................................................ATCACGATGGATGTACGTGTGCACTTT.................................................................2711.001.00--------------------1.00-----------------------------
........................................................................................................................................................................ATGTACGTGTGCACTTTTCCTTCTGCCTTCAG..................................................3211.001.00--------1.00-----------------------------------------
......................................................................................................................GGAAAGATGGAAGGGATGGA................................................................................................................201.000.00----------------------1.00---------------------------
.....................................................................................................................AGGAAAGATGGAAGGGAT...................................................................................................................181.000.00-----------------------------------1.00--------------
........................................................................................................................AAAGATGGAAGGGAAGCT................................................................................................................181.000.00--------------------------------1.00-----------------
.........................................................................................................................AAGATGGAAGGGAAAATGCTC............................................................................................................2111.001.00-----------------------------------------1.00--------
.........................................................................................................................AAGATGGAAGGGAAAATGCTCAT..........................................................................................................2311.001.00-----1.00--------------------------------------------
.........................................................................................................................AAGATGGAAGGGAAAAAGCT.............................................................................................................201.000.001.00-------------------------------------------------
..........................................................................................................................AGATGGAAGGGAAAATGCTCATT.........................................................................................................2311.002.00-------1.00------------------------------------------
.........................................................................................................................AAGATGGAAGGGAAAATG...............................................................................................................1830.330.33--0.33-----------------------------------------------
..............................................................................................................................................................ATCACGATGGATGTA.............................................................................1530.330.33-----------------0.33--------------------------------

Antisense strand
AGTTACAGTGATGTTCATGACAGCATTCCTTACAAGAATAAAAAGAGTGGAAGCAATCTAAATGTGCCATATAGGTCATTGCTACAATGAAATACAGTATAGCCATTAAAAATTGTGAGGAAAGATGGAAGGGAAAATGCTCATGATGTATGATAAGAATCACGATGGATGTACGTGTGCACTTTTCCTTCTGCCTTCAGGTCCAAGATGGCCGCTGGCATCAGACACTCTTCACCTTCCGGACCCAAGA
.......................................................................................................................((.((..((((((((((.(((.((((((((.((((....))))......)))).)))).))).))))))))))..))))....................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040042(GSM532927)
G428N. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR038855(GSM458538)
D10. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191509(GSM715619)
156genomic small RNA (size selected RNA from . (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR029126(GSM416755)
143B. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR040019(GSM532904)
G701T. (cervix)
SRR040017(GSM532902)
G645T. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
TAX577453(Rovira)
total RNA. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR189782SRR029128(GSM416757)
H520. (cell line)
SRR040023(GSM532908)
G575T. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................................................................TTCCTTCTGCCTTCAGGC................................................ 181.000.00------------------------1.00-------------------------
.................................................................................................................................................................................................CCTTCAGGTCCAAGATGGT...................................... 191.000.00---------------------------------------1.00----------
.......................................AAAAAGAGTGGAAGCAAT................................................................................................................................................................................................. 181.000.00---------------------------------------------1.00----
.....................................................................................................................................................................................................................................CTTCACCTTCCGGACCGGTG. 201.000.00------------------1.00-------------------------------
..............................................................................................................................GGAAGGGAAAATGCTGGAG......................................................................................................... 191.000.00-----------------1.00--------------------------------
................................................................................................................................................................................................GCCTTCAGGTCCAAGGGT........................................ 181.000.00--------------------------------------------1.00-----
....................................AATAAAAAGAGTGGAA...................................................................................................................................................................................................... 1690.220.22-------------------------------------------------0.22