ID: uc010yel.9
GENE: KIAA0691(9)
chr19:54651683-54651932+


(1)
AGO1.ip 		(3)
AGO2.ip 		(2)
BRAIN 		(7)
BREAST 		(27)
CELL-LINE 		(1)
FIBROBLAST 		(6)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN

Sense strand
GTGTGAGTGTTTTAAGCATGAAGGTGATTGAAGCCATGAGGGTGAGTAAGGTCACCCAGGTCCCCAAGAGGGCAGGAGCAGGTGGGGGCAGCGAGGCCAGAGAGGAGGCTGCTGGGACAAAGATGGAGCCTGAGGTGGGGGTGGTGAGGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTCCCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCA
..............................................................................................................................................((((.((((((.(((..(((((...))).)).......))).)))))).)))).......................................................
.............................................................................................................................................142........................................................201...............................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037938(GSM510476)
293Red. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038860(GSM458543)
MM426. (cell line)		SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGA.................................................22133.0013.001.004.003.001.00--1.001.00-1.003.00----2.001.00-2.001.002.00-1.00---1.00----1.00--------1.00-1.00-1.00-1.00-1.00---1.00------1.00----
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGT.................................................22123.0023.002.002.00-2.001.00--1.00-----1.003.00-------1.00-----1.001.001.00----1.00-1.001.00------1.00---1.00-------1.001.00-----
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAG..................................................21113.0013.00---2.002.00------3.00---------2.00-----1.00-----------1.00---------------1.00----1.00---
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGC....................................................1917.007.001.00---1.00--1.00--------1.002.00--------------------------------------1.00-------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGC.................................................2215.0013.003.00-1.00---------1.00---------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCA...................................................2015.005.001.00-----1.001.00----1.00------------1.00--------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGTA................................................2314.0023.001.00--------1.00--1.001.00--------------------------------------------------
....................................................................................GGGGCAGCGAGGCCAGAGAGGAGGCTGCCGGG......................................................................................................................................322.000.00--------2.00-------------------------------------------------------
..................................................................................................AGAGAGGAGGCTGCTGGGACA...................................................................................................................................2112.002.00-----------------------2.00----------------------------------------
....................................................................................................................................................GGAGACCAGCTGGCCCACTGGGC...............................................................................232.000.00-----2.00----------------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCG.....................................................1811.001.00--------------------------------1.00-------------------------------
.....................................................................................................GAGGAGGCTGCTGGGACAAAGATGGAGCCTGAGGTGGGGGTGGTGAGGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTCCCACCCGCA...................................................9811.001.00-----------------------------------------------1.00----------------
.............................................................................................AGGCCAGAGAGGAGGCGGGT.........................................................................................................................................201.000.00-----1.00----------------------------------------------------------
.............................................................................................................................................TGGTGAGGGAGACCAGCTGGCAGAT....................................................................................251.000.00------------------------------------------------------1.00---------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGA....................................................1911.001.00------1.00---------------------------------------------------------
.......................GTGATTGAAGCCATGAGGGT...............................................................................................................................................................................................................2011.001.00------------------------1.00---------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCT...................................................2011.007.00-------------1.00--------------------------------------------------
..................TGAAGGTGATTGAAGCCATGAGGGCGAG............................................................................................................................................................................................................281.000.00-----1.00----------------------------------------------------------
.............................................................................................................................................TGGTGAGGGAGACCAGCTGGCGCA.....................................................................................241.000.00--------------------------------------------------1.00-------------
.................................................................................................................................................................................CCTCTGCTCTCTCCCACCCGCA...................................................2211.001.00------------------------------------1.00---------------------------
..................TGAAGGTGATTGAAGCCATGAGGGTG..............................................................................................................................................................................................................2611.001.00--------1.00-------------------------------------------------------
........................................................................................................................................................................................................................GCTCCAAGCCTGTCCACAGCAAC...........2311.001.00-----------------------------------------1.00----------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCTC....................................................1921.000.50---------1.00------------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGTT................................................2311.0023.00------1.00---------------------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGAA................................................2311.0013.00-------------------1.00--------------------------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGTTA...............................................2411.0023.00---------------------------------------------------1.00------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCCGCAGTC................................................2311.001.00--1.00-------------------------------------------------------------
......................................................................................................AGGAGGCTGCTGGGACAAAGACGG............................................................................................................................241.000.00--------1.00-------------------------------------------------------
.............................................................................................................................................TGGTGAGGGAGACCAGCTGGCCCA.....................................................................................2411.001.00----------------------------------1.00-----------------------------
...................................................................................................................................................................................TCTGCTCTCTCCCACCC......................................................1720.500.50----0.50-----------------------------------------------------------
.....................................................................................................................CAAAGATGGAGCCTGA.....................................................................................................................1640.500.50------------------------0.25-------------------------------------0.25-
....................................................................................................AGAGGAGGCTGCTGGGAAAAA.................................................................................................................................2170.140.14---------------------------------------------------------------0.14
....................................................................................................AGAGGAGGCTGCTGGGA.....................................................................................................................................1770.140.14-------------------------0.14--------------------------------------
........................................................................CAGGAGCAGGTGGGGGC.................................................................................................................................................................1780.120.12--------------------------0.12-------------------------------------

Antisense strand
GTGTGAGTGTTTTAAGCATGAAGGTGATTGAAGCCATGAGGGTGAGTAAGGTCACCCAGGTCCCCAAGAGGGCAGGAGCAGGTGGGGGCAGCGAGGCCAGAGAGGAGGCTGCTGGGACAAAGATGGAGCCTGAGGTGGGGGTGGTGAGGGAGACCAGCTGGCCCACTGGGTCCTGACCCTCTGCTCTCTCCCACCCGCAGTCTCCAGCCAAAAACGGCTCCAAGCCTGTCCACAGCAACCAGCACCCTCA
..............................................................................................................................................((((.((((((.(((..(((((...))).)).......))).)))))).)))).......................................................
.............................................................................................................................................142........................................................201...............................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037938(GSM510476)
293Red. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038860(GSM458543)
MM426. (cell line)		SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
.....................................................................................................................................................................................................................................CCACAGCAACCAGCACCCTCAT 221.000.00-----------------------------------------------------1.00----------
....................................................................................................................................................................................................................................TCCACAGCAACCAGCGATT... 191.000.00---------------------------------1.00------------------------------
................................................................................GGTGGGGGCAGCGAGGCC........................................................................................................................................................ 1811.001.00-------------------------------------------1.00--------------------
................................................AGGTCACCCAGGTCCC.......................................................................................................................................................................................... 1630.330.33---------0.33------------------------------------------------------
...............................................................................................................CTGGGACAAAGATGGA........................................................................................................................... 1640.250.25-------------------------------------------------------------0.25--