ID: uc010yel.7
GENE: KIAA0691(7)
chr19:54649504-54649695+


(2)
AGO2.ip
(5)
B-CELL
(3)
BRAIN
(11)
BREAST
(23)
CELL-LINE
(1)
CERVIX
(3)
HEART
(4)
HELA
(6)
LIVER
(1)
OTHER
(7)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CTTCGAGGAGAACGAGTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGATCGTGGCACAGGAAGTGAGGGCCCAGAATGGGCTGTGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCTCCCAGCCACAGCCACATGGAGGAT
..................................................................................(((.((((..((((.(((((((...((....))..))).))))))))...)))).)))....................................................
............................................................................77...............................................................142................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR189786SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR038856(GSM458539)
D11. (cell line)
SRR040042(GSM532927)
G428N. (cervix)
SRR038857(GSM458540)
D20. (cell line)
SRR191516(GSM715626)
66genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)
SRR191441(GSM715551)
106genomic small RNA (size selected RNA from . (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACAGT.................................................24117.006.00---1.00-1.00------1.002.00----1.002.00--1.00-----1.001.00-1.00-1.00-1.001.00-----------------1.001.00------------
.................................................................................AGTGAGGGCCCAGAATGGGCTGTGT......................................................................................25114.0014.005.00--4.00--4.00----1.00--------------------------------------------------------
..................................................GTGAGGCCCTGGGGCTGATCGTGGCACAGGAAGTGAGGGCCCAGAATGGGCTGTGTGAGCCAGCTAAGCATGCCCTTTT...............................................................799.000.00--9.00-----------------------------------------------------------------
..................................................GTGAGGCCCTGGGGCTGATCGTGGCACAGGAAGTGAGGGCCCAGAATGGGCTGTGTGAGCCAGCTAAGCATGCC....................................................................7418.008.00-8.00------------------------------------------------------------------
..................................................GTGAGGCCCTGGGGCTGATCGTGGCACAGGAAGTGAGGGCCCAGAATGGGCTGTGTGAGCCAGCTAAGC.........................................................................6917.007.00-6.001.00-----------------------------------------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACAG..................................................2316.006.002.00----1.00--1.00------1.00---------1.00------------------------------------------
................................................................................AAGTGAGGGCCCAGAATGGGCTGTGT......................................................................................2616.006.00----6.00---------------------------------------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACAGA.................................................2416.006.00-----2.00-----1.00------1.00--------------------------1.00-------1.00--------------
.................................................................................AGTGAGGGCCCAGAATGGGCTG.........................................................................................2215.005.005.00-------------------------------------------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACA...................................................2214.004.00------------1.00----1.00------1.00-----1.00-------------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACAGTT................................................2513.006.00---------2.00--------------------------------------1.00-------------------
........................................................................................................................TGCCCTTCTTCTGCCCCCACAGT.................................................233.000.00-----------------1.00---1.00------------1.00---------------------------------
................................TGGACCTCGAGGACATTC..............................................................................................................................................1822.502.50---------------------------------------------------------0.500.500.50--0.50-0.50---
........................CGATGACCTGGACCTCGAGGAC..................................................................................................................................................2212.002.00---------------1.00-------------------------------1.00--------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACAAT.................................................2412.004.00-------2.00------------------------------------------------------------
.................................................................................AGTGAGGGCCCAGAATGGG............................................................................................1911.001.00-----1.00--------------------------------------------------------------
......................TACGATGACCTGGACCTCGAG.....................................................................................................................................................2111.001.00--------------------1.00-----------------------------------------------
...................................................................................TGAGGGCCCAGAATGGGCTGTGT......................................................................................2311.001.00----------------------------------------------1.00---------------------
..........................ATGACCTGGACCTCGAGGAC..................................................................................................................................................2011.001.00---------------------------1.00----------------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCAC....................................................2111.001.00----------1.00---------------------------------------------------------
.......................ACGATGACCTGGACCTCGAGGACATT...............................................................................................................................................2611.001.00-----------------------------------------1.00--------------------------
................TTTCTCTACGATGACCTGGACCTCGAGGA...................................................................................................................................................2911.001.00----------------1.00---------------------------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCC.......................................................1811.001.001.00-------------------------------------------------------------------
......................TACGATGACCTGGACCTCGAGGACATTC..............................................................................................................................................2811.001.00-------------------------------------------1.00------------------------
.......................ACGATGACCTGGACCTCTAT.....................................................................................................................................................201.000.00-----------------------1.00--------------------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCATT...................................................2211.001.00---------------------------------------------------1.00----------------
.................................................................................AGTGAGGGCCCAGAATGGGC...........................................................................................2011.001.00--------------------------------1.00-----------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCATAGT.................................................2411.001.001.00-------------------------------------------------------------------
.............................................................GGGCTGATCGTGGCACAG.................................................................................................................1811.001.00--------------------------------------------------------1.00-----------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACCGT.................................................2411.001.00-------------------------------------------------1.00------------------
................................................................................AAGTGAGGGCCCAGAATG..............................................................................................1811.001.00--------------------------------------1.00-----------------------------
...................................................................................TGAGGGCCCAGAATGGGCTGTGA......................................................................................231.000.00-------1.00------------------------------------------------------------
..............................CCTGGACCTCGAGGACATTCCAC...........................................................................................................................................231.000.00----------------------------------------1.00---------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACAGG.................................................2411.006.00--------------------------1.00-----------------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACAGTAT...............................................2611.006.00--------------------------------------------1.00-----------------------
...........................................................................................................................................................CGCCACCTCCCCTCCCAAC..................191.000.00---------------------------------------1.00----------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCA.....................................................2011.001.00----------1.00---------------------------------------------------------
.................................................................................AGTGAGGGCCCAGAATGGGCTGTGTAACT..................................................................................2911.0014.00---1.00----------------------------------------------------------------
.................................................................................AGTGAGGGCCCAGAATGGGCTGTTA......................................................................................251.000.00----------------------------------------------------1.00---------------
...................CTCTACGATGACCTGGACCTCGAGGA...................................................................................................................................................2611.001.00-------------------------------------1.00------------------------------
.......................................................................................................................ATGCCCTTCTTCTGCCCCCACAGC.................................................2411.001.00---1.00----------------------------------------------------------------
...........................TGACCTGGACCTCGAGGACA.................................................................................................................................................2011.001.00--------1.00-----------------------------------------------------------
...........................................................................................CAGAATGGGCTGTGTGAG...................................................................................1820.500.50-----------------------------------------------------------------0.50--
............................................................................CAGGAAGTGAGGGCCCAG..................................................................................................1820.500.50--------0.50-----------------------------------------------------------
...........................................................................................CAGAATGGGCTGTGTGA....................................................................................1720.500.50---------------------0.50----------------------------------------------
.................................................................................AGTGAGGGCCCAGAATG..............................................................................................1720.500.50---------------------------------------------------------------0.50----
..........................................................................................CCAGAATGGGCTGTGTG.....................................................................................1730.330.33-------------------------------------------------------------0.33------
................................TGGACCTCGAGGACATT...............................................................................................................................................1760.170.17------------------------------------------------------------------0.17-
................................TGGACCTCGAGGACATTATGC...........................................................................................................................................2160.170.17-------------------------------------------------------------0.17------
................................TGGACCTCGAGGACA.................................................................................................................................................1590.110.11-------------------------------------------------------------------0.11

Antisense strand
CTTCGAGGAGAACGAGTTTCTCTACGATGACCTGGACCTCGAGGACATTCGTGAGGCCCTGGGGCTGATCGTGGCACAGGAAGTGAGGGCCCAGAATGGGCTGTGTGAGCCAGCTAAGCATGCCCTTCTTCTGCCCCCACAGCACAGGCGCTGGTCGCCACCTCCCCTCCCAGCCACAGCCACATGGAGGAT
..................................................................................(((.((((..((((.(((((((...((....))..))).))))))))...)))).)))....................................................
............................................................................77...............................................................142................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR189786SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR038856(GSM458539)
D11. (cell line)
SRR040042(GSM532927)
G428N. (cervix)
SRR038857(GSM458540)
D20. (cell line)
SRR191516(GSM715626)
66genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)
SRR191441(GSM715551)
106genomic small RNA (size selected RNA from . (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.........................................................................................................................................................................CCAGCCACAGCCACATAAGG... 202.000.00---2.00----------------------------------------------------------------
.....................................................................................................................................CCCCCACAGCACAGGCGAG........................................ 192.000.00--------------2.00-----------------------------------------------------
...................................................................................................................................................................CCCCTCCCAGCCACAGCCAC......... 2011.001.00------------------------------------------1.00-------------------------
.....................................................................................................................................CCCCCACAGCACAGGGGAG........................................ 191.000.00--------------------1.00-----------------------------------------------
.....................................................................................................................................CCCCCACAGCACAGGCGAGA....................................... 201.000.001.00-------------------------------------------------------------------
........................................................................................................................................................GGTCGCCACCTCCCCTCC...................... 181.000.00----------------1.00---------------------------------------------------
...........................................................................................................................................................CGCCACCTCCCCTCCGC.................... 171.000.00--------------------------------------------------1.00-----------------
........................................................................................................................................................................CCCAGCCACAGCCACATG...... 1820.500.50------------------------------------------------------------0.50-------