ID: uc010xqt.1
GENE: GATAD2A(1)
chr19:19602915-19603164+


(2)
AGO1.ip
(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(6)
BREAST
(19)
CELL-LINE
(2)
CERVIX
(2)
HEART
(3)
HELA
(1)
KIDNEY
(3)
OTHER
(1)
RRP40.ip
(12)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
CTGGGATTGGGTGCCCTATGACGTGTGGGTAAGAAGAAGGAGGCAGCCTGGGAGCCATGGGGCAGGGCAGGGGATGTGGAGGATGCAGGGCAGACAGGGAACAGACGGGGAGGTCTCAGCTCCCTGCCATGTGTCCACAGGGGTGGGCACTGGGTCCAGCTGTCAAGGGCGCTCTGGTCACTACTGTCTCCACCCCACAGTGACATGAAGTCCGAGAGGAGACCCCCCTCACCTGACGTGATTGTGCTCT
...........................................................................................................................................((((((((((.(((..((((.(((.....)))..))))...))).)))..)))))))......................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189784SRR553576(SRX182782)
source: Testis. (testes)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037935(GSM510473)
293cand3. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189786SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM532875(GSM532875)
G547N. (cervix)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
................................................................................................................................................................................GTCACTACTGTCTCCACCCCACAG..................................................24120.0020.00-15.004.00---1.00---------------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAG..................................................23115.0015.001.00-6.00-2.00---------2.00-------------1.00---------1.00--------1.00--1.00-------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACA...................................................22112.0012.005.00-1.00------------1.00-1.00-----------------1.00-1.00-1.00----1.00-------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTCC.............................................................................................21111.0011.0010.00----------------------1.00----------------------------------
..............................................................................................................................................................................TGGTCACTACTGTCTCCACCCCACT...................................................258.000.00---6.00---------2.00--------------------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTC..............................................................................................2015.005.003.00-----------------1.00-----------------------1.00---------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAGT.................................................2413.003.00--------1.00---------------1.00-----1.00---------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTCATAG..........................................................................................2413.005.003.00---------------------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCA.....................................................2012.002.00----1.00-----------------------------1.00-----------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGT...............................................................................................1912.002.00-------------------------1.00-----1.00--------------------------
...........................................................................................................................................................................................................................AGACCCCCCTCACCTGA..............1712.002.00------------2.00---------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAGA.................................................2412.0015.00--1.00--------------------------1.00----------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTCCG............................................................................................2212.0011.00----------2.00-----------------------------------------------
................................................................................................................................................................................GTCACTACTGTCTCCACCCCACA...................................................2312.002.00---------2.00------------------------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTCCATA..........................................................................................241.000.00--------1.00-------------------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAGC.................................................2411.0015.00--------------------1.00-------------------------------------
..............................................................................................................................................................................TGGTCACTACTGTCTCCACC........................................................2011.001.00-------1.00--------------------------------------------------
..........................................................................TGTGGAGGATGCAGGGCAGACAGGGAAC....................................................................................................................................................2811.001.00---------------------1.00------------------------------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAT..................................................2311.0012.00----1.00-----------------------------------------------------
....................................................................AGGGGATGTGGAGGATGCAGGGG...............................................................................................................................................................231.000.00-----------1.00----------------------------------------------
...................................................................................TGCAGGGCAGACAGGGAACAGACGGG.............................................................................................................................................2611.001.00-----1.00----------------------------------------------------
...................................................................................TGCAGGGCAGACAGGGAACAGACGG..............................................................................................................................................2511.001.00-----1.00----------------------------------------------------
..........................................................................................................................................AGGGGTGGGCACTGGGTCAAGT..........................................................................................221.000.00-------------------------------------------------1.00--------
...........................GGTAAGAAGAAGGAGGC..............................................................................................................................................................................................................1741.001.00---------------------------------------------------0.750.25-----
...................................................................................................................................................................................ACTACTGTCTCCACCCCACA...................................................2011.001.00------------------------------------------------1.00---------
.................................................................................................................................................................................................................GTCCGAGAGGAGACCCCCCTCACCTGACG............2911.001.00------1.00---------------------------------------------------
.............................................................................................................................................................................................CCACCCCACAGTGACGTCT..........................................191.000.00---------------------------------------------1.00------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACCA..................................................231.000.00-----------------------------------------1.00----------------
.................................................................................................................................................................................TCACTACTGTCTCCACCCCACAGAT................................................2511.0015.00--1.00-------------------------------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGGTAA.............................................................................................2111.002.00-------------------------------------------1.00--------------
................................................................................................................................................................................GTCACTACTGTCTCCACCCCACAT..................................................2411.002.00--1.00-------------------------------------------------------
....................................................................................................................................................................................................................CGAGAGGAGACCCCCCTCACCTGACGTG..........2811.001.00----------------1.00-----------------------------------------
...............CTATGACGTGTGGGTAAGAAGAAGGAGGC..............................................................................................................................................................................................................2911.001.00---------------------------1.00------------------------------
........................................................................................................................................ACAGGGGTGGGCACTGGA................................................................................................181.000.00-------------------1.00--------------------------------------
......................................................................................................................................................................................................................................ACCTGACGTGATTGTGCTC.1911.001.00----------------------------------------------1.00-----------
....................................................................AGGGGATGTGGAGGATGCAGGGC...............................................................................................................................................................2311.001.00-----------1.00----------------------------------------------
..........................................................................................................................................AGGGGTGGGCACTGGGTCCAGAA.........................................................................................231.000.00----------------------------------------1.00-----------------
..........................................................................................................................................AGGGGTGGGCACTGGGTCCA............................................................................................2011.001.00---------------------------------1.00------------------------
.....................................................................................................................................................................................................................................CACCTGACGTGATTGTGCTCT2111.001.00--------------------------------1.00-------------------------
................TATGACGTGTGGGTAAGAAGAAGGA.................................................................................................................................................................................................................2511.001.00-----1.00----------------------------------------------------
.........................................................TGGGGCAGGGCAGGGG.................................................................................................................................................................................1601.001.00---------------1.00------------------------------------------
..........................................................................................................................................AGGGGTGGGCACTGGGTCC.............................................................................................1911.001.001.00---------------------------------------------------------
.............................................................................................................................................................................................................TGAAGTCCGAGAGGAGA............................1711.001.00------------------------------------1.00---------------------
................................................................................................................................................................................GTCACTACTGTCTCCACCCCAC....................................................2211.001.00----------------------1.00-----------------------------------
..........................................................................................................................................AGGGGTGGGCACTGGGTCCAGC..........................................................................................2211.001.00-------1.00--------------------------------------------------
.................ATGACGTGTGGGTA...........................................................................................................................................................................................................................1440.250.25-----------------------------------------------------0.25----
..........................................................GGGGCAGGGCAGGGGAT...............................................................................................................................................................................1750.200.20------------------------------------------------------0.20---
...............................................................................................................................................................CTGTCAAGGGCGCT.............................................................................1450.200.20-------------------------------------------------------0.20--
.........................................................................................................................................................................................................................................TGACGTGATTGTGC...1490.110.11--------------------------------------------------------0.11-

Antisense strand
CTGGGATTGGGTGCCCTATGACGTGTGGGTAAGAAGAAGGAGGCAGCCTGGGAGCCATGGGGCAGGGCAGGGGATGTGGAGGATGCAGGGCAGACAGGGAACAGACGGGGAGGTCTCAGCTCCCTGCCATGTGTCCACAGGGGTGGGCACTGGGTCCAGCTGTCAAGGGCGCTCTGGTCACTACTGTCTCCACCCCACAGTGACATGAAGTCCGAGAGGAGACCCCCCTCACCTGACGTGATTGTGCTCT
...........................................................................................................................................((((((((((.(((..((((.(((.....)))..))))...))).)))..)))))))......................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189782SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR189784SRR553576(SRX182782)
source: Testis. (testes)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037935(GSM510473)
293cand3. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189786SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR191518(GSM715628)
83genomic small RNA (size selected RNA from t. (breast)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
GSM532875(GSM532875)
G547N. (cervix)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
...........................................................................GTGGAGGATGCAGGGCACA............................................................................................................................................................ 191.000.00--------------------------1.00-------------------------------
.......................................................................GGATGTGGAGGATGCAG.................................................................................................................................................................. 1790.110.11----------------0.11-----------------------------------------
..................................................................................................................................................................TCAAGGGCGCTCT........................................................................... 13100.100.10---------------------------------------------------------0.10