ID: uc010wsc.7
GENE: CASKIN2(7)
chr17:73500512-73500702-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(4)
HEART 		(4)
HELA 		(3)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGAGGGCACTAATGGCCATGGCCCTGGCCTCCTGATTGAGAACGCCCAGGTAGGATGATGGGGTCACGGACCAGGTCAGGGCTCACTCCCCACTGCCAGTTCCCCAAATGCTGAGTTGGCTCCTGCCCTGTCTCCTCCAGCCACTGCCCTCTGCTGGAGAGGACCAGGTGCTGCCAGGACTCCACCCGCC
....................................................((((.(((((((.((.(((((((.(((((((............))).............)))).)))).))))))))))))))))......................................................
..................................................51........................................................................................141................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189786SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR038861(GSM458544)
MM466. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577744(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR189784SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040008(GSM532893)
G727N. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTAGGATGATGGGGTCACGG.........................................................................................................................20117.0017.007.00--1.002.00-2.00---1.001.00---1.00-2.00---------------------------------
..................................................GTAGGATGATGGGGTCACG..........................................................................................................................19112.0012.004.006.00-1.00--------------------------------------1.00--------
..................................................GTAGGATGATGGGGTCACGGACCAGG...................................................................................................................26111.0011.00--7.00---1.001.00--------1.00---------------------1.00------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGGGCTCACTCCCCACTGCCAGTTCCCCAAATGCTGAGTTGGCTCCTGCCCTGTCTCCTCCAG..................................................91110.0010.00--------5.005.00-----------------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAG....................................................................................................................2519.009.00-1.004.002.00----------1.00--------1.00---------------------------
..................................................GTAGGATGATGGGGTCACGGACC......................................................................................................................2318.008.00--1.004.00----------1.001.00---1.00-------------------------------
..................................................GTAGGATGATGGGGTCACGGT........................................................................................................................2117.0017.007.00--------------------------------------------------
..................................................GTAGGATGATGGGGTCACGGAC.......................................................................................................................2217.007.00------1.001.00--2.001.00-1.00-------------------1.00-----------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGG..............................................................................................................3115.005.00-5.00-------------------------------------------------
..................................................GTAGGATGATGGGGTCACGGA........................................................................................................................2115.005.00------1.001.00---1.00-1.00-----------------1.00-------------------
..................................................GTAGGATGATGGGGTCACGGACCAGT...................................................................................................................2613.009.00----3.00----------------------------------------------
......................CCCTGGCCTCCTGATTGTATA....................................................................................................................................................213.000.00------------------------1.00---------1.00----------1.00-----
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAG...............................................................................................................3013.003.00-3.00-------------------------------------------------
.................................TGATTGAGAACGCCCAG.............................................................................................................................................1712.002.00------------------2.00--------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCA................................................................................................................2912.002.00-1.00---1.00---------------------------------------------
..............................................................................................................................................................AGAGGACCAGGTGCTGCCAGG............2112.002.00-----------------------------1.00-----1.00---------------
..................................................GTAGGATGATGGGGTC.............................................................................................................................1612.002.00----------------1.00-----------------------1.00----------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGGGCT...........................................................................................................3412.002.00-----2.00---------------------------------------------
...................................................TAGGATGATGGGGTCACGGACA......................................................................................................................221.000.00------1.00--------------------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGGGCTCACTCCCCACTGCCAGTTCCCCAAATGCTGAGTTGGCTCCTGCCCTGTCTCCTCCA...................................................9011.001.00--------------------1.00------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGT..................................................................................................................2711.001.00---1.00-----------------------------------------------
.......................................................................................................................................................................GGTGCTGCCAGGACTCCACC....2011.001.00-----1.00---------------------------------------------
..................................................GTAGGATGATGGGGTCACGGACA......................................................................................................................2311.007.00----1.00----------------------------------------------
.................................TGATTGAGAACGCCCAGC............................................................................................................................................1811.002.00----1.00----------------------------------------------
......................................................................................................................................................................AGGTGCTGCCAGGACTCC.......1811.001.00---------------------------------------1.00-----------
...................................................................................................................................................................ACCAGGTGCTGCCAGGACTCCACC....2411.001.00-----1.00---------------------------------------------
...................................................TAGGATGATGGGGTCACGGACCAG....................................................................................................................2411.001.00-----1.00---------------------------------------------
.............................CTCCTGATTGAGAACGCCCTG.............................................................................................................................................211.000.00-------------------------------------1.00-------------
.........................................................GATGGGGTCACGGACC......................................................................................................................1611.001.00----------------------------------------------1.00----
....................................................AGGATGATGGGGTCACGGACC......................................................................................................................2111.001.00----------------------------1.00----------------------
........................................................................................................................CTCCTGCCCTGTCTCCGCC....................................................191.000.00---------------------------1.00-----------------------
................................CTGATTGAGAACGCCCAGGTAGGATGATG..................................................................................................................................2911.001.00----1.00----------------------------------------------
..................................................GTAGGATGATGGGGTCACGGAAA......................................................................................................................2311.005.00--------------------------------------------1.00------
.......................CCTGGCCTCCTGATTGTAT.....................................................................................................................................................191.000.00-----------------------------------------1.00---------
................................CTGATTGAGAACGCCCA..............................................................................................................................................1711.001.00-------1.00-------------------------------------------
................................................................................................................................................................AGGACCAGGTGCTGCCGCTG...........201.000.00------------------------------1.00--------------------
........................................................................................................................................................TGCTGGAGAGGACCAGGGG....................191.000.00-------------------------------------------1.00-------
..................................................GTAGGATGATGGGGTCACGGAA.......................................................................................................................2211.005.00-------1.00-------------------------------------------
.........................................................................................................................................................GCTGGAGAGGACCAGGTGCTGCCAGGACTCCACC....3411.001.00-----1.00---------------------------------------------
.............................CTCCTGATTGAGAACGCCCAGGTAGGATG.....................................................................................................................................2911.001.00----------1.00----------------------------------------
..................................................GTAGGATGATGGGGTCACGGAAG......................................................................................................................2311.005.00---1.00-----------------------------------------------
..................................................GTAGGATGATGGGGTCACGGACCAGGTCAGGGC............................................................................................................3311.001.00-------------------------1.00-------------------------
..............................................................................................................................................................AGAGGACCAGGTGCTGCCATT............211.000.00------------------------------------1.00--------------
.........................................................................................................................................................GCTGGAGAGGACCAGGTGCT..................2011.001.00------------------------------------------------1.00--
.......................................................................................................................GCTCCTGCCCTGTCTCCTCC....................................................2011.001.00--------------------------1.00------------------------
....................................................AGGATGATGGGGTCACGGACCAGGTCAGA..............................................................................................................291.000.00-------1.00-------------------------------------------
...............................................CAGGTAGGATGATGGGGTCACG..........................................................................................................................2211.001.00-----------------------------------------------1.00---
........................................................................................................................CTCCTGCCCTGTCTCCTCCAT..................................................211.000.00--------------------------------1.00------------------
..................................................GTAGGATGATGGGGT..............................................................................................................................1540.250.25-------------------------------------------------0.25-

Antisense strand
CTGAGGGCACTAATGGCCATGGCCCTGGCCTCCTGATTGAGAACGCCCAGGTAGGATGATGGGGTCACGGACCAGGTCAGGGCTCACTCCCCACTGCCAGTTCCCCAAATGCTGAGTTGGCTCCTGCCCTGTCTCCTCCAGCCACTGCCCTCTGCTGGAGAGGACCAGGTGCTGCCAGGACTCCACCCGCC
....................................................((((.(((((((.((.(((((((.(((((((............))).............)))).)))).))))))))))))))))......................................................
..................................................51........................................................................................141................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189786SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR038861(GSM458544)
MM466. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577744(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR189784SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040008(GSM532893)
G727N. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................ACTGCCCTCTGCTGGAGAGAC........................... 211.000.00----------------------1.00----------------------------
.........................................................................AGGTCAGGGCTCACTCTG.................................................................................................... 181.000.00---------------------1.00-----------------------------
....................................................................................................................................CTCCTCCAGCCACTGCGATT....................................... 201.000.00------------1.00--------------------------------------
.................................................................................................................................TGTCTCCTCCAGCCACTGC........................................... 1911.001.00------------1.00--------------------------------------
.............................................CCCAGGTAGGATGATG.................................................................................................................................. 1650.200.20--------------------------------------------------0.20