ID: uc010vpb.44
GENE: FAM38A(44)
chr16:88804799-88805025-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(1)
BRAIN 		(11)
BREAST 		(39)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(7)
HELA 		(13)
LIVER 		(3)
OTHER 		(2)
RRP40.ip 		(16)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GCTGGTGGCGGCTGGGCGGGTCCTGGCCGTAACACTGCTTGCACTGGCAGGTACGCACCGAGGCAGGGGGCACTGGCAGTCACACTGGGAGGGGTCTTGGGAGTTCCCTGATGACTGTGGAGACAGCGGGACACATGGCACTGGCCAGGTACCACCCTGTGTGCCCCTGCCCCGCAGGCATCGCCCACCCCTCGGCCCTCTCCAGTGTCTACCTGCTGCTCTTCCTG
..................................................................................................................((((((...(((.((((((((.(((....))).((.....)).))))).))))))..))))))..................................................
..............................................................................................................111...............................................................177................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189784SRR038854(GSM458537)
MM653. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038857(GSM458540)
D20. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189786SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM339994(GSM339994)
hues6. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038861(GSM458544)
MM466. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189787SRR037943(GSM510481)
293DcrTN. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189785DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
...................................................................................................................TGTGGAGACAGCGGGACACATGG.........................................................................................23137.0037.007.005.001.00--4.002.00--1.00--2.001.001.00---1.00------1.00--1.00-1.00-------2.00-------1.00-------------1.00--------------------------------1.00-1.00-1.00--1.00-1.00-------
.....................................................................................................................TGGAGACAGCGGGACACATGGC........................................................................................22127.0027.001.007.00-----4.004.00----1.001.00-2.00--2.00------------------------------------------1.00--------------1.00----------1.00------------1.00---1.00----
.....................................................................................................................TGGAGACAGCGGGACACATGGCT.......................................................................................23115.0027.00-------2.001.00-----2.00-1.001.00-1.002.00------1.00--1.00---1.00--------------------------1.00------------------1.00-----------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATG..........................................................................................22113.0013.003.00-----1.00----------------1.00---1.001.00--2.00---------1.00-------------1.00----------------1.00----------------------------------1.00--
.....................................................................................................................TGGAGACAGCGGGACACATGGCA.......................................................................................23113.0013.00-------1.00---1.00-1.002.00-----1.001.00----1.001.00------1.00-----------------1.00--------------------1.00-----1.00------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGG.........................................................................................21113.0013.002.00-----2.00-------------1.001.00----------1.001.00---1.00-----------------------------------------------1.001.001.00--------1.00-------------
..........................................................................................................CCTGATGACTGTGGAGACAGCGGGACACATGGCACTGGCCAGGTACCACCCTGTGTGCCCCTGCCCCGCAG..................................................7119.009.00---9.00----------------------------------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACAT...........................................................................................2118.008.00--------1.00--2.00-----------1.00--------1.00-----------1.00-1.00------------------1.00--------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGCAT......................................................................................2418.0013.001.00-----------1.001.00---4.00---1.00----------------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGGCACTGGCCAGGTACCACCCTGTGTGCCCCTGCCCCGCAGT.................................................638.000.00--8.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGGC........................................................................................2418.008.001.004.00-------1.00----------------------------------1.00----------------------------------------------1.00------------------
...........................................................................................................CTGATGACTGTGGAGACAGCGGGACACATGGCACTGGCCAGGTACCACCCTGTGTGCCCCTGCCCCGCAG..................................................7018.008.00--4.004.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGT........................................................................................2216.0013.001.00----4.00-------------------------------------------------------------1.00------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATG..........................................................................................2016.006.00-----4.00------------------1.00--------------1.00----------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGGCT.......................................................................................2515.008.00-3.00------------------------1.00-------------------------------------------------------------------------------1.00---
...................................................................................................................TGTGGAGACAGCGGGACACATGGCA.......................................................................................2515.005.00--------3.00--1.00-----------------1.00--------------------------------------------------------------------------------
...........................................................................................................................CAGCGGGACACATGGCACTGGCCA................................................................................2415.005.00----4.00-------------------------------------------------------------1.00-------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGGT........................................................................................2415.0037.001.00-----------------------3.00-------------------------------------------------1.00-----------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGA.........................................................................................2114.006.00-2.00------------------1.00------------1.00----------------------------------------------------------------------------
..........................................................................................................CCTGATGACTGTGGAGACAGCGGGACACATGGCACTGGCCAGGTACCACCCTGTGTGCCCCTGC.........................................................6414.004.00--4.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACA............................................................................................2014.004.00-----------------------2.00----------------------------------------------------1.00------------1.00--------------------
...............................................................................................................TGACTGTGGAGACAGCGGGACACA............................................................................................2414.004.00---------2.00-1.00--------------------------------------------------------------------------------1.00-----------------
..........................................................................................................CCTGATGACTGTGGAGACAGCGGGACACATGGCACTGGCCAGGTACCACCCTGTGTGCCCCTGCCCCGC....................................................6914.004.00--4.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGGA........................................................................................2414.0037.00-3.00-----------------1.00------------------------------------------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACTGGC..................................................................................2113.003.00---------1.00---------------2.00------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGCTT......................................................................................2413.0027.00------------1.00---------------------1.00----------------------------------------1.00----------------------------------
...........................................................................................................................................................................................................AGTGTCTACCTGCTGCTCTTC...2113.003.00------------------3.00-------------------------------------------------------------------------------------------
..............................................................................................................ATGACTGTGGAGACAGCGGGACA..............................................................................................2313.003.003.00-------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGCAA......................................................................................2413.0013.001.00--------------------------------------1.00-----------------------------1.00----------------------------------------
.................................................................................................................ACTGTGGAGACAGCGGGACACA............................................................................................2212.002.00------1.00---------1.00---------------------------------------------------------------------------------------------
...............................................................................................................TGACTGTGGAGACAGCGGGACAC.............................................................................................2312.002.002.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGATGACTGTGGAGACAGC....................................................................................................2012.002.00------------------------------------1.00-------------------1.00-----------------------------------------------------
...............................................................................................................TGACTGTGGAGACAGCGGGACA..............................................................................................2212.002.00-----------------------------------2.00--------------------------------------------------------------------------
.............................................................................................................................................................TGTGTGCCCCTGCCCCGCAGA.................................................2112.001.00---------1.00------------------1.00---------------------------------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACTGGCCA................................................................................2312.002.00----1.00----------------------------------------------------1.00----------------------------------------------------
...............................................................................................................TGACTGTGGAGACAGCGGGA................................................................................................2012.002.00----------------------------------------2.00---------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGGCAT......................................................................................2612.005.00-----------------------------------------------2.00--------------------------------------------------------------
.............................................................................................................................................................TGTGTGCCCCTGCCCCGCAGT.................................................2112.001.00-1.00-------------------------------------------------------------------------------------------------1.00----------
.....................................................................................................................TGGAGACAGCGGGACACATGGCTAA.....................................................................................2512.0027.00------------------------------------------------------------------------------------1.00-----1.00-------------------
..............................................................................................................ATGACTGTGGAGACAGCGG..................................................................................................1912.002.002.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................GATGACTGTGGAGACAGCGGG.................................................................................................2112.002.00----2.00---------------------------------------------------------------------------------------------------------
...........................................................................................................CTGATGACTGTGGAGACAGCGGGACACATGGCACTGGCCAGGTACCACCCTGTGTGCCCCTGCC........................................................6412.002.00------------------------------------------------2.00-------------------------------------------------------------
................................................................................................................GACTGTGGAGACAGCGGGAC...............................................................................................2012.002.00----------------2.00---------------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGAA.......................................................................................2311.0013.00-------1.00------------------------------------------------------------------------------------------------------
...........................................................................................................................CAGCGGGACACATGGCACTGGC..................................................................................2211.001.00----1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGAA........................................................................................2211.006.00-----------------------------------------1.00--------------------------------------------------------------------
..................................................................................................................CTGTGGAGACAGCGGGACA..............................................................................................1911.001.00------------1.00-------------------------------------------------------------------------------------------------
...............................................................................................................TGACTGTGGAGACAGCGGGAC...............................................................................................2111.001.001.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCGCCCACCCCTCGGCCCTCTCCAG......................2511.001.00----------------------1.00---------------------------------------------------------------------------------------
....................................................................................................................GTGGAGACAGCGGGACACAT...........................................................................................2011.001.00-------------------1.00------------------------------------------------------------------------------------------
...............................................................................................................TGACTGTGGAGACAGCGGGACATT............................................................................................2411.002.001.00-------------------------------------------------------------------------------------------------------------
....................................................................................................GAGTTCCCTGATGACTGTGGAGACAGCGG..................................................................................................2911.001.00--------------------------------------------------------------------1.00-----------------------------------------
..........................CCGTAACACTGCTTGCACTGGC...................................................................................................................................................................................2211.001.00------------------1.00-------------------------------------------------------------------------------------------
...............................................................................................................TGACTGTGGAGACAGCGGGACACATGGCACT.....................................................................................3111.001.00------------------------------------------1.00-------------------------------------------------------------------
..............................................................................................................ATGACTGTGGAGACAGCGGGAC...............................................................................................2211.001.00--------------------------------1.00-----------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACAT...........................................................................................1911.001.00-------------------------------1.00------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGT.........................................................................................2311.0013.00---------------------------------------------1.00----------------------------------------------------------------
.............................................................................................................GATGACTGTGGAGACAGCGGGACACATGG.........................................................................................2911.001.00------------------------------------------1.00-------------------------------------------------------------------
............................................................AGGCAGGGGGCACTGTTCC....................................................................................................................................................191.000.00-----------------------------------------------------------1.00--------------------------------------------------
............................................................AGGCAGGGGGCACTGAAG.....................................................................................................................................................181.000.00------------------------------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................CCTGTGTGCCCCTGCCCCGCAG..................................................2211.001.001.00-------------------------------------------------------------------------------------------------------------
.......................................................................................................TTCCCTGATGACTGTGGAGACAGCGGGACA..............................................................................................3011.001.00------------1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................CAGCGGGACACATGGCACTGGCCAG...............................................................................2511.001.00-----------------------------1.00--------------------------------------------------------------------------------
.............................................................................................................................................................TGTGTGCCCCTGCCCCGCAG..................................................2011.001.00-----------------------------------------------------1.00--------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACTGGCCAG...............................................................................2411.001.00-1.00------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGGAA......................................................................................2411.0013.00------------1.00-------------------------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGA.........................................................................................2311.0013.00-------------1.00------------------------------------------------------------------------------------------------
.........................................................CCGAGGCAGGGGGCAGGAG.......................................................................................................................................................191.000.00----------------------1.00---------------------------------------------------------------------------------------
..................................................................................................................CTGTGGAGACAGCGGGACACATGG.........................................................................................2411.001.00------------1.00-------------------------------------------------------------------------------------------------
.................................................................................................................ACTGTGGAGACAGCGGGACACTA...........................................................................................231.000.00--------------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................................TGTGCCCCTGCCCCGCAGAAAT..............................................221.000.00--------------------------------------------------1.00-----------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACACGGC........................................................................................2411.004.00--------------------------------------------------------------------------------------------------1.00-----------
..........................................................................................................................ACAGCGGGACACATGGCACT.....................................................................................2011.001.00----1.00---------------------------------------------------------------------------------------------------------
......................................................................................................GTTCCCTGATGACTGTA............................................................................................................171.000.00---------------------------------------------------------------------------------1.00----------------------------
...............................................................................................................................................................TGTGCCCCTGCCCCGCAGTTTT..............................................221.000.00-----------------------------------------------------------------------1.00--------------------------------------
.................................................................................................TGGGAGTTCCCTGATGACTGTGGAGA........................................................................................................2611.001.00-------------------------------------------------1.00------------------------------------------------------------
....................................................................................................................GTGGAGACAGCGGGACACATGGC........................................................................................2311.001.00-------------------------------------1.00------------------------------------------------------------------------
..........................................................................................................CCTGATGACTGTGGAGACAGC....................................................................................................2111.001.00---------------------------------------------------1.00----------------------------------------------------------
..........................................................................................................................ACAGCGGGACACATGGCACTGGCCAG...............................................................................2611.001.00----1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACAAATG..........................................................................................201.000.00---------------------1.00----------------------------------------------------------------------------------------
.................................ACTGCTTGCACTGGCAG.................................................................................................................................................................................1711.001.00----------------------------------------------------------------------1.00---------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACAAGG.........................................................................................211.000.00----------------------------------------------------------------------------------------------1.00---------------
................................................................................................................GACTGTGGAGACAGCGGGACACAA...........................................................................................241.000.00---------1.00----------------------------------------------------------------------------------------------------
............................................................................................................TGATGACTGTGGAGACAGCGGGA................................................................................................2311.001.00-----------1.00--------------------------------------------------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACTGGCCAT...............................................................................2411.002.00------1.00-------------------------------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGGCAA......................................................................................2611.005.001.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................ACTGTGGAGACAGCGGGACA..............................................................................................2011.001.00-------------------------------------------1.00------------------------------------------------------------------
.................................................................................................................ACTGTGGAGACAGCGGGACACAAGA.........................................................................................2511.002.00------------------1.00-------------------------------------------------------------------------------------------
..................................................GTACGCACCGAGGCAGGGGGCACTGGCAGT...................................................................................................................................................3011.001.00------------------------------------1.00-------------------------------------------------------------------------
.............................................................................................................GATGACTGTGGAGACAGCGGGACACAT...........................................................................................2711.001.00----1.00---------------------------------------------------------------------------------------------------------
............................................................AGGCAGGGGGCACTGGAG.....................................................................................................................................................181.000.00-------------------------------------------------------------------------------------------------------1.00------
...................................................................................................................TGTGGAGACAGCGGGACACATGGGTA......................................................................................2611.0037.00-----------------------------1.00--------------------------------------------------------------------------------
.............................................................................................................................GCGGGACACATGGCACTGGC..................................................................................2011.001.00------1.00-------------------------------------------------------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACTGGCCAA...............................................................................2411.002.00------------------------------------------------------------------------------1.00-------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGTA........................................................................................2211.006.001.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................TGTGGAGACAGCGGGACACATGGCC.......................................................................................2511.008.00------------------------------------------------------1.00-------------------------------------------------------
..............................................................................................................ATGACTGTGGAGACAGCGGGATA..............................................................................................231.000.00----------------------------------------------------------------1.00---------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGA........................................................................................2211.0013.00---------------------------------1.00----------------------------------------------------------------------------
.......................................................................................................TTCCCTGATGACTGTGGAGACAGC....................................................................................................2411.001.001.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................ATGACTGTGGAGACAGCGGGACT..............................................................................................2311.001.00-----------------------------------1.00--------------------------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACTGGCCAGG..............................................................................2511.001.00-------1.00------------------------------------------------------------------------------------------------------
.CTGGTGGCGGCTGGGCGGGGCAA...........................................................................................................................................................................................................231.000.00---------------------------------------------------------------1.00----------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGCAGA.....................................................................................2511.0013.00-----------1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................CAGCGGGACACATGGCACTA....................................................................................201.000.00----------------------------------------------------------------------------------1.00---------------------------
...............................................................................................................TGACTGTGGAGACAGCGGGACACAT...........................................................................................2511.001.00-----------1.00--------------------------------------------------------------------------------------------------
......................................................................................................................GGAGACAGCGGGACACATGG.........................................................................................2011.001.00---------------------------------------------1.00----------------------------------------------------------------
.......................................................................................................................................................................................CCCACCCCTCGGCCCTCTCCAGCG....................241.000.00----------------------1.00---------------------------------------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACCGCC..................................................................................211.000.00----1.00---------------------------------------------------------------------------------------------------------
..............................................................................................................................CGGGACACATGGCACTGGACA................................................................................211.000.00------1.00-------------------------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACATGGCTA......................................................................................2411.0027.00-------------1.00------------------------------------------------------------------------------------------------
................................................................................................................GACTGTGGAGACAGCGGGACACATGGCACT.....................................................................................3011.001.00---------------1.00----------------------------------------------------------------------------------------------
....................................................................................................................GTGGAGACAGCGGGACACATG..........................................................................................2111.001.00-----------------1.00--------------------------------------------------------------------------------------------
.....................................................................................................................TGGAGACAGCGGGACACACGG.........................................................................................211.000.00---------1.00----------------------------------------------------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACTGGTTA................................................................................231.000.00-------------------------------------------1.00------------------------------------------------------------------
....................................................ACGCACCGAGGCAGGGGGCACTGGCAGTCACAC..............................................................................................................................................3311.001.00----------------------1.00---------------------------------------------------------------------------------------
.........................................................................................................CCCTGATGACTGTGGAGACAGCGGG.................................................................................................2511.001.00-------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................AGCGGGACACATGGCACTGGCA.................................................................................2211.003.00------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................CAGCGGGACACATGG.........................................................................................1540.750.75-0.75------------------------------------------------------------------------------------------------------------
.......................................................................ACTGGCAGTCACACTG............................................................................................................................................1620.500.50------------------------------------------------------------------------------------------------------------0.50-
...............................................................................................................TGACTGTGGAGACAGC....................................................................................................1630.330.33-------------------------------------------------------------------------------------------------------------0.33
.............................................................................................................................GCGGGACACATGGC........................................................................................1450.200.20-------------------------------------------------0.20------------------------------------------------------------
.....TGGCGGCTGGGCGGG...............................................................................................................................................................................................................1580.120.12-------------------------0.12------------------------------------------------------------------------------------

Antisense strand
GCTGGTGGCGGCTGGGCGGGTCCTGGCCGTAACACTGCTTGCACTGGCAGGTACGCACCGAGGCAGGGGGCACTGGCAGTCACACTGGGAGGGGTCTTGGGAGTTCCCTGATGACTGTGGAGACAGCGGGACACATGGCACTGGCCAGGTACCACCCTGTGTGCCCCTGCCCCGCAGGCATCGCCCACCCCTCGGCCCTCTCCAGTGTCTACCTGCTGCTCTTCCTG
..................................................................................................................((((((...(((.((((((((.(((....))).((.....)).))))).))))))..))))))..................................................
..............................................................................................................111...............................................................177................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189782SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189784SRR038854(GSM458537)
MM653. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038857(GSM458540)
D20. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189786SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		GSM339994(GSM339994)
hues6. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038861(GSM458544)
MM466. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189787SRR037943(GSM510481)
293DcrTN. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189785DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
.............................................................................................................................................................................................................TGTCTACCTGCTGCTCTTG... 196.000.00----------3.00----3.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GTCTACCTGCTGCTCGGTG.. 191.000.00----------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TGTCTACCTGCTGCTCTGA... 191.000.00----------1.00---------------------------------------------------------------------------------------------------
.....................................................................GCACTGGCAGTCACACTG............................................................................................................................................ 1811.001.00-----------------------------------------------------------------------------------1.00--------------------------
............................................................................................................................................................................................................GTGTCTACCTGCTGCTCGG.... 191.000.00----------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................GCCAGGTACCACCCTACA.................................................................. 181.000.00--------------------------------------------------------------------------------------------------------1.00-----
..............................................................................................................................................................................................................GTCTACCTGCTGCTCGTTG.. 191.000.00---------------1.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TGTCTACCTGCTGCTCGTG... 191.000.00----------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TGTCTACCTGCTGCTCTAG... 191.000.00----------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TGTCTACCTGCTGCTCTGG... 191.000.00---------------1.00----------------------------------------------------------------------------------------------