| (1) AGO1.ip OTHER.mut | (1) B-CELL | (8) BREAST | (15) CELL-LINE | (1) CERVIX | (2) LIVER | (2) OTHER | (1) RRP40.ip | (2) SKIN | (1) XRN.ip |
| CTTATTTTCCATTCTGAAACATAGTTAGTGGATTTATATCAAAGGATTTCAAATAGAAGAACATCATGATGAGAATAATTTTAGGATTTATATACTCTACTTTAGGGGGTGGAGAGTTCTTTTTACCTAGGCTTAGGGAATAGAAAGTGGTGTAGAGAATATAACTTCAATTACTTCTTTCATCATTTTTCTTCCTTTAGTCCACAAGCCCTAGCCATGCCGTGGTAGCCAATGTTCAGCTTGTCTTGCA ...................................................................................................................................((.((((((..((((((((((.((((((...............)))))))))))))))).)))))).)).................................................. ................................................................................................................................129....................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | TAX577588(Rovira) total RNA. (breast) | SRR015447(SRR015447) nuclear small RNAs. (breast) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | TAX577743(Rovira) total RNA. (breast) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039611(GSM531974) Human Normal Liver Tissue Sample 1. (liver) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR039193(GSM494812) HL60 cell line is derived from acute promyelo. (cell line) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189784 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577742(Rovira) total RNA. (breast) | SRR040018(GSM532903) G701N. (cervix) | SRR038863(GSM458546) MM603. (cell line) | SRR060985(GSM569189) Human naive B cell [09-001]. (cell line) | TAX577580(Rovira) total RNA. (breast) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR060982(GSM569186) Human centrocyte [09-001]. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | TAX577738(Rovira) total RNA. (breast) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................TAGGGAATAGAAAGTGGTGTAG............................................................................................... | 22 | 1 | 15.00 | 15.00 | 15.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TAGGGAATAGAAAGTGGTGTAGA.............................................................................................. | 23 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................TTCTTTCATCATTTTTTAG......................................................... | 19 | 2.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................CTTTCATCATTTTTCTTCCTTTAG.................................................. | 24 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................AGGGAATAGAAAGTGGTGTAGAGAA........................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAGAAGAACATCATGGCTT.................................................................................................................................................................................. | 19 | 2.00 | 0.00 | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TTCTTTCATCATTTTCAAG......................................................... | 19 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TAGAAGAACATCATGTTT................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................CTTCCTTTAGTCCACAAGCCCTAGC................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TAGAAAGTGGTGTAGAGAATAT........................................................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................................................................................TTAGGGGGTGGAGAGTAG................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TAGAAGAACATCATGATGA.................................................................................................................................................................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................AATGTTCAGCTTGTCTTGC. | 19 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | 0.50 |
| ......................................................................................................................................AGGGAATAGAAAGTGGTGTAGAGA............................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................TAGAAGAACATCATGGGTT.................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TTCTTTCATCATTTTTCTTCCTTTAG.................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................TAGAAGAACATCATGATTTA................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ......................................................................................................................................................................................TCATTTTTCTTCCTTGTTA................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TCATCATTTTTCTTCCCTGT................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTCATCATTTTTCTTCCTTTAG.................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................AGGGAATAGAAAGTGGTGTAGAG............................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................................................................................................TTAGGGGGTGGAGAGTTGGG................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TAGAAGAACATCATGTCAC.................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTCATCATTTTTCTTCCTTTAGT................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAGAAGAACATCATGGTAA.................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................TTAGGGAATAGAAAGTATTG.................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................AGGGGGTGGAGAGTTCTTTACC............................................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..................................................................................................................................GCTTAGGGAATAGAAAGTGGTGTA................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................TAGAAGAACATCATGATT................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| CTTATTTTCCATTCTGAAACATAGTTAGTGGATTTATATCAAAGGATTTCAAATAGAAGAACATCATGATGAGAATAATTTTAGGATTTATATACTCTACTTTAGGGGGTGGAGAGTTCTTTTTACCTAGGCTTAGGGAATAGAAAGTGGTGTAGAGAATATAACTTCAATTACTTCTTTCATCATTTTTCTTCCTTTAGTCCACAAGCCCTAGCCATGCCGTGGTAGCCAATGTTCAGCTTGTCTTGCA ...................................................................................................................................((.((((((..((((((((((.((((((...............)))))))))))))))).)))))).)).................................................. ................................................................................................................................129....................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | TAX577588(Rovira) total RNA. (breast) | SRR015447(SRR015447) nuclear small RNAs. (breast) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | TAX577743(Rovira) total RNA. (breast) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039611(GSM531974) Human Normal Liver Tissue Sample 1. (liver) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR039193(GSM494812) HL60 cell line is derived from acute promyelo. (cell line) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189784 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577742(Rovira) total RNA. (breast) | SRR040018(GSM532903) G701N. (cervix) | SRR038863(GSM458546) MM603. (cell line) | SRR060985(GSM569189) Human naive B cell [09-001]. (cell line) | TAX577580(Rovira) total RNA. (breast) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR060982(GSM569186) Human centrocyte [09-001]. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | TAX577738(Rovira) total RNA. (breast) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................TATAACTTCAATTACTT.......................................................................... | 17 | 3 | 4.00 | 4.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................AGTGGTGTAGAGAATATAA...................................................................................... | 19 | 1 | 3.00 | 3.00 | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................CTTAGGGAATAGAAAGTGGTGTAGAGAATATAA...................................................................................... | 33 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................AGTGGTGTAGAGAATATAACTTCAATTA............................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TTCATCATTTTTCTTCCTT..................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |