ID: uc010rea.1
GENE: RCN1(1)
chr11:32119696-32119945+


(3)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(16)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(1)
HELA 		(2)
LIVER 		(6)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCATGAGGCCTAGATTATGGGGTGGCTTGAAGGGACTGATATTAGAGGCATTCTGACATAGAATGTTTTAAAGAACTCAGTAGGTCGGGACCTTTTTTCCCTATATGTACCATTTGAGCATGCAGGATGAGTGATCTGGCAGGAAACGCCTTTCTTGACCGCACGGTTTAAAAACATTTCTGCATACATACATCCTGCAGGAAACCCCGCAGAGTTTCATGATTCTTCAGATCATCACACCTTTAAAAAG
........................................................................................................................(((((((((.(((.....(((((((...........((((....))))........)))))))...))).)))))))))...................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR343335SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189787SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR038856(GSM458539)
D11. (cell line)		SRR343334SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR189785SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM416733(GSM416733)
HEK293. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR037931(GSM510469)
293GFP. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.................................................................TTTTAAAGAACTCAGTAGGTCGG..................................................................................................................................................................2315.005.005.00----------------------------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGA...........................................................................................................2315.001.00-5.00---------------------------------------------
.....................................................................................................................................................................................GCATACATACATCCTGCAGTT................................................214.000.00----4.00------------------------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGGAT.........................................................................................................2514.002.00---4.00-------------------------------------------
....................................................................................................................................................................................TGCATACATACATCCTGCAG..................................................2013.003.002.00--------------------------1.00-------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGGAA.........................................................................................................2513.003.00-------3.00---------------------------------------
..................................................................................................................................................................................................................AGAGTTTCATGATTCTTCAGATCA................2422.502.50--------2.50--------------------------------------
..................................................................................................................................................................................TCTGCATACATACATCCTGCAGT.................................................232.000.00----------2.00------------------------------------
......................................................................................................................................................................................................................................ATCATCACACCTTTAAAAAG2022.002.00--1.50----------0.50---------------------------------
....................................................................................................................................................................................TGCATACATACATCCTGCAGTT................................................2212.003.00------------------------------1.00--1.00-------------
................................................................GTTTTAAAGAACTCATATG.......................................................................................................................................................................192.000.00--2.00--------------------------------------------
........................................................................................................ATGTACCATTTGAGCATGCAGG............................................................................................................................2212.002.002.00----------------------------------------------
...........................................................................................................................................................................AAACATTTCTGCATACATACATCCT......................................................2512.002.00-----------2.00-----------------------------------
.......................................................................................................................ATGCAGGATGAGTGATCTGGCAGG...........................................................................................................2412.002.001.00-------------------1.00--------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGGA..........................................................................................................2412.002.00---------1.00----1.00--------------------------------
..................................................................................................................................................................................TCTGCATACATACATCCTG.....................................................1911.001.00-------------1.00---------------------------------
..................................................................................................................................................................................TCTGCATACATACATCCTGCAGA.................................................231.000.00------------------------1.00----------------------
....................................................................................................................................................................................TGCATACATACATCCTGCAGT.................................................2111.003.00---------------------1.00-------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCATGA..........................................................................................................241.000.00----------------1.00------------------------------
..............................AGGGACTGATATTAGAGGCATT......................................................................................................................................................................................................2211.001.00-----------------------------------1.00-----------
.......................................................................................................................ATGCAGGATGAGTGATCTGGCAG............................................................................................................2311.001.00-----------------1.00-----------------------------
....................................................................................................................................................................................TGCATACATACATCCTGCA...................................................1911.001.00----------------------------1.00------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGGT..........................................................................................................2411.001.00------------1.00----------------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGG...........................................................................................................2311.001.00---------1.00-------------------------------------
....................................................................................................................................................................................TGCATACATACATCCTGCAGTTT...............................................2311.003.00--------------------------------1.00--------------
.................................................ATTCTGACATAGAATGTTT......................................................................................................................................................................................1921.001.00-----------------------------------------0.50-0.50---
........................................................................................................................TGCAGGATGAGTGATCTGGCAG............................................................................................................2211.001.00------------------1.00----------------------------
..................................................................................................................................................................................TCTGCATACATACATCCTGC....................................................2011.001.00-----------------------------1.00-----------------
.....................................................................................................................GCATGCAGGATGAGTGATCTGG...............................................................................................................2211.001.00----------------------1.00------------------------
.......................................................................................................................ATGCAGGATGAGTGATCTGGCA.............................................................................................................2211.001.00----------------------------------1.00------------
....................................................................................................................................................................................TGCATACATACATCCTG.....................................................1711.001.00-------------------1.00---------------------------
......................................................................................................................CATGCAGGATGAGTGATCTGGCA.............................................................................................................2311.001.00-------------------------1.00---------------------
.....................................................................................................................................................................................................................GTTTCATGATTCTTCAG....................1730.670.67-------------------------------------0.67---------
...........................................................................................................................................................................................................................TGATTCTTCAGATCATCACACCTTTAAA...2820.500.50----------------------------------------0.50------
..............................................................................................................................................................................................................................TTCTTCAGATCATCACACCT........2020.500.50------------------------------------------0.50----
..........................................................................................................................................................................................................................ATGATTCTTCAGATCATCACAC..........2220.500.50--------------------------------------0.50--------
..............................................................................AGTAGGTCGGGAC...............................................................................................................................................................1360.170.17--------------------------------------------0.17--

Antisense strand
CCATGAGGCCTAGATTATGGGGTGGCTTGAAGGGACTGATATTAGAGGCATTCTGACATAGAATGTTTTAAAGAACTCAGTAGGTCGGGACCTTTTTTCCCTATATGTACCATTTGAGCATGCAGGATGAGTGATCTGGCAGGAAACGCCTTTCTTGACCGCACGGTTTAAAAACATTTCTGCATACATACATCCTGCAGGAAACCCCGCAGAGTTTCATGATTCTTCAGATCATCACACCTTTAAAAAG
........................................................................................................................(((((((((.(((.....(((((((...........((((....))))........)))))))...))).)))))))))...................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR343335SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189787SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR038856(GSM458539)
D11. (cell line)		SRR343334SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR189785SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM416733(GSM416733)
HEK293. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR037931(GSM510469)
293GFP. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
..............................................GGCATTCTGACATAGC............................................................................................................................................................................................ 164.000.00-----4.00-----------------------------------------
.......................................................ACATAGAATGTTTTAAAG................................................................................................................................................................................. 182.000.00------2.00----------------------------------------
.....................................................................................................................GCATGCAGGATGAGTCAAG.................................................................................................................. 192.000.00--1.00--------------------1.00-----------------------
.......................................................ACATAGAATGTTTTAAG.................................................................................................................................................................................. 172.000.00------1.00--------1.00-------------------------------
............................................................................................................................................................................................TACATCCTGCAGGAAAAA............................................ 181.000.00-------------------------------1.00---------------
.............................................................................................................................................................................................................................ATTCTTCAGATCATCACA........... 1820.500.50------------------------------------0.50----------
..............................................................................................................................................................................................................CCGCAGAGTTTCATGATTCTTCAGA................... 2520.500.50--------------------------0.50--------------------
......................................................................................................................................................................................................AGGAAACCCCGCAGAGTTTCATGATTCTTCAG.................... 3220.500.50------------0.50----------------------------------
........................................................................................................................................................................................................GAAACCCCGCAGAGTTTCATGATTCTTCAGA................... 3120.500.50--------------------------0.50--------------------
...............................................................................................................................................................................................................CGCAGAGTTTCATGATTCTTC...................... 2120.500.50---------------------------------------0.50-------
...............................................................................................................................................................................................................................TCTTCAGATCATCACACC......... 1820.500.50------------------------------------0.50----------
...................................................................................................................................................GCCTTTCTTGACCG......................................................................................... 1490.220.22---------------------------------------------0.110.11