ID: uc010mih.14
GENE: C9orf93(14)
chr9:15729408-15729657+


(2)
AGO2.ip
(5)
B-CELL
(7)
BRAIN
(4)
BREAST
(10)
CELL-LINE
(5)
CERVIX
(1)
HEART
(2)
HELA
(1)
OTHER
(9)
SKIN

Sense strand
CACAATTTTCTGCTAACGTGTGGCAGTTTACACTGCTATTTTCTTTTTTTAAATTTCTTTATTTACATTTTATGTTAAAATTTTTATATGATCTTAAGGAATAAAATATAGTAGGACATTTTGGGTATTTTATTGGGGGAGATGACACAAAGAAATAGCTTGTGAGCATATTTCCTTCTCTGTTGCATCTCCCCGTATAGATAAGGCATCTAGAGTATATCTGTAAAAACAAGTCTGACACGATGAGAGA
.......................................................................................................................................(((((((((..(((..(((((((((....))).))))))......)))..)))))))))........................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR189784GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532886(GSM532886)
G850T. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR040006(GSM532891)
G601N. (cervix)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
.....................................ATTTTCTTTTTTTAACTCG..................................................................................................................................................................................................1916.000.007.00-6.002.00-1.00------------------------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGTAT....................................................22113.0013.00-2.00----2.00----2.00------------1.00----1.00---1.00--1.00--1.00-1.00---1.00--
.....................................................................................................................................TGGGGGAGATGACACAAAGA.................................................................................................2016.006.00--------------1.00---1.00-------------1.00----1.001.00----1.00----
.....................................................................................................................................TGGGGGAGATGACACAAAGAAA...............................................................................................2215.005.00-4.00---------------------1.00------------------------
....................................................................................................................................................................................................ATAGATAAGGCATCTGAC....................................182.000.00-------1.00--------------------1.00-------------------
...............................................................................................................................................................................TTCTCTGTTGCATCTCCCCGTAT....................................................2312.002.00----------------1.00--------1.00----------------------
...............................................................................................................................................................................TTCTCTGTTGCATCTCCCCGT......................................................2112.002.00------1.00----------1.00------------------------------
............................................TTTTTTAAATTTCTTTATTTACATTTTATG................................................................................................................................................................................3012.002.00-----2.00------------------------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGT......................................................2011.001.00-------1.00----------------------------------------
....................................................................................................................................TTGGGGGAGATGACACAAAGAA................................................................................................2211.001.00----------------------------------------------1.00-
.....................................ATTTTCTTTTTTTAACGG...................................................................................................................................................................................................181.000.00---------------------------1.00--------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCTTAT....................................................221.000.00--------1.00---------------------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGTATAG..................................................2411.001.00----------------------1.00-------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGTATA...................................................2311.001.00------------------------------1.00-----------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGTT.....................................................2111.001.00--------------------------------------------1.00---
................................................................................................................................................................................TCTCTGTTGCATCTCCCCG.......................................................1911.001.00-------------------1.00----------------------------
.....................................ATTTTCTTTTTTTAAATTTCTTCTTT...........................................................................................................................................................................................261.000.00-------------1.00----------------------------------
..........................................CTTTTTTTAAATTTCTCCAG............................................................................................................................................................................................201.000.00----------------------------------1.00-------------
........................................................................................................................TTGGGTATTTTATTGTTTA...............................................................................................................191.000.00----------------------------------------1.00-------
.....................................................................................................................................TGGGGGAGATGACACAAAGAAAT..............................................................................................2311.001.00--------1.00---------------------------------------
.....................................................................................................................................................................................................................................CAAGTCTGACACGATG.....1611.001.00---------------------1.00--------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCGTAT.....................................................211.000.00------------1.00-----------------------------------
.....................................................................................................................................TGGGGGAGATGACACAAAGAA................................................................................................2111.001.00---------1.00--------------------------------------
......................................................................................................................................................................................................................GTATATCTGTAAAAAC....................1630.330.33-----------------------------------------------0.33

Antisense strand
CACAATTTTCTGCTAACGTGTGGCAGTTTACACTGCTATTTTCTTTTTTTAAATTTCTTTATTTACATTTTATGTTAAAATTTTTATATGATCTTAAGGAATAAAATATAGTAGGACATTTTGGGTATTTTATTGGGGGAGATGACACAAAGAAATAGCTTGTGAGCATATTTCCTTCTCTGTTGCATCTCCCCGTATAGATAAGGCATCTAGAGTATATCTGTAAAAACAAGTCTGACACGATGAGAGA
.......................................................................................................................................(((((((((..(((..(((((((((....))).))))))......)))..)))))))))........................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR189784GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532886(GSM532886)
G850T. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR040006(GSM532891)
G601N. (cervix)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343335SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
..................................................................................................................................................................TGAGCATATTTCCTTCTA...................................................................... 183.000.00----3.00-------------------------------------------
..................................................................................................................................................................TGAGCATATTTCCTTAGC...................................................................... 183.000.00---------------1.00---------------1.00---1.00------------
.................GTGTGGCAGTTTACATCAG...................................................................................................................................................................................................................... 192.000.00----------1.00-1.00-----------------------------------
......................................................................................................AAAATATAGTAGGACTACA................................................................................................................................. 191.000.00--------------------------1.00---------------------
..............................................TTTTAAATTTCTTTATTAAG........................................................................................................................................................................................ 201.000.00----------1.00-------------------------------------
...............................................................................................................................................................................TTCTCTGTTGCATCTAGAT........................................................ 191.000.00---------1.00--------------------------------------
...................................................................................................AATAAAATATAGTAGGATAT................................................................................................................................... 201.000.00---1.00--------------------------------------------
.............................ACACTGCTATTTTCTGTTC.......................................................................................................................................................................................................... 191.000.00------------------------------------------1.00-----