ID: uc004fju.6
GENE: IRAK1(6)
chrX:153284189-153284475-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(4)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(15)
BREAST 		(43)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(4)
HELA 		(4)
LIVER 		(2)
OTHER 		(21)
SKIN 		(1)
XRN.ip

Sense strand
CTGCTTCCCTGTGGCCTCCACCGCCATCTCCAGCCCCTTCTTCTACCAAGGTAGGTGTCCCCTGCCCCCCAGGGAAGATTCGAGACAAGGAGGAAGGAATTCAGCCTTTGATGTAGCGCAGAGCCCCAGTCAGCCAAGCTGGGTCAGCTGGGAGGCAGCTGTGGTGGGGAGAGCCTGGAGCCTTGGGCAGAAGGGAAGAGACAGGGACCCCACCTGATCCAGGCTCTCTTCCCACAGCCAGGCCCAGAGAGCTCAGTGTCCCTCCTGCAGGGAGCCCGCCCCTTTCC
..............................................................................................................................................................((((((.((((((((((((((.((((......)))).......((((.......)))).))))))))))))))))))))..................................................
...........................................................................................................................................................156..............................................................................237................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR189784SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189787SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189785SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189786DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR037938(GSM510476)
293Red. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR038857(GSM458540)
D20. (cell line)		SRR343334SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029127(GSM416756)
A549. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037931(GSM510469)
293GFP. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038862(GSM458545)
MM472. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM956925PAZD5SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038861(GSM458544)
MM466. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAG..................................................231169.00169.00112.0023.0010.00-1.00---3.001.003.001.00---1.001.001.00----2.00-1.00----2.00------------------------------------1.00--------1.00---1.00--------1.00-1.00----------1.00---1.00--
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGT.................................................241151.00169.0065.007.005.0012.006.00-4.006.002.001.00-3.001.003.001.00-2.00-3.001.001.00--1.001.001.00-1.00---1.00-2.002.001.00--1.00--2.001.00--1.001.00----1.00-------1.00-1.00--1.001.00------1.00-1.00---1.00-1.00-----1.00---------1.00--1.00--------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACA...................................................22168.0068.0056.001.002.00------1.00---------------1.00-1.00--------------1.00-------1.00-------1.00------------------1.00-------------------1.00-----1.00----
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCAC....................................................21127.0027.0018.001.001.00-2.00--------1.00----------------------1.00--------------------------------------------1.00-----1.00---1.00----------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGA.................................................24114.00169.001.003.00------1.002.00-------1.00-------------------1.00--------------------------------1.001.00-1.00--------------------------1.00-1.00-----
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCA.....................................................2017.007.006.00------1.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................TGGTGGGGAGAGCCTGGAG...........................................................................................................1916.006.00-----6.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAT..................................................2316.0068.003.001.00-----------------2.00----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGTAA...............................................2614.00169.003.00-------------------------1.00---------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCAAT...................................................2214.007.001.002.00-------------------1.00--------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTCCCACT...................................................263.000.002.00-------------------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCTACA...................................................223.000.002.00---------1.00-------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCACAG...................................................223.000.003.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAA..................................................2313.0068.003.00-----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GATCCAGGCTCTCTTCCCACAG..................................................2213.003.001.00---2.00-------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTCC.......................................................2213.003.00----------------------------2.00--------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACT...................................................2213.0027.003.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCGCAG..................................................232.000.002.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTGATCCAGGCTCTCTTCCCACA...................................................2312.002.002.00-----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GATCCAGGCTCTCTTCCCACAGT.................................................2312.003.002.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................AGCCAGGCCCAGAGAGCTCAGTGTCCCTCCCG....................322.000.00--------------------------------------------------------------------1.00--------------------1.00------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACCGT.................................................2412.0027.00---------------------------------------1.00-----------------------------------------------------1.00--------------
........................................................................................................................................................................................................................ATCCAGGCTCTCTTCCCACAG..................................................2112.002.001.00-1.00---------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTC........................................................2112.002.00--------------2.00---------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTCCC......................................................2312.002.00-------------------------------------1.00----------1.00-----------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCATTTA.................................................2412.007.002.00-----------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ATCCAGGCTCTCTTCCCACA...................................................2012.002.001.00--------------------1.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CCTGATCCAGGCTCTCTTCCCACG...................................................242.000.00-----2.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGTT................................................2512.00169.00-------------------------------1.00---------------------------------------------------1.00------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACCG..................................................2312.0027.001.00-1.00---------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTCCCA.....................................................2412.002.00--------------------------------2.00---------------------------------------------------------------------------
.................................................................................................................................................................TGGTGGGGAGAGCCTGGAGC..........................................................................................................2012.002.00---------------1.00--------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................................................CAGGCTCTCTTCCCACAG..................................................1812.002.001.001.00----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCATT...................................................2212.007.002.00-----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GATCCAGGCTCTCTTCCCACA...................................................2112.002.001.00------------------------------------------------------------------------------------1.00----------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACACC.................................................2411.0068.00------------------------------1.00-----------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTGATCCAGGCTCTCTTCCCATT...................................................231.000.001.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CCAGAGAGCTCAGTGTCCC.........................1911.001.00---------------------------------------------------------------1.00--------------------------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTCCCAT....................................................2511.002.00-----1.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACATA.................................................2411.0068.00--------------------------------------------------------------1.00---------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCCCA...................................................221.000.001.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACATG.................................................2411.0068.00-----------------------------------1.00------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACC...................................................2211.0027.00-------------------------------------------------------1.00----------------------------------------------------
.................................................................................................................................................................................................................................................GCCCAGAGAGCTCAGTGTCCCTC.......................2311.001.00----------------------------------------------------------------------------1.00-------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCTCAC....................................................211.000.001.00-----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTTCC......................................................231.000.00------------------------------------------------------------1.00-----------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGTC................................................2511.00169.00------1.00-----------------------------------------------------------------------------------------------------
.........................ATCTCCAGCCCCTTCTTCTACCAAGCCA..........................................................................................................................................................................................................................................281.000.00--------------------1.00---------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACACT.................................................2411.0068.00------------1.00-----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................GCCCAGAGAGCTCAGTCA............................181.000.00----------------------------------------------------------------------------------1.00-------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTCCCACA...................................................2611.001.001.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCATAGT.................................................2411.007.00-----------------------------------------------1.00------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGAT................................................2511.00169.001.00-----------------------------------------------------------------------------------------------------------
..........................................................................AAGATTCGAGACAAGGAGG..................................................................................................................................................................................................1911.001.00-------------------------------------------1.00----------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGAC................................................2511.00169.00------1.00-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CCAGGCTCTCTTCCCATAGT.................................................201.000.001.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................CAGCTGTGGTGGGGAGAGCCCGG.............................................................................................................231.000.00------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................................................GCTGTGGTGGGGAGAGCCTGGATATT........................................................................................................261.000.00---------1.00--------------------------------------------------------------------------------------------------
.................................................................................................................................................................TGGTGGGGAGAGCCTGGAGCCTTAA.....................................................................................................251.000.00----------------------------------------1.00-------------------------------------------------------------------
............................................................................................................................................................AGCTGTGGTGGGGAGAGCCTGGTA...........................................................................................................241.000.00----------------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................................................CAGCTGTGGTGGGGAGAGCCTGGA............................................................................................................2411.001.00-----------------1.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACTAT.................................................2411.0027.001.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCAA....................................................2111.007.001.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGTAC...............................................2611.00169.001.00-----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................GGAGAGCCTGGAGCCCCG......................................................................................................181.000.00-------------------------------------------------1.00----------------------------------------------------------
........................................................................................................................................................................................................................ATCCAGGCTCTCTTCCCACATC.................................................2211.002.00----------1.00-------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCAGT...................................................2211.007.001.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCACAT...................................................221.000.001.00-----------------------------------------------------------------------------------------------------------
..................................................................................AGACAAGGAGGAAGGAGATG.........................................................................................................................................................................................201.000.00---------------------------------------------------------------------1.00--------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAGTTA...............................................2611.00169.00--------------------------------------------------------------------------------------------------------1.00---
.....................................................................................................................................................................................................................CTGATCCAGGCTCTCTTCCCACAAT.................................................2511.002.001.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................GCTGTGGTGGGGAGAGCCTGG.............................................................................................................2111.001.00-----------------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTGATCCAGGCTCTCTTCCCACAG..................................................2411.001.001.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................CAGCTGTGGTGGGGAGCCTG................................................................................................................201.000.00------------1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................AGAGCTCAGTGTCCCTCCTGCAGGGAGCC...........2911.001.00--------------------------------------------------------------------------------------------------1.00---------
....................................................................................................................................................................TGGGGAGAGCCTGGAGCCTTGG.....................................................................................................2211.001.00------------------------------------------------------------------------------------1.00-----------------------
............................................................................GATTCGAGACAAGGAGGAAGGAATTC.........................................................................................................................................................................................2611.001.00-----------------------------------------------------1.00------------------------------------------------------
.................................................................................................................................................................................................................................................GCCCAGAGAGCTCAGTCGGT..........................201.000.00---------------------------------------------------------1.00--------------------------------------------------
..................................................................................................................................CAGCCAAGCTGGGTCTCCA..........................................................................................................................................191.000.00---------------------------------------1.00--------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAAC.................................................2411.0068.00--1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACATT.................................................2411.0068.001.00-----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CAGAGAGCTCAGTGTAGGG........................191.000.00----------------------------------------------------1.00-------------------------------------------------------
..................................................................................................................................................................................................................CACCTGATCCAGGCTCTCTTCCCAA....................................................2511.002.001.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CCAGGCTCTCTTCCCACAG..................................................1911.001.00-----------1.00------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CTGATCCAGGCTCTCTTCCCACAT..................................................2411.002.001.00-----------------------------------------------------------------------------------------------------------
..................................................................................AGACAAGGAGGAAGGCTGA..........................................................................................................................................................................................191.000.00--------------------------------------------1.00---------------------------------------------------------------
..............................................................................................................................................................................................AAGGGAAGAGACAGGGACCCCA...........................................................................2211.001.00--------------------------1.00---------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATCCAGGCTCTCTTCCCACAC..................................................2311.0068.001.00-----------------------------------------------------------------------------------------------------------
..................................................................................AGACAAGGAGGAAGGAGAT..........................................................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------1.00------------
.......................CCATCTCCAGCCCCTTCT......................................................................................................................................................................................................................................................1830.330.33-----------------------------------------------------------------------------------------------------------0.33

Antisense strand
CTGCTTCCCTGTGGCCTCCACCGCCATCTCCAGCCCCTTCTTCTACCAAGGTAGGTGTCCCCTGCCCCCCAGGGAAGATTCGAGACAAGGAGGAAGGAATTCAGCCTTTGATGTAGCGCAGAGCCCCAGTCAGCCAAGCTGGGTCAGCTGGGAGGCAGCTGTGGTGGGGAGAGCCTGGAGCCTTGGGCAGAAGGGAAGAGACAGGGACCCCACCTGATCCAGGCTCTCTTCCCACAGCCAGGCCCAGAGAGCTCAGTGTCCCTCCTGCAGGGAGCCCGCCCCTTTCC
..............................................................................................................................................................((((((.((((((((((((((.((((......)))).......((((.......)))).))))))))))))))))))))..................................................
...........................................................................................................................................................156..............................................................................237................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR189784SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189787SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189785SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189786DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR037938(GSM510476)
293Red. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR038857(GSM458540)
D20. (cell line)		SRR343334SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029127(GSM416756)
A549. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037931(GSM510469)
293GFP. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038862(GSM458545)
MM472. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR191426(GSM715536)
149genomic small RNA (size selected RNA from . (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM956925PAZD5SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038861(GSM458544)
MM466. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................................................................................TCCAGGCTCTCTTCCCACAGC................................................. 2111.001.00---------------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................CCCCAGTCAGCCAAGCTGGTGC.............................................................................................................................................. 221.000.00------1.00-----------------------------------------------------------------------------------------------------
.............................CCAGCCCCTTCTTCTCCTG............................................................................................................................................................................................................................................... 191.000.00--------------1.00---------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................AGCTCAGTGTCCCTCCTTGCC................. 211.000.00------1.00-----------------------------------------------------------------------------------------------------
.......................CCATCTCCAGCCCCTTCG...................................................................................................................................................................................................................................................... 181.000.00----------------------------------------------------------------------------------------------1.00-------------
.................................................................................................................................................................................................................................CTCTTCCCACAGCCAGGGGA.......................................... 201.000.00------------------------------1.00-----------------------------------------------------------------------------
.......................CCATCTCCAGCCCCTTAGAC.................................................................................................................................................................................................................................................... 201.000.00--------------------------------------------------------1.00---------------------------------------------------
.......................................................................................................................................................................................................................................................AGAGCTCAGTGTCCCTCCTGCG.................. 221.000.00------------------------------------------------------1.00-----------------------------------------------------
..........................................................................................................................................................................................GCAGAAGGGAAGAGAGCTC.................................................................................. 191.000.00--1.00---------------------------------------------------------------------------------------------------------
.......................CCATCTCCAGCCCCTTTA...................................................................................................................................................................................................................................................... 181.000.00--------------------------------------------------------------------------------------------1.00---------------
.........................................................................................................................AGCCCCAGTCAGCCAAG..................................................................................................................................................... 1730.330.33----------------------------------------------------------------------------------------------------------0.33-
................................GCCCCTTCTTCTACCA............................................................................................................................................................................................................................................... 1630.330.33---------------0.33--------------------------------------------------------------------------------------------