ID: uc004fjr.12
GENE: IRAK1(12)
chrX:153285000-153285177-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(2)
BRAIN 		(18)
BREAST 		(36)
CELL-LINE 		(10)
CERVIX 		(3)
HEART 		(3)
HELA 		(10)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(33)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTTCTACAAAGTGATGGACGCCCTGGAGCCCGCCGACTGGTGCCAGTTCGGTGGGTGGCGGCGGGCTGCCGGGGGGCGGGAGGCGCGCGGGCTCCTGGCGCCGACGCCTGACGCCCCCCGCCCCGCAGCCGCCCTGATCGTGCGCGACCAGACCGAGCTGCGGCTGTGCGAGCGCTCC
.............................................................((((..((.((((((((..(((((..(((((.....)).))).)))))..)))))))))))))).....................................................
.............................................................62................................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577579(Rovira)
total RNA. (breast)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM532889(GSM532889)
G576N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577453(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191441(GSM715551)
106genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189782TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR040042(GSM532927)
G428N. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
...........................................................................................................CTGACGCCCCCCGCCCCGCAGT.................................................22118.0010.00--1.00---------------1.00------1.001.00------1.00--1.00----1.00----------1.00---1.00-------1.00--1.00----------1.001.00----1.00------1.00-----1.00-------1.00-1.00----------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGA.................................................22117.0010.00--2.00-1.00---1.00--------1.00------2.00-1.002.001.001.00--------1.00----1.00--1.00---------------------------------------------------1.00--------------1.00----------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAG..................................................21110.0010.00----------1.00-----------1.001.00-----1.00-1.00--------1.00----1.00------------------------------------1.00-----1.00-------------------1.00---------------------
...................................................................GCCGGGGGGCGGGAGGCGCGCGA........................................................................................2315.001.005.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCGC..........................................................................................2114.004.00-4.00--------------------------------------------------------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGGGC......................................................................................2314.004.00-------------------2.00-----------------------------1.00-----------------------------------1.00--------------------------------------------
..........................................................CGGCGGGCTGCCGGGGGGCGGGAG................................................................................................2414.004.00------4.00---------------------------------------------------------------------------------------------------------------------------
....TACAAAGTGATGGACGCCCTGGAGC.....................................................................................................................................................2514.004.00---4.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTATC..............................................2513.0010.00---------------3.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCA...................................................2013.003.00----1.00------------------------------------------------------------------1.00----1.00-----------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTT................................................2312.0010.00------------------------------------------------------------------------------------------1.00-1.00-------------------------------------
....................................................................CCGGGGGGCGGGAGGCGGCG..........................................................................................202.000.00-------1.00--------------------------------------------------------------------------------------1.00-----------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCGCGG........................................................................................2312.002.002.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................GGGGCGGGAGGCGCGCGGGCA.....................................................................................2112.001.00--------------------------------------------1.00------------------1.00------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGAT................................................2312.0010.00--1.00--------------------------------------------------------------------------------1.00----------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGT.................................................2112.001.00------------------------------------------1.00----------------------------------------------------------1.00----------------------------
........AAGTGATGGACGCCCTGG........................................................................................................................................................1812.002.00-------2.00--------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGAAT...............................................2412.0010.00--1.00--------------------------------------------------------------------------------------1.00----------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGAA................................................2312.0010.00-------------1.00------------------------------------------------1.00-------------------------------------------------------------------
........AAGTGATGGACGCCCTGGA.......................................................................................................................................................1912.002.00--------------------------------2.00-------------------------------------------------------------------------------------------------
........................................................................GGGGCGGGAGGCGCGCGGGC......................................................................................2011.001.00----------------------------1.00-----------------------------------------------------------------------------------------------------
..............................................TTCGGTGGGTGGCGGCGCA.................................................................................................................191.000.00---------------------------------------------------------1.00------------------------------------------------------------------------
............GATGGACGCCCTGGAGCCCGCCGAC.............................................................................................................................................2511.001.00---------------------------------------------------1.00------------------------------------------------------------------------------
.......AAAGTGATGGACGCCCTGGAG......................................................................................................................................................2111.001.00-----------1.00----------------------------------------------------------------------------------------------------------------------
..............................................................................................................ACGCCCCCCGCCCCGGGCG.................................................191.000.00--------------1.00-------------------------------------------------------------------------------------------------------------------
........AAGTGATGGACGCCCTGGAGCCC...................................................................................................................................................2311.001.00------------------------------------------------1.00---------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGGGCT.....................................................................................2411.001.00------------------------------------------------------------------------------------------------------------------1.00---------------
.......AAAGTGATGGACGCCCTTGAG......................................................................................................................................................211.000.00-----------1.00----------------------------------------------------------------------------------------------------------------------
................GACGCCCTGGAGCCCGCCGACTGGCG........................................................................................................................................261.000.00--------------------------------------------------------------------1.00-------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGAA................................................2211.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGTGGCGGCGGGCTGTAA...........................................................................................................201.000.00--------1.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................CCCTGATCGTGCGCGAC..............................1711.001.00-----------------------------------------------------------------------------1.00----------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGG........................................................................................2111.001.00-----1.00----------------------------------------------------------------------------------------------------------------------------
......CAAAGTGATGGACGCCCTGGAGCC....................................................................................................................................................2411.001.00----------------------------------1.00-----------------------------------------------------------------------------------------------
..TCTACAAAGTGATGGACGCCC...........................................................................................................................................................2111.001.00---------1.00------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTA................................................2311.0010.00--1.00-------------------------------------------------------------------------------------------------------------------------------
...........................................................................GCGGGAGGCGCGCGGTCGG....................................................................................191.000.00----------1.00-----------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCATT.................................................2211.003.00----------1.00-----------------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGC....................................................1811.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................................TGCCGGGGGGCGGGAGGCGCGC..........................................................................................2211.001.00-------------------------------------------------------1.00--------------------------------------------------------------------------
..........................................................................................................CCTGACGCCCCCCGCCCCG.....................................................1911.001.00-----------------------------------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................CGCGACCAGACCGAGCTG..................1811.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------
...............................................................................................TGGCGCCGACGCCTGACG.................................................................1811.001.00------------------------------------------------------------------------------------------------1.00---------------------------------
...................................................TGGGTGGCGGCGGGCTGC.............................................................................................................1811.001.00-----1.00----------------------------------------------------------------------------------------------------------------------------
..............TGGACGCCCTGGAGCCCGCCGAC.............................................................................................................................................2311.001.00----1.00-----------------------------------------------------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGGCG..........................................................................................191.000.00------------------------------------------------------------------1.00---------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGGGT......................................................................................2311.001.00------------------1.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................GCCCTGATCGTGCGCGACCA............................2011.001.00-------1.00--------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTAT...............................................2411.0010.00-----------------------------------------------------1.00----------------------------------------------------------------------------
......................................................................GGGGGGCGGGAGGCGCGCGGGCAAT...................................................................................251.000.00--------------------------------------------------1.00-------------------------------------------------------------------------------
.......................................................................GGGGGCGGGAGGCGCGGGGC.......................................................................................201.000.00----1.00-----------------------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCCGTT................................................2211.001.00-------------------------------------------------------------------------------------------------------------1.00--------------------
...................................................................GCCGGGGGGCGGGAGGCGGCG..........................................................................................211.000.00----1.00-----------------------------------------------------------------------------------------------------------------------------
.............................................................................GGGAGGCGCGCGGGCAAG...................................................................................181.000.00------------1.00---------------------------------------------------------------------------------------------------------------------
....TACAAAGTGATGGACGCCCTGGAGCCC...................................................................................................................................................2711.001.00---1.00------------------------------------------------------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCG.........................................................................................2011.001.00-----1.00----------------------------------------------------------------------------------------------------------------------------
...................................................TGGGTGGCGGCGGGCGG..............................................................................................................171.000.00---------------------------------------1.00------------------------------------------------------------------------------------------
.........................................................GCGGCGGGCTGCCGGGGGGGGG...................................................................................................221.000.00------------------------------------------------------------1.00---------------------------------------------------------------------
....................................................................................................................................................CAGACCGAGCTGCGGCTGTGCGAGCGCTCC3011.001.00-------------------------------------------------------------------------------------------------------1.00--------------------------
............................................................................................................TGACGCCCCCCGCCCCGCA...................................................1911.001.00---------------------------------------------------------------------------------------------1.00------------------------------------
..............................................................................................................................................CGCGACCAGACCGAGCTGCGGC..............2211.001.00--------------1.00-------------------------------------------------------------------------------------------------------------------
...........................................................................GCGGGAGGCGCGCGGGCTG....................................................................................191.000.00---------------------------------------------------------------------------1.00------------------------------------------------------
............................................AGTTCGGTGGGTGGCGGCG...................................................................................................................1911.001.00------------------------------1.00---------------------------------------------------------------------------------------------------
...........................................................GGCGGGCTGCCGGGGGGCA....................................................................................................191.000.00---------------------------------------------------------------------1.00------------------------------------------------------------
..................................................................................................................................................ACCAGACCGAGCTGCGGCT.............1911.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGGG.......................................................................................2211.001.00---------------------------------------------------------------------------------------------------1.00------------------------------
..................................................................................................................................................ACCAGACCGAGCTGCGG...............1711.001.00---------1.00------------------------------------------------------------------------------------------------------------------------
...............................................................................................TGGCGCCGACGCCTGCGGG................................................................191.000.00--------------------------------------------------------------------------------------1.00-------------------------------------------
.......................................................................GGGGGCGGGAGGCGCGCGA........................................................................................191.000.00--------------------------------------------------------------------------------1.00-------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGGCGG.........................................................................................221.000.00----1.00-----------------------------------------------------------------------------------------------------------------------------
..............TGGACGCCCTGGAGCCCGCC................................................................................................................................................2011.001.00-----------------------------------------------------------1.00----------------------------------------------------------------------
....................................................................CCGGGGGGCGGGAGGCGCGCGGA.......................................................................................231.000.00-------------1.00--------------------------------------------------------------------------------------------------------------------
............................................................................CGGGAGGCGCGCGGGTCGG...................................................................................191.000.00----------------------------------------------------------------------------------------------------------1.00-----------------------
..........................................................................................................CCTGACGCCCCCCGCCCCGCG...................................................211.000.00-----------------1.00----------------------------------------------------------------------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCG...........................................................................................2011.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................CGCGACCAGACCGAGCTGCGGCT.............2311.001.00-----------------------------------------------------------------------------------------------1.00----------------------------------
................................CCGACTGGTGCCAGTTCG................................................................................................................................1811.001.00------------------------------1.00---------------------------------------------------------------------------------------------------
...................................................................GCCGGGGGGCGGGAGTCG.............................................................................................181.000.00------------1.00---------------------------------------------------------------------------------------------------------------------
...CTACAAAGTGATGGACGCCCTGGAGC.....................................................................................................................................................2611.001.00------------------------------------------------------------------------------------------------------1.00---------------------------
...........................................................................................................................................GTGCGCGACCAGACCGAG.....................1811.001.00------------------------------------------------------1.00---------------------------------------------------------------------------
...........................................................................................................................................GTGCGCGACCAGACCGAGCTGCGGC..............2511.001.00-----------1.00----------------------------------------------------------------------------------------------------------------------
......................................................................................................GACGCCTGACGCCCCCCGCCC.......................................................2111.001.00--------------------1.00-------------------------------------------------------------------------------------------------------------
..............TGGACGCCCTGGAGCCCGCCGACTGGTGCCAGC...................................................................................................................................331.000.00---------------------1.00------------------------------------------------------------------------------------------------------------
....................CCCTGGAGCCCGCCGACT............................................................................................................................................1811.001.00---------1.00------------------------------------------------------------------------------------------------------------------------
..........................................................CGGCGGGCTGCCGGGGGGCG....................................................................................................2011.001.00----------------------------------------------------------------------------------------------------------------1.00-----------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTC................................................2311.0010.00-------------1.00--------------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAG..................................................2011.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGA.................................................2111.001.00---------------------------------------------------------------------------------------1.00------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCTTT.................................................221.000.00---------------------------------1.00------------------------------------------------------------------------------------------------
..........................................................CGGCGGGCTGCCGGGGGGCAA...................................................................................................211.000.00--------------------------------------------------------------------------------------------------------1.00-------------------------
...................................................TGGGTGGCGGCGGGCGC..............................................................................................................171.000.00-----1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................CGGGCTGCCGGGGGGCGGGAGG...............................................................................................2211.001.001.00---------------------------------------------------------------------------------------------------------------------------------
.TTCTACAAAGTGATGGACGCCCTGG........................................................................................................................................................2511.001.00---1.00------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAAGAT...............................................2311.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------
............GATGGACGCCCTGGAGCCCGCCG...............................................................................................................................................2311.001.00----------------------------------------------------------------------------------------------------1.00-----------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGTAA...............................................2311.001.00-------------------------------1.00--------------------------------------------------------------------------------------------------
...CTACAAAGTGATGGACGCCCTGGCGC.....................................................................................................................................................261.000.00-----------------------1.00----------------------------------------------------------------------------------------------------------
...........................................................GGCGGGCTGCCGGGGGGAGG...................................................................................................201.000.00---------------------------------------------------------------------------------1.00------------------------------------------------
......................................................................................................................................TGATCGTGCGCGACCAGACCGAGCTG..................2611.001.00---1.00------------------------------------------------------------------------------------------------------------------------------
...................................................TGGGTGGCGGCGGGCTGTAG...........................................................................................................201.000.00--------------------1.00-------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGAAT...............................................2311.001.00----------------------1.00-----------------------------------------------------------------------------------------------------------
.............ATGGACGCCCTGGAGCCCGCCGACTGGCG........................................................................................................................................291.000.00---------------------1.00------------------------------------------------------------------------------------------------------------
...........................................................GGCGGGCTGCCGGGGTATA....................................................................................................191.000.00----------------------------------------------------------------------1.00-----------------------------------------------------------
.............................................................................................................................................GCGCGACCAGACCGAGCTGCGG...............2211.001.00-----------------------------------------------------------------1.00----------------------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCGCG.........................................................................................2211.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................CTGCCGGGGGGCGGGCGC...............................................................................................18100.700.50----------------0.20--------------------------------------------------------------------------------------------------0.10-0.10----0.100.100.10-----
.................................................................CTGCCGGGGGGCGGGCG................................................................................................17100.600.50-------------------------------------0.10-0.10---------------------------------------------------------------------------0.20-0.10---------0.10--
...........................................................................GCGGGAGGCGCGCGGGC......................................................................................1720.500.50-----0.50----------------------------------------------------------------------------------------------------------------------------
.................................................................CTGCCGGGGGGCGGG..................................................................................................15100.500.50-------------------------------------------------------------------------------------------------------------------0.100.30---------0.10---
...............................................TCGGTGGGTGGCGG.....................................................................................................................1460.330.33-----------------0.17-----------------------------------------------------------------------------------------------------0.17----------
..................................................................................................................................................ACCAGACCGAGCTG..................1470.140.14-------------------------------------------------------------------------------------------------------------------------0.14--------
..................................................GTGGGTGGCGGCGGG.................................................................................................................1590.110.11-----------------------------------0.11----------------------------------------------------------------------------------------------
.................................................................CTGCCGGGGGGCGGGCGCC..............................................................................................19100.100.50---------------------------------------------------------------------------------------------------------------------------------0.10
.................................................................CTGCCGGGGGGCGGGCGCA..............................................................................................19100.100.50-----------------------------------------------------------------------------------------------------------------------------0.10----
.................................................................CTGCCGGGGGGCGGGCGT...............................................................................................18100.100.50--------------------------------------0.10-------------------------------------------------------------------------------------------
.................................................................CTGCCGGGGGGCGGGC.................................................................................................16100.100.50--------------------------------------------------------------------------------------------------------------------------------0.10-

Antisense strand
CTTCTACAAAGTGATGGACGCCCTGGAGCCCGCCGACTGGTGCCAGTTCGGTGGGTGGCGGCGGGCTGCCGGGGGGCGGGAGGCGCGCGGGCTCCTGGCGCCGACGCCTGACGCCCCCCGCCCCGCAGCCGCCCTGATCGTGCGCGACCAGACCGAGCTGCGGCTGTGCGAGCGCTCC
.............................................................((((..((.((((((((..(((((..(((((.....)).))).)))))..)))))))))))))).....................................................
.............................................................62................................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577579(Rovira)
total RNA. (breast)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM532889(GSM532889)
G576N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577453(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191441(GSM715551)
106genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189782TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR040042(GSM532927)
G428N. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
................GACGCCCTGGAGCCCGCGTTT............................................................................................................................................. 211.000.00--------------------------------------------------------------------------1.00-------------------------------------------------------
............................................................GCGGGCTGCCGGGGGGCGC................................................................................................... 191.000.00----------------1.00-----------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCT...................................................... 171.000.00------------1.00---------------------------------------------------------------------------------------------------------------------
................................................................GCTGCCGGGGGGCGGGGCCG.............................................................................................. 201.000.00--------------1.00-------------------------------------------------------------------------------------------------------------------
................................................................GCTGCCGGGGGGCGGGCC................................................................................................ 181.000.00-------------------------------------------------------------1.00--------------------------------------------------------------------
....................................................................................................................CCCGCCCCGCAGCCGCCT............................................ 181.000.00-------------------------------------------------------------------------1.00--------------------------------------------------------
................................................................................................................................CCGCCCTGATCGTGCGTG................................ 181.000.00------------------------------------------------------------------------1.00---------------------------------------------------------
........................................................GGCGGCGGGCTGCCGGG......................................................................................................... 171.000.00-------------------------------------1.00--------------------------------------------------------------------------------------------
..............................................................................................................ACGCCCCCCGCCCCGGGGC................................................. 191.000.00----------------------------------------------------------1.00-----------------------------------------------------------------------
........................................................................GGGGCGGGAGGCGCGTGG........................................................................................ 181.000.00-----------------------------------------------1.00----------------------------------------------------------------------------------
................................................................................................................GCCCCCCGCCCCGCATGT................................................ 181.000.00--------------------------------------------------------------------------------------------------------------1.00-------------------
.........................................................................GGGCGGGAGGCGCGCG......................................................................................... 1660.170.17----------------------------------------------------------------------------------------------------------------------0.17-----------
...................................................................................................................CCCCGCCCCGCAGCCGC.............................................. 1760.170.17------------------------------------------------------------------------------------------------------------------------0.17---------
.................................................................................................GCGCCGACGCCTG.................................................................... 1380.120.12----------------------------------0.12-----------------------------------------------------------------------------------------------
..............................................................GGGCTGCCGGGGGGC..................................................................................................... 15100.100.10------------------------------------0.10---------------------------------------------------------------------------------------------