ID: uc004bvw.9
GENE: PKN3(9)
chr9:131476351-131476525+


(1)
AGO1.ip 		(2)
AGO2.ip 		(3)
B-CELL 		(1)
BREAST 		(16)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(1)
LIVER 		(1)
OTHER 		(5)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GAGGCGGCCCCGGCTGCAGAGGCAGGAACGCATCTTCTCTAAACGCAGAGGTGTGGAGGGAATGGGGGCTATGTGTGAGGGAGCAGGGCTGGGGTCCCGGGACTAAGCTCCCCCTTTTCTCCCAGGCCAGGACTTCCTGAGGGCTTCGCAGATGAACCTCGGCATGGCGGCCTGG
...................................................((.((((..((.(((((.....(((......))).((((..((((....)))).)))))))))))..))))))...................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189783SRR189784GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR343334DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
..................................................GTGTGGAGGGAATGGGGGCTATGT.....................................................................................................24115.0015.0011.002.001.00-------------1.00----------------------
.................................CTTCTCTAAACGCAGAG.............................................................................................................................17111.0011.00----5.00-3.00---------------1.00-----1.00---1.00------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCAG..................................................2218.008.00-4.00-----------2.00--1.00----------1.00-----------
..................................................GTGTGGAGGGAATGGGGGCTAT.......................................................................................................2218.008.005.00-------------1.00---1.00--------------1.00-----
..................................................GTGTGGAGGGAATGGGGGCTATGTGTGAGGGAGCAGGGCTGGGGTCCCGGGACTAAGCTCCCCCTTTTCTCCCAGT.................................................768.000.00---8.00-----------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCAGT.................................................2317.008.00-3.00------1.00-----1.00----1.00------1.00------------
...................................................TGTGGAGGGAATGGGGGCTATGT.....................................................................................................2315.005.00--2.00-----1.001.00-1.00---------------------------
..................................................GTGTGGAGGGAATGGGGGCTATG......................................................................................................2313.003.00-3.00-------------------------------------
..................................................GTGTGGAGGGAATGGGGGCTATAAT....................................................................................................2513.008.00--3.00------------------------------------
..................................................GTGTGGAGGGAATGGGGGCTATAT.....................................................................................................2413.008.00-------3.00-------------------------------
...................................................TGTGGAGGGAATGGGGGCTATG......................................................................................................2212.002.00--1.00--1.00---------------------------------
...................................................TGTGGAGGGAATGGGGGCTATGTT....................................................................................................2412.005.00-----2.00---------------------------------
.........................................................................................................................................TGAGGGCTTCGCAGATGAAC..................2012.002.00---------------2.00-----------------------
...................................................TGTGGAGGGAATGGGGGCTATGA.....................................................................................................2312.002.00--1.00--------1.00---------------------------
..................................................GTGTGGAGGGAATGGGGGCTATGA.....................................................................................................2412.003.00--2.00------------------------------------
................................TCTTCTCTAAACGCAGAG.............................................................................................................................1812.002.00-----------------------1.00------1.00--------
..................................................GTGTGGAGGGAATGGGGGCTA........................................................................................................2112.002.00--1.00---------------------1.00--------------
...................................................TGTGGAGGGAATGGGGGCTAT.......................................................................................................2112.002.00----------1.00-----------------------1.00----
............................................................................GAGGGAGCAGGGCTGGGGTC...............................................................................2021.501.50-----------------1.50---------------------
...................................................TGTGGAGGGAATGGGGGCTATGAT....................................................................................................2411.002.00----------1.00----------------------------
................................................................................................................................AGGACTTCCTGAGGGCTG.............................181.000.00--------1.00------------------------------
.........CCGGCTGCAGAGGCAGGA....................................................................................................................................................1811.001.00------------1.00--------------------------
....CGGCCCCGGCTGCAGTGC.........................................................................................................................................................181.000.00------1.00--------------------------------
..................................................GTGTGGAGGGAATGGGGGCTATGTGTGAGGGAGCAGGGCTGGGGTCCCGGGACTAAGCTCCCCCTTTTCTCCCCGT.................................................761.000.00---1.00-----------------------------------
......................................................................................................CTAAGCTCCCCCTTTTCTCCCAGT.................................................241.000.00--1.00------------------------------------
...............................................................................................................................CAGGACTTCCTGAGGGCTTC............................2011.001.00------------1.00--------------------------
...................................................TGTGGAGGGAATGGGGGCTATGTAT...................................................................................................2511.005.00-------------------------------1.00-------
.........................GAACGCATCTTCTCTAAACGCAGAG.............................................................................................................................2511.001.00--------------------1.00------------------
............................................GCAGAGGTGTGGAGGGTC.................................................................................................................181.000.00-----------------------------1.00---------
...................................................TGTGGAGGGAATGGGGGCT.........................................................................................................1911.001.00---------1.00-----------------------------
................................................................................................................................AGGACTTCCTGAGGGCTTCG...........................2011.001.00--1.00------------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCACAC....................................................201.000.00-1.00-------------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCA...................................................2111.001.00-----1.00---------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCC.....................................................1911.001.00-----1.00---------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCC....................................................2011.001.00-1.00-------------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCAGA.................................................2311.008.00-1.00-------------------------------------
.......................................................................................................TAAGCTCCCCCTTTTCTCCCAGC.................................................2311.008.00-----------------------------------1.00---
..................................................GTGTGGAGGGAATGGGGGCT.........................................................................................................2011.001.00---------1.00-----------------------------
..................................TTCTCTAAACGCAGAG.............................................................................................................................1621.001.00----1.00----------------------------------
...................................................TGTGGAGGGAATGGGGGCTATAA.....................................................................................................2311.002.00--1.00------------------------------------
.............................................................................................................CCCCCTTTTCTCCCAGAC................................................181.000.00-------------------------1.00-------------
................................................................................................................................AGGACTTCCTGAGGGCTT.............................1830.670.67------0.67--------------------------------
...........GGCTGCAGAGGCAGGAAC..................................................................................................................................................1820.500.50------------------------------------0.50--
...........................................................................TGAGGGAGCAGGGCTGGGGT................................................................................2020.500.50-------------------------------------0.50-

Antisense strand
GAGGCGGCCCCGGCTGCAGAGGCAGGAACGCATCTTCTCTAAACGCAGAGGTGTGGAGGGAATGGGGGCTATGTGTGAGGGAGCAGGGCTGGGGTCCCGGGACTAAGCTCCCCCTTTTCTCCCAGGCCAGGACTTCCTGAGGGCTTCGCAGATGAACCTCGGCATGGCGGCCTGG
...................................................((.((((..((.(((((.....(((......))).((((..((((....)))).)))))))))))..))))))...................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189786SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189783SRR189784GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR343334DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................AGGGCTTCGCAGATGGC................... 171.000.00---------------------1.00-----------------
......................................................................................................................CTCCCAGGCCAGGACTT........................................ 1730.330.33------------------0.33--------------------
............................................................................GAGGGAGCAGGGCTGGGG................................................................................. 1860.170.17-------------------0.17-------------------
........................................................................................................................CCCAGGCCAGGACTTC....................................... 1680.120.12--------------------------------------0.12