ID: uc003ykr.57
GENE: UBR5(57)
chr8:103424201-103424450-


(2)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(7)
B-CELL
(5)
BRAIN
(31)
BREAST
(49)
CELL-LINE
(12)
CERVIX
(6)
HEART
(6)
HELA
(5)
LIVER
(2)
OTHER
(2)
RRP40.ip
(38)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CATTTCGTGGTTCACCCGCTGCCGGGCACCGAGGACCAGCTCAATGACAGGTAATAGGGCTGGCGGGTCGGCGGGCGCGGGGGGAGGGGCGCCCTTCCCTCCCTCCCCTCCCCCACGGGCCGTGCCGGGCGGGTGCGGGTGTTTACGCGCCGGCCGGCCAGCTGGGGTGGGGTGCGGGGGTCCTTACTGCCTCCTGCTAGGCTCCTTCCGGGGCAAACTTCTCATCCCGGGGGCAGGGGGCCGCGGGGGG
............................................................................................................(((((((..(((((.((((((((...((....))...))).))))))))))...))))).))................................................................................
............................................................................................................109............................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR029125(GSM416754)
U2OS. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189786SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM532874(GSM532874)
G699T. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR038857(GSM458540)
D20. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR343336SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR029126(GSM416755)
143B. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
GSM532871(GSM532871)
G652N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040039(GSM532924)
G531T. (cervix)
GSM532879(GSM532879)
G659N. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR191514(GSM715624)
165genomic small RNA (size selected RNA from . (breast)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040040(GSM532925)
G612N. (cervix)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
GSM339994(GSM339994)
hues6. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR191512(GSM715622)
163genomic small RNA (size selected RNA from . (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR040024(GSM532909)
G613N. (cervix)
TAX577453(Rovira)
total RNA. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR038856(GSM458539)
D11. (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR189782TAX577745(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR189785SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR189787SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR343334
..................................................................GTCGGCGGGCGCGGGGGCGG....................................................................................................................................................................20119.003.00-1.003.00-3.00----3.00-----------------------------------------1.00-------1.00-1.00--1.00-----------1.00---------1.00------1.00---1.00----------------1.00-------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCG...........................................................................................................................19112.0012.00-------1.00---1.00---------1.001.001.00---1.00--1.00--------1.00----------1.00---1.00-----------------------------1.00-----------------1.00-------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGG.........................................................................................................................21112.0012.004.001.00-------1.00-1.00--1.00---------------------------------1.00---------------------------------------------------------------------------------1.00-------1.00----------1.00--------------------
............................................................................................................TCCCCCACGGGCCGTGCCGG..........................................................................................................................20112.0012.00-------------1.00--------1.00-----1.00------------1.00-----------------------1.00------------------------------1.00----------1.00---------1.00--------------1.00------1.00--1.001.00--------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGT......................................................................................................................24111.008.004.001.00------1.00-----1.00---------1.00--------------------------------------------------------1.00-------------------------------------------1.00------------------1.00-------------------------
......................................................................................................................................GCGGGTGTTTACGCGATGT.................................................................................................1911.000.00---2.00-3.00------3.00----1.00------------------------------------------------------1.00----------1.00--------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGC........................................................................................................................2218.008.00-1.00--1.00---1.00----1.00-----------------1.00--------1.00----------------------------------------------------------------------------------1.00------------1.00---------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCG.......................................................................................................................2318.008.00--------1.00-------------------1.00-------1.00---1.00--------------------------------------------1.00----1.00------------------1.00-1.00----------------------------------------------------------
..................CTGCCGGGCACCGAGGACCAGC..................................................................................................................................................................................................................2216.006.00------6.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCAT......................................................................................................................2415.008.001.00----1.00-------------------1.00-------------------1.00----------------------------------------------------------------------------1.00-----------------------------------------------
..................................................................GTCGGCGGGCGCGGGGGCG.....................................................................................................................................................................1915.003.00-1.001.00------------------------1.00------------------------------1.00-------------------------------------------------------------------1.00-------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGA........................................................................................................................2214.0012.00------------------3.00---1.00---------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................GCGGGTGTTTACGCGAT...................................................................................................174.000.00---3.00-------------------------------------------------------------------------------------------------------------1.00--------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGA.........................................................................................................................2113.0012.00--------------------------------------------------1.00--------------------------------------1.00--------------------1.00-----------------------------------------------------------
..................................................................GTCGGCGGGCGCGGGGG.......................................................................................................................................................................1713.003.00--------------------------1.00------------------------------------------------------------1.00----1.00-----------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGGGA....................................................................................................................2613.001.00-1.00----------------------2.00-------------------------------------------------------------------------------------------------------------------------------------------------
...............................AGGACCAGCTCAATGACAGG.......................................................................................................................................................................................................2013.003.00-------------------------1.00----------------------------------1.00--------------------------------------------------------------------------------------1.00----------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGTGG................................................................................2113.003.00--------------------1.00----------------------1.00---------------------------------------------------------1.00--------------------------------------------------------------------
........................................................................................................................................................................................................................................GCAGGGGGCCGCGGGT..163.000.00--------------------------------2.00-----------------------------------------------------------------------------------------------------------------1.00-----------------------
..................................................................GTCGGCGGGCGCGGGGGCGGT...................................................................................................................................................................2113.003.00--2.00-------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGTT.....................................................................................................................2513.008.00-----1.00---------------1.00---------1.00------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCA.......................................................................................................................2312.008.00--------2.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGTT........................................................................................................................2212.0012.00---------------1.00--------------------------------------------------1.00-------------------------------------------------------------------------------------------------------
..................CTGCCGGGCACCGAGGAC......................................................................................................................................................................................................................1812.002.00----------------------------------------------------2.00---------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGGGTGCGGGTGTTTACGCGCCGGCCGGCCAGCTGGGGTGG................................................................................6212.002.00-----------------------------------------------------2.00--------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCT.......................................................................................................................2312.008.00-----------1.00---------------------------------1.00----------------------------------------------------------------------------------------------------------------------------
...............................AGGACCAGCTCAATGACAGGTA.....................................................................................................................................................................................................2212.002.00------------------------------------------------------------------------------------------------------------------------1.00------------------------------1.00------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGTGGGT..............................................................................232.000.00----------------------------------------------------------------------------------------------------------------------1.00--1.00------------------------------------------------
......................CGGGCACCGAGGACCAGCTCAATGACAG........................................................................................................................................................................................................2812.002.00-------------------1.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CGCCGGCCGGCCAGCTGGGGTGT................................................................................232.000.002.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................GTCGGCGGGCGCGGGG........................................................................................................................................................................1631.331.33--------------------------------------------------------0.33-----------------------------------------------------------------------------------------------0.670.33----------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGTGTT...............................................................................221.000.00------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGT..................................................................................1911.001.00------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCAT..........................................................................................................................2011.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................TGGGGTGGGGTGCGGGGGGATG..................................................................221.000.00------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CCCCACGGGCCGTGCCGGGC........................................................................................................................2011.001.00--------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGGTC....................................................................................................................261.000.00----------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGTGGACA.............................................................................2411.003.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................GCGGGTGTTTACGCGCC...................................................................................................1711.001.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................ACCGAGGACCAGCTCAATGACAG........................................................................................................................................................................................................2311.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................CGGCGGGCGCGGGGGTTGG...................................................................................................................................................................191.000.00----------------------------------------------------------------------------------------------------------1.00---------------------------------------------------------------
................CGCTGCCGGGCACCGAGGACCAGCTCAATGACAG........................................................................................................................................................................................................3411.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................GGCGGGTGCGGGTGTGGT.........................................................................................................181.000.00-----------------------------------------------------------------------------1.00--------------------------------------------------------------------------------------------
...........................ACCGAGGACCAGCTCAATGACAGG.......................................................................................................................................................................................................2411.001.00--------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................TCGGCGGGCGCGGGGGGGGGT..................................................................................................................................................................211.000.00--------------------------------------------------------------------------------------------------------1.00-----------------------------------------------------------------
..................................................GTAATAGGGCTGGCGGGT......................................................................................................................................................................................1811.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------
...................TGCCGGGCACCGAGGACCAGCTCAATGACAG........................................................................................................................................................................................................3111.001.00----1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGAAA...........................................................................................................................191.000.00---------------------------------------------------------------------------------------------------------1.00----------------------------------------------------------------
.............ACCCGCTGCCGGGCACCGAGGACCAGCTCAACG............................................................................................................................................................................................................331.000.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
...............................AGGACCAGCTCAATGACAG........................................................................................................................................................................................................1911.001.00--------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CGCCGGCCGGCCAGCTGGGGTGG................................................................................2311.001.00-----------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------
.................GCTGCCGGGCACCGAGGACCAGCC.................................................................................................................................................................................................................241.000.00-----1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGTGGTT..............................................................................2311.003.00-------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................ATAGGGCTGGCGGGTCGGC..................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGTAT....................................................................................................................2611.008.00-------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGCT.....................................................................................................................2511.008.00----------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGTGGA...............................................................................2211.003.00---------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................GCGGGTCGGCGGGCGAGA..........................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------1.00---------------------------------------------------------------------
..............................................ACAGGTAATAGGGCTGGCGGG.......................................................................................................................................................................................2111.001.00----------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
...............................AGGACCAGCTCAATGACAGGTT.....................................................................................................................................................................................................221.000.00---------------------------------------------------------------------1.00----------------------------------------------------------------------------------------------------
....................................................................CGGCGGGCGCGGGGGGTA....................................................................................................................................................................181.000.00--------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------
..............................GAGGACCAGCTCAATGACAGGTA.....................................................................................................................................................................................................2311.001.00---------------------------------------------------------------------------------------------------------------------------------------1.00----------------------------------
.............ACCCGCTGCCGGGCACCGAGG........................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------------------------------------------------------------1.00------------------------
..................................................................................................................................GGGTGCGGGTGTTTACG.......................................................................................................1711.001.00-------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CGGGGCAAACTTCTCTTCA.......................191.000.00--------------------------------------------------------------------------------1.00-----------------------------------------------------------------------------------------
.....................................AGCTCAATGACAGGTAATAGGG...............................................................................................................................................................................................2211.001.00-------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGAAT.......................................................................................................................2311.0012.00--------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................TGGGGTGGGGTGCGGGGGGAT...................................................................211.000.00------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGGCTT...................................................................................................................271.000.00----------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGTAA....................................................................................................................2611.008.00---------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGTGGTA..............................................................................2311.003.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGTGGT...............................................................................2211.003.00----------------------------------------------------------------------------------1.00---------------------------------------------------------------------------------------
..............................................................................................................CCCCACGGGCCGTGCCGG..........................................................................................................................1811.001.00-----------------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------
................................................................................................................CCACGGGCCGTGCCGGGCGGG.....................................................................................................................2111.001.00-----------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGGGT....................................................................................................................2611.001.00----------------------------------------------------------------------------------------------------------------------------------------------------1.00---------------------
..................................................................GTCGGCGGGCGCGGGGGC......................................................................................................................................................................1811.003.00-------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------
........................................................................GGGCGCGGGGGGAGGGA.................................................................................................................................................................171.000.00-----------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGTT.......................................................................................................................2311.0012.00--------------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------------
...........................................................................CGCGGGGGGAGGGGCGCCCC...........................................................................................................................................................201.000.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTCCCCCACGGGCCGTGCCGGGCGTT.....................................................................................................................261.000.00----------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
..............................GAGGACCAGCTCAATGACAGGTAATAGGG...............................................................................................................................................................................................2911.001.00-------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGC.............................................................................................................................1711.001.00----1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................GCTGCCGGGCACCGAGG........................................................................................................................................................................................................................1711.001.00-------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.............................................................................CGGGGGGAGGGGCGCCGCCG.........................................................................................................................................................201.000.00-------------------------------------------------------------------------------------------------------------------------------1.00------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCTT......................................................................................................................2411.008.00-------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ATCCCGGGGGCAGGGGGCT........191.000.00-------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGTTT....................................................................................................................2611.008.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................GCCAGCTGGGGTGGGGCG............................................................................181.000.00-------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCC............................................................................................................................1811.001.00----------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGGGTGGGGTGCGGGGGTGG...................................................................201.000.00-------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................CGGCGGGCGCGGGGGTTG....................................................................................................................................................................181.000.00---------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GGGTGGGGTGCGGGGGAG....................................................................181.000.00-------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------
..........TTCACCCGCTGCCGGGCACCGAGG........................................................................................................................................................................................................................2411.001.00----------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................GCGGGTGTTTACGCGATCC.................................................................................................191.000.00------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................GGGCGCGGGGGGAGGCGAA...............................................................................................................................................................191.000.00---------------------------------------------------------------------------1.00----------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGGG.....................................................................................................................2511.001.00-----------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGTA........................................................................................................................2211.0012.001.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................GGCGGGTGCGGGTGTGGGG........................................................................................................191.000.00-----------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------
...................................................TAATAGGGCTGGCGGGTC.....................................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------------------------------------------1.00--------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCTATT....................................................................................................................2611.008.00-------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................TCGGCGGGCGCGGGGGGGG....................................................................................................................................................................191.000.00-------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.............ACCCGCTGCCGGGCACCGAG.........................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------------------
................................................AGGTAATAGGGCTGGCGG........................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------------------------------------------1.00---------------------------------------------------------
..................................................................GTCGGCGGGCGCGGGGGGGG....................................................................................................................................................................201.000.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................GTCGGCGGGCGCGGGGGCGGG...................................................................................................................................................................2111.003.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCATT.....................................................................................................................2511.008.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
..............................GAGGACCAGCTCAATGACAGGTAATA..................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------------------------------------1.00----------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGTC.....................................................................................................................2511.008.00----------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................GGCGGGTGCGGGTGTGGG.........................................................................................................181.000.00------------------------------------------------------------------------------------------------------------1.00-------------------------------------------------------------
.................GCTGCCGGGCACCGAGGACC.....................................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------------------------------------------------------------------1.00----------------------------------------
....................................................................................................................................................GCCGGCCGGCCAGCTGGGGTGGT...............................................................................231.000.00---------------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................TGGGGTGGGGTGCGGGGGTAGT..................................................................221.000.00--------------------------------------------------------------------------------------------------------------------1.00-----------------------------------------------------
..................................................................GTCGGCGGGCGCGGGGCG......................................................................................................................................................................1831.001.33-------0.33-0.33----------------0.33-----------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGCGGT...............................................................................221.000.00-------------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGAG........................................................................................................................2211.0012.00---------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGAAT......................................................................................................................2411.0012.00-----------------------------------------------------------------------------------------------1.00--------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTCCCG...........................................................................................................................191.000.00--------------------------------------------------------------------------------------------------1.00-----------------------------------------------------------------------
.................................................................GGTCGGCGGGCGCGGGGCGGG....................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------------------------------------------------------1.00--------------------------------
.................................................................GGTCGGCGGGCGCGGGG........................................................................................................................................................................1711.001.00---------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGAT........................................................................................................................2211.0012.00---------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------
................................................AGGTAATAGGGCTGGCGGGT......................................................................................................................................................................................2011.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
......................CGGGCACCGAGGACCAGCTCAATGACAGGT......................................................................................................................................................................................................3011.001.00---------------------------------------------------------------------------------------------------------------------------------------------1.00----------------------------
............................................................................................................TCCCCCACGGGCCGTAGA............................................................................................................................181.000.00-------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------
...........................................................................................................CTCCCCCACGGGCCGTGCCGGG.........................................................................................................................2211.001.00----------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCGTGCCGGGCGTATT...................................................................................................................2711.008.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
..........................................AATGACAGGTAATAGGGCTG............................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------------------------------------------------1.00--------------------------------------------------
...........................................................................................................CTCCCCCACGGGCCGTGCCGGGA........................................................................................................................2311.001.00----------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
...............................AGGACCAGCTCAATGACAGGTTAC...................................................................................................................................................................................................241.000.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................CGGGCGGGTGCGGGTGTTTACG.......................................................................................................2211.001.00------------------------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
..............................................................GCGGGTCGGCGGGC..............................................................................................................................................................................1470.860.86------------------------------------------------------------0.14----------------------------------------------------------------------------------------------------0.29----0.140.140.14-
..................................................................GTCGGCGGGCGCGGGGC.......................................................................................................................................................................1730.671.33---------------------------------------------------------------------------------------------------------------------------------------------------------0.33------0.33---------
...................................................................TCGGCGGGCGCGGGGG.......................................................................................................................................................................1620.500.50-------------------------------------------------------0.50------------------------------------------------------------------------------------------------------------------
....................................................................................................CCCTCCCCTCCCCCACGG....................................................................................................................................1820.500.50----------------------------------------------------------------------------------------------------------------------------------------------------------0.50---------------
...................................................................TCGGCGGGCGCGGGGGCGGT...................................................................................................................................................................2020.500.50---0.50----------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................CGGGCGCGGGGGGAGG...................................................................................................................................................................1670.430.43-0.290.14-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................GCGGGTGTTTACG.......................................................................................................1330.330.33------------------------------------------------------------------------------------------------------------------------------------------------------------0.33-------------
..................................................................GTCGGCGGGCGCGGGGCGTG....................................................................................................................................................................2030.331.33-------------------------------------------------------------------------------------------------------------------------------------------------------------0.33------------
..................................................................GTCGGCGGGCGCGGGGCGG.....................................................................................................................................................................1930.331.33--------------------------0.33-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................GTCGGCGGGCGCGGGGCCGA....................................................................................................................................................................2030.331.33-0.33------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................GTCGGCGGGCGCGGGGCGGG....................................................................................................................................................................2030.331.33---------------------------------------------------------------------------------------------------------------------------------------------------------------0.33----------
..................................................................GTCGGCGGGCGCGGG.........................................................................................................................................................................1560.330.33-------------------------------------------------------------------------------------------------------------------------------------------------------------------0.170.17-----
.............................................................GGCGGGTCGGCGGGC..............................................................................................................................................................................1530.330.33-----------------------------------------------------------------------------------------------------------------------------------------------------------0.33--------------
.........................................................................................CGCCCTTCCCTCCCTCCC...............................................................................................................................................1860.170.17-----------------------------------------------------------0.17--------------------------------------------------------------------------------------------------------------
................................................................GGGTCGGCGGGCGC............................................................................................................................................................................14100.100.10-------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.10

Antisense strand
CATTTCGTGGTTCACCCGCTGCCGGGCACCGAGGACCAGCTCAATGACAGGTAATAGGGCTGGCGGGTCGGCGGGCGCGGGGGGAGGGGCGCCCTTCCCTCCCTCCCCTCCCCCACGGGCCGTGCCGGGCGGGTGCGGGTGTTTACGCGCCGGCCGGCCAGCTGGGGTGGGGTGCGGGGGTCCTTACTGCCTCCTGCTAGGCTCCTTCCGGGGCAAACTTCTCATCCCGGGGGCAGGGGGCCGCGGGGGG
............................................................................................................(((((((..(((((.((((((((...((....))...))).))))))))))...))))).))................................................................................
............................................................................................................109............................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR029125(GSM416754)
U2OS. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189786SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM532874(GSM532874)
G699T. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR038857(GSM458540)
D20. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR343336SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR029126(GSM416755)
143B. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
GSM532871(GSM532871)
G652N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040039(GSM532924)
G531T. (cervix)
GSM532879(GSM532879)
G659N. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR191514(GSM715624)
165genomic small RNA (size selected RNA from . (breast)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040040(GSM532925)
G612N. (cervix)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
GSM339994(GSM339994)
hues6. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR191512(GSM715622)
163genomic small RNA (size selected RNA from . (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR040024(GSM532909)
G613N. (cervix)
TAX577453(Rovira)
total RNA. (breast)
SRR040014(GSM532899)
G623N. (cervix)
SRR038856(GSM458539)
D11. (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR189782TAX577745(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR189785SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR189787SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR343334
.......TGGTTCACCCGCTGCCG.................................................................................................................................................................................................................................. 1711.001.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................GGCGGGTCGGCGGGCGCGGTG........................................................................................................................................................................ 211.000.00------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------
................................................................................................................................................ACGCGCCGGCCGGCCAGCTGGGGTTAT............................................................................... 271.000.00-----------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CGGGGGTCCTTACTGCCT.......................................................... 1811.001.00-------------------------------------------------------------------------------------------------------1.00------------------------------------------------------------------
.......................................................................................................................................................................................................................AACTTCTCATCCCGGGGGC................ 1911.001.00--------------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------
..............................GAGGACCAGCTCAATGCGG......................................................................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------------------------------------------------------------1.00------------------------------------
................................................................................................................................................................................GGGGTCCTTACTGCCTCCTG...................................................... 2011.001.00----------------------------------------------------------------------------------------------------------------------------1.00---------------------------------------------
...........................................................................................................................................................................................................................................GGGGGCCGCGGGGGGCGTC 191.000.00----------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
......................................................................................GGGCGCCCTTCCCTCGGGG................................................................................................................................................. 191.000.00------------------------------------------------------------------------------------------------------------------------------------------------------1.00-------------------
........................................................................GGGCGCGGGGGGAGGCCGC............................................................................................................................................................... 191.000.00---------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------
.....................................AGCTCAATGACAGGTAATAGG................................................................................................................................................................................................ 2111.001.00--------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................GTCGGCGGGCGCGGGGGAC..................................................................................................................................................................... 1911.000.00----------------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................CCGGCCGGCCAGCTGGGGGCCG............................................................................... 221.000.00----------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------
.............................................................GGCGGGTCGGCGGGCGG............................................................................................................................................................................ 171.000.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................GCCGGCCAGCTGGGGGC................................................................................. 171.000.00---------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................GGGGGCCGCGGGGGGCGC 181.000.00-------------------------------------------------------------------------------------------------------------------1.00------------------------------------------------------
............................................................................................................................................................................................GCCTCCTGCTAGGCTCCT............................................ 1820.500.50---------------------------0.50----------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCCCCACGGGCCG................................................................................................................................ 1460.330.33--------------------------------------------------------------------------------------------------------------------------------------------------------------0.33-----------
......................................................................GCGGGCGCGGGGGGAGG................................................................................................................................................................... 1740.250.25------------------------------------------------------------------------------------------------------------------------------------------------------------------0.25-------
........................................................................GGGCGCGGGGGGAGGGG................................................................................................................................................................. 1760.170.17---------------------------------------------------------0.17----------------------------------------------------------------------------------------------------------------
..........................CACCGAGGACCAGCT................................................................................................................................................................................................................. 1560.170.17----------------------------------------------------------0.17---------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................CGGGGCAAACTTCT............................ 1460.170.17--------------0.17-----------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................GGGCGCGGGGGGAGGGGCCGC............................................................................................................................................................. 210.170.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------0.17----
.............................................................................................................................................................CCAGCTGGGGTGGGGTG............................................................................ 1780.120.12-------------------------------------------------------------0.12------------------------------------------------------------------------------------------------------------