ID: uc003ykr.35
GENE: UBR5(35)
chr8:103311726-103312277-


(3)
AGO2.ip 		(1)
B-CELL 		(6)
BREAST 		(19)
CELL-LINE 		(1)
CERVIX 		(5)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(16)
SKIN 		(1)
XRN.ip

Sense strand
CCCCATAGCTCCCCCTAGTTGGGTTCCTGACCCTCCTGCGATGGATCCTGGTAAGAGCTGTTATTTAATTTCATTTAGTGTTTAACAAAAAGAGCAGGTCATGAAAGGAAATAATTTTAACATTTTAAAGGGATATTTAGAAATTTGAAATATTTGAAAGTAGTATGATGAATATTATAACTAGTTTAGCTATAAAAATTAGATTTAAGGGATTTATATTTTAAAAATTAAAATTCCAGAACTCTTGTCAGGTATTCCACTTTTACTGAAATATTTATTTCTATACCAGTAAGAATAATCCCTTTATTAGTAATATATCAAGATAAGTCAATAGATTTGCCTAGTGGATTCCTTCTCTTGTAGTTTGGAAAAGAAGTTTCACTTAAACTCTATCCAATTTGACCTTTGGCTTGCAGAGAAAAGCCTTAAGGCCAGTTAAGAGAACATGTTAGGAATATGTTGCCTATAATGATATACATCCTACTGTTCTGTTTACTGAAAGATGGTGACATTGATTTTATCCTGGCCCCCGCTGTGGGATCTCTTACCACA
................................................................................................................................................................................................................................................................................................................................................................................................................................................((((.((.((((((.((.((((.((((((.........))))))..)))))))))))).)).))))......................................................
.........................................................................................................................................................................................................................................................................................................................................................................................................................................426.........................................................................502................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189785SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTAAGAGAACATGTTAGG...................................................................................................23129.0029.00-11.00-6.001.001.001.001.002.00--------1.00-1.001.00------1.001.00-------1.00---------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTTCTGTTTACTGA.....................................................18115.0015.0013.00---------------2.00-----------------------------------------
.....................................GCGATGGATCCTGGTAAGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.008.00--8.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTTCTGTTTACTGAAAG..................................................2115.005.00---------3.00-----------------------1.00-----------------1.00------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTAAGAGAACATGTTAGG...................................................................................................2214.004.00-----1.00-------2.00------1.00-------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTAAGAGAACATGTTAGGA..................................................................................................2413.003.00--------------2.00----------------------------------1.00--------
.............................ACCCTCCTGCGATGGATCCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003.00------------3.00---------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTAAGAGAACATGTTAG....................................................................................................2212.002.00------1.00----------1.00----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTTCTGTTTACTGAAAGT.................................................2212.005.00------------------1.00-------------1.00-------------------------
....................................................................................................................................................................................................................................................................................................................AGTAATATATCAAGATAAGTCAAT............................................................................................................................................................................................................................2411.001.00-------1.00--------------------------------------------------
.......GCTCCCCCTAGTTGGGTTCCTGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------------1.00------------
............................................................................................................................TTAAAGGGATATTTAGAAATTTGAAATA................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-------------------------------1.00--------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAGTTAAGAGAACATGTTAGGAATA...............................................................................................2911.001.00---------------------1.00------------------------------------
..........................................................................................................................................................................................................................................................................................................................................ATAGATTTGCCTAGTGG.............................................................................................................................................................................................................1711.001.00------------------------------1.00---------------------------
...................................................................................................................................................................................................................................................................................................................................TAAGTCAATAGATTTGTTAG.................................................................................................................................................................................................................201.000.00-----------1.00----------------------------------------------
.................................................................................................................................GGGATATTTAGAAATTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------------1.00---------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCTGTGGGATCTCTTAC....2011.001.00-------------------------------------------1.00--------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTAAGAGAACATGCTAG....................................................................................................211.000.00----------1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATTTTATCCTGGCCCCCGCTGTGGGAT...........3111.001.00----1.00-----------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................CAATTTGACCTTTGGCTTGCA.........................................................................................................................................2111.001.00-------------------------1.00--------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTAAGAGAACATGTTAGT...................................................................................................2311.002.00----1.00-----------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................TTGACCTTTGGCTTGCAGAGAAAAG.................................................................................................................................2511.001.00----------------------------------------------------1.00-----
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTAAGAGAACATGTTCGG...................................................................................................231.000.00-1.00--------------------------------------------------------
..............................................................................................................................................................................................................................................GAACTCTTGTCAGGTATTCCACTT..................................................................................................................................................................................................................................................................................................2411.001.00-------1.00--------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................AATTTGACCTTTGGCTTGCAG........................................................................................................................................2111.001.00-----1.00----------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTACTGTTCTGTTTACTGAAAGATGGTG............................................2911.001.00------------------1.00---------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCCCCGCTGTGGGA............1711.001.00------------------------------------------------1.00---------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCTACTGTTCTGTTTACTGAAAG..................................................2711.001.00--------------------------------------------1.00-------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTAAGAGAACATGTTAGGAT.................................................................................................2511.003.00----------------------1.00-----------------------------------
.......................................GATGGATCCTGGTAAGAGCTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------------------------1.00---------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTTCTGTTTACTGAAAGA.................................................2211.001.00------1.00---------------------------------------------------
............................................................................................................................................................................................................................................CAGAACTCTTGTCAGGTATTCCACTTTTAC..............................................................................................................................................................................................................................................................................................3011.001.00----------------------------------------1.00-----------------
.....................................................................................................................................................................................................................................................................................................................................................................TTGTAGTTTGGAAAAGAAGTTTCAC..........................................................................................................................................................................2511.001.00-----------------------------------------------1.00----------
.........................................TGGATCCTGGTAAGAGCTGTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------1.00----------------------------
...........CCCCTAGTTGGGTTCCTGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------1.00----------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTTGGCTTGCAGAGAAAAGCC...............................................................................................................................2511.001.00--------1.00-------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTAAGAGAACATGTTAG....................................................................................................2111.001.00-----------1.00----------------------------------------------
.....................................................................................................................................................................................TAGTTTAGCTATAAAAATTAGATTTAAGG......................................................................................................................................................................................................................................................................................................................................................2911.001.00-------------------------------------1.00--------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTTAAGAGAACATGTTAGGAA.................................................................................................2511.001.00----------------------------------------------1.00-----------
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTAAGAGAACATGTTAGGAT.................................................................................................231.000.00--------------------------------------------------1.00-------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTACTGTTCTGTTTACTGA.....................................................2211.001.00-------------------1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTACTGAAAGATGG..............................................1820.500.50---------------------0.50------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTACTGAAAGATGG..............................................1720.500.50-----------------------------------------------------0.50----
.......................................................AGCTGTTATTTAATTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.330.33------------------------------------------------------0.33---
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTTACTGAAAG..................................................1730.330.33----------------------0.33-----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGGAATATGTTG..........................................................................................1570.140.14--------------------------------------------------------0.14-

Antisense strand
CCCCATAGCTCCCCCTAGTTGGGTTCCTGACCCTCCTGCGATGGATCCTGGTAAGAGCTGTTATTTAATTTCATTTAGTGTTTAACAAAAAGAGCAGGTCATGAAAGGAAATAATTTTAACATTTTAAAGGGATATTTAGAAATTTGAAATATTTGAAAGTAGTATGATGAATATTATAACTAGTTTAGCTATAAAAATTAGATTTAAGGGATTTATATTTTAAAAATTAAAATTCCAGAACTCTTGTCAGGTATTCCACTTTTACTGAAATATTTATTTCTATACCAGTAAGAATAATCCCTTTATTAGTAATATATCAAGATAAGTCAATAGATTTGCCTAGTGGATTCCTTCTCTTGTAGTTTGGAAAAGAAGTTTCACTTAAACTCTATCCAATTTGACCTTTGGCTTGCAGAGAAAAGCCTTAAGGCCAGTTAAGAGAACATGTTAGGAATATGTTGCCTATAATGATATACATCCTACTGTTCTGTTTACTGAAAGATGGTGACATTGATTTTATCCTGGCCCCCGCTGTGGGATCTCTTACCACA
................................................................................................................................................................................................................................................................................................................................................................................................................................................((((.((.((((((.((.((((.((((((.........))))))..)))))))))))).)).))))......................................................
.........................................................................................................................................................................................................................................................................................................................................................................................................................................426.........................................................................502................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189785SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
........................................................................................................................................................TTTGAAAGTAGTATGATAG............................................................................................................................................................................................................................................................................................................................................................................................. 194.000.00----------1.00----2.00----------------------1.00-------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTTGCAGAGAACTG................................................................................................................................. 191.000.00-----------1.00----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACATCCTACTGTTGAT............................................................. 201.000.00----------------------------------1.00-----------------------
............................................................................................................................TTAAAGGGATATTTAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00-----------------------------------1.00----------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTACTGAAAGATC............................................... 171.000.00---------------------------------------1.00------------------
...................................................................................................................................................................................................................................................................................................................................................................TCTTGTAGTTTGGAAATGA.................................................................................................................................................................................. 191.000.00--------------------------1.00-------------------------------
.........................................................................................................AGGAAATAATTTTAACACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00----------1.00-----------------------------------------------
................................................................................................................................................................................................TAAAAATTAGATTTACAGA..................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------1.00----------------
...................................................................................................................................................................................................................................................................................................AGAATAATCCCTTTAT..................................................................................................................................................................................................................................................... 1650.200.20-------------------------------------------------------0.20--
.......................................................................................................................................................................................................TAGATTTAAGGGATT.................................................................................................................................................................................................................................................................................................................................................. 1580.120.12---------------------------------------------------------0.12