ID: uc003upz.5
GENE: ARPC1B(5)
chr7:98988673-98988850+


(1)
AGO1.ip 		(4)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(15)
BREAST 		(48)
CELL-LINE 		(2)
CERVIX 		(3)
FIBROBLAST 		(3)
HEART 		(8)
HELA 		(8)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(35)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTAAGCCACGACAGCACCGTCTGCCTGGCTGATGCCGACAAGAAGATGGCGTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAGCGTCGCGACTCTGGCCTCTGAAACACTACCACTGCTGGCGCTGACCTTCA
......................................................................((((.(((((.((((...(((..((((....))))..)))...)))))))))))))....................................................
..............................................................63...............................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR189787SRR038860(GSM458543)
MM426. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189784SRR189783SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029127(GSM416756)
A549. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		TAX577740(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR038858(GSM458541)
MEL202. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029126(GSM416755)
143B. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
...................................................................CCAGGGGAGGAGGTGAGTGCAG.........................................................................................22128.0028.005.003.008.00--1.00--1.00---2.00-1.00-1.00---------1.00------1.00-----------1.00-1.00-------------------------------------1.00--1.00--------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAG.........................................................................................21117.0017.00-1.00--------------1.00--1.001.00-1.00-----1.00-----1.00----1.00--1.00-----1.00--1.00-1.00---1.00----------1.00-------------------------------------------1.00-1.00-1.00----------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAG..................................................24113.0013.001.00-1.004.00-1.001.00-1.00---1.00-1.00---------------------------------------------------------------------------------------------1.00-----------------------1.00------
..................................................................CCCAGGGGAGGAGGTGAGTGC...........................................................................................21113.0013.008.00-----------------------1.00---1.00--------1.00-----------------1.00------1.00----------------------------------------------------------------------------
..................................................GTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAG..................................................78113.0013.00----12.00-----------------------------------------------------------------------------------------------------------------------------1.00--------
...................................................................CCAGGGGAGGAGGTGAGTGC...........................................................................................20113.0013.002.00-8.00------------2.00---------------------------------------------------------------------------------------------------1.00-----------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGT.................................................25112.0013.00--1.002.00-1.00--------1.00-------------------1.00-1.00------------1.00------------------------------1.00-----1.00-------1.00------1.00-------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCA..........................................................................................21110.0010.00-2.003.00--1.00--------------------1.00-----------------------1.00-1.00---1.00----------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGC...........................................................................................19110.0010.003.00-------2.00------1.00-------1.00---------1.00-------------------------1.00-------------------1.00-----------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGT.................................................21110.003.001.00--1.00-----------------1.00-------2.00-----------------------------------------------------1.00-------------1.00--------1.00-----------1.00-1.00------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGAA................................................288.000.00-8.00-----------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGA........................................................................................2317.007.00----------5.00------------1.00-----------------------------------------------------------------------------------------1.00-------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGT........................................................................................2216.0017.001.001.00-----3.00------------------------------------------------------------------------------------------1.00----------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGA...........................................................................................2016.001.00---------6.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGA.................................................2516.0013.005.00-----------------1.00------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGTAA......................................................................................2415.0017.005.00------------------------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCA..........................................................................................2015.005.00----------------------1.00---1.00----1.00------------1.00--------------------1.00-------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAG.........................................................................................2315.005.00-4.00---------------------------------------------------------------------------------------------------------------------------------1.00-------
........................................................................................................TGACTCACAGCTCTCTCCCCTCA...................................................2314.004.00---2.00-1.00------------------------------------------------------------------------------------1.00------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGA.................................................2114.003.00------1.00----------------------------------1.00-----------1.00---1.00---------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCT.....................................................2314.004.00--------1.00---------1.00----------------------------------------------------------1.00---------------------1.00---------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAG..................................................2314.004.00---2.00------------------------------------------1.00-------1.00------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAT..................................................2613.001.003.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAA.........................................................................................2213.0010.00--2.00-------------------------------------------------1.00--------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCA..........................................................................................2213.003.002.00-------------------------------------------------1.00----------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAG..................................................2513.003.00--------1.00---1.00---------------------------------1.00--------------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCA...................................................2413.003.00---1.00------------------------1.00--------------------------------------------------------------------------1.00-----------------------------------
.........................................................................................AGGAGTGGGACACCGTGACTC....................................................................2113.003.00-------3.00-----------------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAA.........................................................................................2113.005.00--------------------------------------2.00--------------------------------1.00-------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGT........................................................................................2313.0028.00-1.00----1.001.00-----------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAG..................................................2013.003.002.00--1.00---------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGA......2313.003.00-----------3.00-------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................ACTCACAGCTCTCTCCCCTCAGT.................................................233.000.003.00------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAA................................................2612.0013.00---------------------------2.00---------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTC....................................................2212.002.001.00--------------1.00---------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................CACTACCACTGCTGGCGCTGACCT...2412.002.00-----------2.00-------------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGA........................................................................................2212.002.00-1.00---------------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGTA................................................2212.003.00----------------------------------------------------------------------------1.00---------------------------------1.00----------------------------
........................................................................................................TGACTCACAGCTCTCTCCCA......................................................202.000.00------------------------------2.00------------------------------------------------------------------------------------------------------------
.............GCACCGTCTGCCTGGCTGATGCCGAC...........................................................................................................................................2612.002.00-------------------------------------------------------------------------------------------------------------------------1.00-------------1.00---
....................................................................CAGGGGAGGAGGTGAGTGA...........................................................................................192.000.00------------------------2.00------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAATCCA........................192.000.00---------1.00------------------------------------------------------------------------------------------1.00--------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAT.........................................................................................2312.003.00-----------------------------------------------1.00--------------------------------------------------------------------------------1.00----------
....................................................................CAGGGGAGGAGGTGAGTGAA..........................................................................................202.000.00-------------------------------1.00-------------------------------------------1.00---------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCC......................................................2212.002.00-------------------------------------------------------1.00-----------------------------------------------------------------------1.00-----------
...................................................................CCAGGGGAGGAGGTGAGTGCAGTT.......................................................................................2412.0028.00-2.00-----------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAAA......................................................................................2512.007.00-1.00----1.00------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................AAACACTACCACTGCTGGCGCTG.......2312.002.00-----------------1.00--------------------------------------------------------------------------------------------------------------------1.00----
..................................................................................................ACACCGTGACTCACAGACAA............................................................202.000.00-------------------------2.00-----------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGTAT......................................................................................2612.005.00-2.00-----------------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGA........................................................................................2412.002.00-1.00---------------------------------------------------------------------------------------------1.00-------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAT.......................................................................................2312.002.00---------------------------------------1.00------------------1.00--------------------------------------------------------------------------------
.............................TGATGCCGACAAGAAGATGGC................................................................................................................................2111.001.00------------------------------------------------------------------------------------1.00------------------------------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGACCTTCACC311.000.00-------------------------------------------1.00-----------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGA.................................................271.000.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................TCGCGACTCTGGCCTCTGAAACACTAC.....................2711.001.00------------------------------------------------------1.00------------------------------------------------------------------------------------
....................................................................................................................................GCGACTCTGGCCTCTGAA............................1811.001.00--------------------------------------------------------------------------------------------1.00----------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAT..................................................2411.004.00---------------------------------------------------------------------1.00---------------------------------------------------------------------
.................................................................................................................................GTCGCGACTCTGGCC..................................1511.001.00-------------------------------------------------------------------1.00-----------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAA.......................................................................................2411.007.00-------------1.00-----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGAA................................................2711.003.00---------------------------1.00---------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGT........................................................................................2411.005.00--------------------------------------------1.00----------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCCGA.................................................211.000.00----------------------------------------------------------------------------------1.00--------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGAAAG..............................................2411.003.00---------------------------------------------------------------------------------------------------------1.00---------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGTTT......................................................................................2411.0017.00-----------------------------------------------------------------------------------------1.00-------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGTAA...............................................2611.004.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGACCTTC.2811.001.00----------------------------------------------------------1.00--------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCCGGC.....................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------------------------------1.00-------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGCA................................................281.000.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAT.......................................................................................2411.007.00---------------------------------------------------------------------------------------1.00---------------------------------------------------
.................................................................................................................................GTCGCGACTCTGGC...................................1411.001.00------------------------------------------------------------------------------------------------------------------------------1.00------------
............................................................................................................TCACAGCTCTCTCCCCTCATT.................................................211.000.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTGT...................................................2511.004.00--------1.00----------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................CCTCTGAAACACTACCACTGCT..............2211.001.00-------------------------------------------------------------------------1.00-----------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGTAA...............................................2311.003.00-----------------------------------------------------------------------------------------------------------1.00-------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGAA..........................................................................................221.000.00---------------------------------------------------1.00---------------------------------------------------------------------------------------
....................................................................................................................................GCGACTCTGGCCTCTGAAACAC........................2211.001.00---------------------------------------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................CGACTCTGGCCTCTGAAACACTACCACTGCTG.............3211.001.00--------------------------------------------------------------------------------------------------------------------------1.00----------------
..........................................................................................................................................CTGGCCTCTGAAACACTACC....................2011.001.00--------------------------------------------------------------------------------------------------------1.00----------------------------------
............AGCACCGTCTGCCTGGCTGA..................................................................................................................................................2011.001.00------------------------------------------------------------------------1.00------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCC.......................................................2111.001.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................CACTACCACTGCTGGCGCTG.......2011.001.00---------------------------------------------------------------------------------------------------------------------------------1.00---------
..........................................................................................................ACTCACAGCTCTCTCCCCTCAGA.................................................231.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAAT........................................................................................2311.0010.00----------------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGTTC......................................................................................2511.0028.00-------------------1.00-----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGAAACACTACCACTGCTGGCGCTGACC....2811.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGT.................................................2411.004.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
.TAAGCCACGACAGCACCGTCTGCCTGGCTGA..................................................................................................................................................3111.001.00--------------------1.00----------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCC........................................................2011.001.00---------------------------------------------------------------1.00---------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGT.................................................271.000.00------------1.00------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................ACTACCACTGCTGGCGCTG.......1911.001.00------------------------------------------------------------1.00------------------------------------------------------------------------------
.....................................................................................GCAGAGGAGTGGGACACCGTGAC......................................................................2311.001.00------------------------------------------------------------------------------1.00------------------------------------------------------------
...................................................................................................................................CGCGACTCTGGCCTC................................1511.001.00-----------------------------------------------------------------------------------------------------------------------------1.00-------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCCG..................................................2411.002.00---------------------------------------------------------------------------------------------1.00---------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGATAG..............................................2911.003.00------------------------------------------------------------------------------------------------1.00------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCT...................................................2311.002.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CTGAAACACTACCACTGCTGG............2111.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAATT.......................................................................................2311.005.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
..........................................................................AGGAGGTGAGTGCAGAGACG....................................................................................201.000.00-----------------------------------1.00-------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCGA.....................................................2311.001.00------------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGT...........................................................................................2011.001.00------------------------------------------------------------------1.00------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAAAT.......................................................................................2411.0010.00-------------------------------------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTC....................................................2411.001.00-------------------1.00-----------------------------------------------------------------------------------------------------------------------
..............................GATGCCGACAAGAAGATG..................................................................................................................................1811.001.00--------------------------------------------------------1.00----------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAACCC.........................181.000.00-------------------------1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTTT...................................................2511.004.00----------------------------------------1.00--------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTT....................................................2411.004.00----------------------------------------------------------------1.00--------------------------------------------------------------------------
......CACGACAGCACCGTCTGCCTGGC.....................................................................................................................................................2311.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAT................................................2611.0013.00---------------------------------------------------------------------------------------------------------------------------1.00---------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAAA......................................................................................2411.002.00-------------1.00-----------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCCT..................................................2611.001.00------1.00------------------------------------------------------------------------------------------------------------------------------------
...................................................................................GTGCAGAGGAGTGGGACA.............................................................................1811.001.00-------------------------------------------------------------------------------------------------------------------------------------1.00-----
..................................................................CCCAGGGGAGGAGGTGAGTGCAATA.......................................................................................2511.003.00---------------------1.00---------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAA..................................................2611.001.00--------------------------------1.00----------------------------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAT..................................................2511.003.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
..............................GATGCCGACAAGAAGCTCA.................................................................................................................................191.000.00------------------------------------------1.00------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAG.......................................................................................2311.001.00-------------1.00-----------------------------------------------------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCTGGCTGATG................................................................................................................................................2411.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................CTACCACTGCTGGCGCTGACCTTC.2411.001.00--------------------1.00----------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTG............................................................................................1911.001.00------------------------------------------------1.00------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCGCAG..................................................201.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
...AGCCACGACAGCACCGTCTGC..........................................................................................................................................................2111.001.00---------------------------------------------------------------------------------------------------------------------1.00---------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCA...................................................2511.001.00------------------------------------------------------------------------------------------------------1.00------------------------------------
..............................GATGCCGACAAGAAGATGGCC...............................................................................................................................211.000.00---------------------------------------------------------------------------------1.00---------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAGA...............................................2711.0013.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
.....................................................................AGGGGAGGAGGTGAGTGCAG.........................................................................................2011.001.00-------------------------------------------------------------------------------------------------------------1.00-----------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGA.................................................2611.003.00------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAAC........................................................................................2411.003.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCGG....................................................2411.002.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCTGGCTGA..................................................................................................................................................2211.001.00------------------------------------1.00------------------------------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAATCC.........................181.000.00----------------------------------------------------------------------1.00--------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCCG.........................................................................................2211.0013.00---------------------------------------------------------------------------------------------------------------1.00---------------------------
................................................................................................................................................TCTGAAACACTACCACTGCTGGC...........2311.001.00-------------------------------------------------------------1.00-----------------------------------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGATA...............................................2611.004.00--------------------------------------------------------------------------1.00----------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCATTA................................................2611.004.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGTT.......................................................................................2511.005.00------1.00------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCT...................................................2511.001.00----------------------------------------1.00--------------------------------------------------------------------------------------------------
............AGCACCGTCTGCCTGGCTGATGCCGATA..........................................................................................................................................281.000.00--------------------------------1.00----------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAGGA.....................................................................................2511.001.00-------------------------------------------------------------------------------------------1.00-----------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAAA........................................................................................2411.003.00-------------1.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................CGCGACTCTGGCC..................................1330.670.67----------------------------------------------------------------------------------------------------------------------------------------0.330.33-
....................................................................CAGGGGAGGAGGTGAGT.............................................................................................1720.500.50--0.50----------------------------------------------------------------------------------------------------------------------------------------
.............................................................CCATCCCCAGGGGAGG.....................................................................................................1640.250.25------------------------------------------------------------------------------------------------------------------------------------------0.25
............................................................................................................TCACAGCTCTCTCCCCT.....................................................1740.250.25-----------------------------0.25-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GAAACACTACCACTG................1550.200.20------------------------------------------------------------0.20------------------------------------------------------------------------------

Antisense strand
GTAAGCCACGACAGCACCGTCTGCCTGGCTGATGCCGACAAGAAGATGGCGTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAGCGTCGCGACTCTGGCCTCTGAAACACTACCACTGCTGGCGCTGACCTTCA
......................................................................((((.(((((.((((...(((..((((....))))..)))...)))))))))))))....................................................
..............................................................63...............................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR189787SRR038860(GSM458543)
MM426. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189784SRR189783SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029127(GSM416756)
A549. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		TAX577740(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR038858(GSM458541)
MEL202. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029126(GSM416755)
143B. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.............................TGATGCCGACAAGAAGAT................................................................................................................................... 1811.001.00-----------------------------------------------------------1.00-------------------------------------------------------------------------------
...........................................................................................................CTCACAGCTCTCTCCCCTCAGCGTCC............................................. 261.000.00-----------------------------------1.00-------------------------------------------------------------------------------------------------------
......CACGACAGCACCGTCTGC.......................................................................................................................................................... 1811.001.00----------------------1.00--------------------------------------------------------------------------------------------------------------------
...............................................................................................................CAGCTCTCTCCCCTCAGCGTCGAG........................................... 241.000.00-------------------------------------------1.00-----------------------------------------------------------------------------------------------
..AAGCCACGACAGCACCGTCTGCCT........................................................................................................................................................ 2411.001.00----------------------------------------------------------------------------------------------------------------------------1.00--------------