ID: uc003slx.1
GENE: EIF3B(1)
chr7:2402080-2402329+


(3)
AGO2.ip
(19)
B-CELL
(3)
BRAIN
(10)
BREAST
(33)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(4)
LIVER
(2)
OTHER
(13)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTGGTTAGGATTTCCCTGTCACTTAGGAGCTCCCTGGCTGTGGATCTGTCCCCCGTGTGACTGCCTTAGGCTCGAGGCAGGAAGAGCAGCACAGATACTCCTGGCACCGAGGGCTTGTCCGTGGAGAGGGGTGGGGCGGACAGCGCATACCTGCCTAGCCTTACAGTGTGGGTATGTGCCAACGGCCCTCTCTCACTCAGGTATATTTTCCTGGAGTACGCGTCCCCTGCCCACGCTGTGGATGCTGTGA
....................................................................................................................................(((.((....((((((((((((((........)).))))))))))))...)).)))..............................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189786SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR029130(GSM416759)
DLD2. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR038856(GSM458539)
D11. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR038859(GSM458542)
MM386. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577590(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR189782SRR038863(GSM458546)
MM603. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR029127(GSM416756)
A549. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
TAX577453(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCT...............................................................................................24199.0027.006.0010.007.007.002.003.003.00-5.002.001.00-3.005.004.001.001.004.00--2.003.00--1.00-2.002.00----1.00-2.002.001.001.00--1.00-1.002.001.001.001.00---1.001.00-1.00-----1.001.00--1.001.001.00-1.00--------------1.00---1.00------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGC................................................................................................23127.0027.003.003.002.002.001.001.00---1.00-----2.001.00------3.00-----1.001.00-1.001.00--------1.00--------------------------1.00---------------1.00-1.00-----
...................................................................................................................................TGGGGCGGACAGCGCATACCTG.................................................................................................22125.0025.005.002.001.00-4.001.002.00--2.00--2.00---1.00------------1.00---1.00--------------1.00---------1.00-------------------1.00--------------
...................................................................................................................................TGGGGCGGACAGCGCATACCT..................................................................................................2119.009.00-------3.00-----------3.00----------1.00--------------------------------------------------1.00-1.00---------
............................................................................................................................................................AGCCTTACAGTGTGGGTATGTGCCAACGGCC...............................................................3115.005.00-----------5.00---------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCA...............................................................................................2414.0027.00----1.00---------1.00---------------------1.00-----------------------------------------------1.00--------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGA................................................................................................2314.0025.001.00-----1.00--------------------------------1.00----1.00------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGT................................................................................................2314.0025.00----1.00---1.00------------------------------1.00------------------------------1.00----------------------
...................................................................................................................................TGGGGCGGACAGCGCATACC...................................................................................................2014.004.00-------3.00---------------------------------------------------------------------1.00---------------
................................................................................................................................................................................................................................CCCTGCCCACGCTGTGGATGCT....2213.003.00----------------------3.00----------------------------------------------------------------------
..............................................................................................................................................................................................................................TCCCCTGCCCACGCTGTGGA........2012.002.00-----------------------------------------2.00---------------------------------------------------
...............................................................................................................................................................................................................TTCCTGGAGTACGCGTCCCCTGCC...................2412.002.00----------2.00----------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCCCAG............................................................................................272.000.00------------------2.00--------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGAA...............................................................................................2412.0025.001.00----1.00---------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TTCCTGGAGTACGCGTCCCCTGCCCACGC..............2912.002.00-------------------------2.00-------------------------------------------------------------------
.........................................................................................................ACCGAGGGCTTGTC...................................................................................................................................1441.251.25---0.75--------------------------------------------------------------------------------------0.250.25-
...........................................................................GGCAGGAAGAGCAGCACACCTT.........................................................................................................................................................221.000.00--------------------------------------------------------1.00------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCAT......................................................................................................1711.001.00---------------------------------------------------------------------------1.00-----------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCTA..............................................................................................2511.0027.00------------------------1.00--------------------------------------------------------------------
...................................................................AGGCTCGAGGCAGGAAGAGCAGCA...............................................................................................................................................................2411.001.00----------------1.00----------------------------------------------------------------------------
............................................................................................................................................................................................................ATTTTCCTGGAGTACG..............................1621.001.00-------------------------------------------------------1.00-------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCTTT.............................................................................................2611.0027.00-------------------------------------------------1.00-------------------------------------------
......................................................................................................................................................................................................................AGTACGCGTCCCCTGCCCACGCTGCGG.........271.000.00----------------------------------------------------1.00----------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCCGCC...............................................................................................2411.004.00------------------1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................................TCCCCTGCCCACGCTGTGGCTGC.....231.000.00-----------------------------------------------1.00---------------------------------------------
..................................................................................................................................GTGGGGCGGACAGCGCATACCTGCTA..............................................................................................261.000.00---------------1.00-----------------------------------------------------------------------------
....................................................................................................................................GGGGCGGACAGCGCATACCTGCT...............................................................................................2311.001.00--1.00------------------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCAGCT...............................................................................................2411.004.00-----1.00---------------------------------------------------------------------------------------
..........................................................................................................CCGAGGGCTTGTCCGCC...............................................................................................................................171.000.00------------------------------------------------------------------------1.00--------------------
...................................................................................................................................TGGGGCGGACAGCGCATACTTG.................................................................................................221.000.001.00--------------------------------------------------------------------------------------------
....................................................................................................................................GGGGCGGACAGCGCATACCTGC................................................................................................2211.001.00----------1.00----------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCCGCT...............................................................................................2411.004.00----------1.00----------------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTTA................................................................................................2311.009.00-------------------------------------------------------------1.00-------------------------------
..................................................................................................................................GTGGGGCGGACAGCGCATA.....................................................................................................1911.001.00--------------------1.00------------------------------------------------------------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCTGCTT..............................................................................................2511.0027.00-------------------------------------------------------------------------1.00-------------------
.........................................................................................................................................................................GGGTATGTGCCAACGGCCCTCTC..........................................................2311.001.00-----------------------------------------------------------------------1.00---------------------
...................................................................................................................................TGGGGCGGACAGCGCATACCCGC................................................................................................2311.004.00--------------------------------------------------------------------------------1.00------------
..........................................................................................................CCGAGGGCTTGTCC..................................................................................................................................1430.330.33----------------------------------------------------------------------------------------0.33----
...................................................................................................................................................................CAGTGTGGGTATGTG........................................................................1590.110.11--------------------------------------------------------------------------------------------0.11

Antisense strand
CTGGTTAGGATTTCCCTGTCACTTAGGAGCTCCCTGGCTGTGGATCTGTCCCCCGTGTGACTGCCTTAGGCTCGAGGCAGGAAGAGCAGCACAGATACTCCTGGCACCGAGGGCTTGTCCGTGGAGAGGGGTGGGGCGGACAGCGCATACCTGCCTAGCCTTACAGTGTGGGTATGTGCCAACGGCCCTCTCTCACTCAGGTATATTTTCCTGGAGTACGCGTCCCCTGCCCACGCTGTGGATGCTGTGA
....................................................................................................................................(((.((....((((((((((((((........)).))))))))))))...)).)))..............................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189786SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR029130(GSM416759)
DLD2. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR038856(GSM458539)
D11. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR038859(GSM458542)
MM386. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577590(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038858(GSM458541)
MEL202. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR189782SRR038863(GSM458546)
MM603. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR029127(GSM416756)
A549. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
TAX577453(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................................GCCTAGCCTTACAGTGTTT............................................................................... 192.000.00----------------------------2.00----------------------------------------------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGAGGT.............................................................................. 192.000.00--------------------------------------1.00-1.00----------------------------------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGGGC............................................................................... 181.000.00-------------------------------1.00-------------------------------------------------------------
...........................................................................................................................GAGAGGGGTGGGGCGGTCT............................................................................................................ 191.000.00------------------------------------------------------------------1.00--------------------------
........................................................................................................................................................GCCTAGCCTTACAGTGGA................................................................................ 181.000.00------------------------------------------------------1.00--------------------------------------
...........................................................................................................................GAGAGGGGTGGGGCGGGCG............................................................................................................ 191.000.00--------------------------------------------------------------1.00------------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGAGG............................................................................... 181.000.00--------------------------------------1.00------------------------------------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGGA................................................................................ 171.000.00-------------------------------------1.00-------------------------------------------------------
...............................................................................................................................................................................................................................CCCCTGCCCACGCTGTGGCCT...... 211.000.00----------------------------------------------------------------------------1.00----------------
.........................................................................................................................................................CCTAGCCTTACAGTGTGTC.............................................................................. 191.000.00--------------------------------------------------------------------------1.00------------------
.........................................................................................................................................................CCTAGCCTTACAGTGGG................................................................................ 171.000.00-------------------------------------------------------------------------------1.00-------------
........................................................................................................................................................GCCTAGCCTTACAGTGGAGC.............................................................................. 201.000.00--------------------------------------------------------------------1.00------------------------
.............................................CTGTCCCCCGTGTGAGGGG.......................................................................................................................................................................................... 191.000.00---------------------------------------------------------1.00-----------------------------------
.........................................................................................................................................................CCTAGCCTTACAGTGAGA............................................................................... 181.000.00-------------------------------1.00-------------------------------------------------------------
................................................................................................................GCTTGTCCGTGGAGA........................................................................................................................... 1530.330.33-----------------------------------------------------------------------------------------0.33---