ID: uc003mtz.4
GENE: WRNIP1(4)
chr6:2784358-2784607+


(3)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(3)
B-CELL 		(4)
BRAIN 		(6)
BREAST 		(25)
CELL-LINE 		(4)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CACCACACAGTAACCACTCTCAATATTTCTTGCATAAGTTCATGGGATCAGAGACTAGAGCTAAGTCAGGCTGTTTTGCTACATGGGATTGTTTTGGTCACCAAGTGTACAAGCAGTGGTGGTCTGTGGTCGCCTGCACATAGGCCAGGAGGACAGTGTGTGTCATGACTGAAACTCTCCTTTGTCTCTGTGTGTGGCAGGTCTGGCAGACCCGTCTGCGTTAACACAAGCGGTTGCTGCCTACCAAGGC
...................................................................................................................................(((.(((((((((...((((((.(((....((....))....))).))))))...))))))))))))....................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR189786SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191472(GSM715582)
120genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029125(GSM416754)
U2OS. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGC....................................................231114.00114.0038.009.0014.0011.003.003.006.005.004.003.003.00---3.001.001.00-2.00-2.00-------------------1.00-------1.00---1.00-----1.00--1.001.00---
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGG.....................................................22113.0013.0011.00-1.00-------------1.00-------------------------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCA...................................................2219.009.00--1.00--2.00---------------1.00----1.00--------------1.00--1.00------1.00---1.00----------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAGT.................................................2416.002.00--1.001.00---------1.00-1.00-------------------1.00------------------------1.00-----
.................................................................................................................................TCGCCTGCACATAGGCCAGGAGGA.................................................................................................2415.005.00-4.00---------------------------1.00------------------------------------
......................................................................................................................................TGCACATAGGCCAGGAGGACAGT.............................................................................................2314.004.00-4.00----------------------------------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGCA...................................................2413.003.00-----1.00-----1.00---------------------------------------------------1.00--
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGGCAG....................................................232.000.00-2.00----------------------------------------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGC....................................................2112.002.001.00---------------------------------1.00-------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAG..................................................2312.002.00-----1.00---------------------------------1.00--------------------------
..................................................................................ATGGGATTGTTTTGGTCACCA...................................................................................................................................................2112.002.00---------------------------1.00-----1.00--------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGT....................................................2312.0013.001.00----------------------------------------------------------------1.00
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAT..................................................2312.009.00-----------------------1.00----------------------1.00-------------------
.................................................................................................................................TCGCCTGCACATAGGCCAGGAG...................................................................................................2212.002.00----2.00-------------------------------------------------------------
....................................................................................................................................................................................TTTGTCTCTGTGTGTGGCAGT.................................................212.000.00-----------------2.00------------------------------------------------
......................................................................................................................................TGCACATAGGCCAGGAGGACAGTTAGA.........................................................................................2712.004.00--2.00---------------------------------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGGGGC....................................................232.000.002.00-----------------------------------------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCATT.................................................2412.009.00-2.00----------------------------------------------------------------
................................................................................................................................................................................................................................CACAAGCGGTTGCTGCCTA.......1912.002.00----2.00-------------------------------------------------------------
...........................................................................................................................................................GTGTGTGTCATGACTGAAAC...........................................................................2011.001.00-------------------------1.00----------------------------------------
...................................................................................................................GTGGTGGTCTGTGGTCGC.....................................................................................................................1811.001.00-------------1.00----------------------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTG......................................................2111.001.00--1.00---------------------------------------------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAGTT................................................2511.002.00-------------1.00----------------------------------------------------
.............................................................................................................................................................................ACTCTCCTTTGTCTCTGTGTGTGGC....................................................2511.001.00-------------------------------------------1.00----------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAGG.................................................2411.001.00--1.00---------------------------------------------------------------
................................................................................................................................................................................CTCCTTTGTCTCTGTGTGTGG.....................................................2111.001.00------------------------------1.00-----------------------------------
...................................................................................................................................................................................CTTTGTCTCTGTGTGTGGCAGA.................................................221.000.00-----------1.00------------------------------------------------------
.........................................................................................................................................................................................................TCTGGCAGACCCGTCTG................................1711.001.00------------------------------------1.00-----------------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTTGC....................................................211.000.001.00-----------------------------------------------------------------
.....................................................................................................CAAGTGTACAAGCAGAATC..................................................................................................................................191.000.00-----------------------------------------------1.00------------------
..................................................GAGACTAGAGCTAAGTCAGGCTGTT...............................................................................................................................................................................2511.001.00--------------------------------------1.00---------------------------
...................................AAGTTCATGGGATCAGAGACTAG................................................................................................................................................................................................2311.001.00-------------------------------------1.00----------------------------
..................................................................................................................................................AGGAGGACAGTGTGTGTGTGC...................................................................................211.000.00--------------------------------1.00---------------------------------
................................................................................................................................................................................CTCCTTTGTCTCTGTGTGTGGCA...................................................2311.001.00--------1.00---------------------------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGCAT..................................................2511.003.00---------1.00--------------------------------------------------------
.......................................................................................................AGTGTACAAGCAGTGGT..................................................................................................................................1711.001.00------------------------------------------1.00-----------------------
.................................................................................................................................................................................TCCTTTGTCTCTGTGTGTGGCAGTC................................................2511.002.00----------------------1.00-------------------------------------------
.................................................................................................................................................................................................GTGGCAGGTCTGGCAGACC......................................1911.001.00-------------------1.00----------------------------------------------
..................................................................................................................................................................................CCTTTGTCTCTGTGTGTGGCAT..................................................221.000.00-------------------------------1.00----------------------------------
............................................................................TGCTACATGGGATTGTTTTGGTCACCAA..................................................................................................................................................2811.001.00-------------------------------------------------1.00----------------
....................................AGTTCATGGGATCAGAGACTAGA...............................................................................................................................................................................................2311.001.00------------------------------------------------------1.00-----------
..................................................................................................................................CGCCTGCACATAGGCCAGGAGGATACT.............................................................................................2711.001.00--------------------------------------------------------1.00---------
...................................................................................................................................................................................CTTTGTCTCTGTGTGTGGCAGT.................................................221.000.00------------------------1.00-----------------------------------------
...............................................................................................................................................................................TCTCCTTTGTCTCTGTGTGTGGCTT..................................................2511.00114.00----------------------------1.00-------------------------------------
....................................................................................................................................................................................TTTGTCTCTGTGTGTGGCA...................................................1911.001.00----------1.00-------------------------------------------------------
..................................................GAGACTAGAGCTAAGTCAGG....................................................................................................................................................................................2011.001.00---------------------------------------------1.00--------------------
....................................................................................................................................................................................................................................AGCGGTTGCTGCCTACCAA...1911.001.00--------------------------------------------------1.00---------------
..................................................................................................................................................AGGAGGACAGTGTGTGTCATG...................................................................................2111.001.00---------------------------------------------------------1.00--------
..................................................................................................................................CGCCTGCACATAGGCCAGGAGGA.................................................................................................2311.001.00-----------------------------------------------------1.00------------
.........................................................GAGCTAAGTCAGGCTGTTTTGCTA.........................................................................................................................................................................2411.001.00-----------------------------------------------------------1.00------
................................................................................................................................................................................CTCCTTTGTCTCTGTGTGTGGC....................................................2211.001.00-------------------1.00----------------------------------------------
.................................................................................................................................TCGCCTGCACATAGGCCAGGAGG..................................................................................................2311.001.00----------------------------------------------------------------1.00-
..................................................................................................................................................................................CCTTTGTCTCTGTGTGTGGCAGT.................................................231.000.00-----------1.00------------------------------------------------------

Antisense strand
CACCACACAGTAACCACTCTCAATATTTCTTGCATAAGTTCATGGGATCAGAGACTAGAGCTAAGTCAGGCTGTTTTGCTACATGGGATTGTTTTGGTCACCAAGTGTACAAGCAGTGGTGGTCTGTGGTCGCCTGCACATAGGCCAGGAGGACAGTGTGTGTCATGACTGAAACTCTCCTTTGTCTCTGTGTGTGGCAGGTCTGGCAGACCCGTCTGCGTTAACACAAGCGGTTGCTGCCTACCAAGGC
...................................................................................................................................(((.(((((((((...((((((.(((....((....))....))).))))))...))))))))))))....................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR189786SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR191472(GSM715582)
120genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029125(GSM416754)
U2OS. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
.........................................................................TTTTGCTACATGGGATTGTT............................................................................................................................................................. 201.000.00------------1.00-----------------------------------------------------
.........................................................................TTTTGCTACATGGGATTGTTAG........................................................................................................................................................... 221.000.00------------1.00-----------------------------------------------------
...........................................................................TTGCTACATGGGATTGTTT............................................................................................................................................................ 1911.001.00------------1.00-----------------------------------------------------