ID: uc003dbw.10
GENE: RRP9(10)
chr3:51971553-51971734-


(2)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(2)
BRAIN
(1)
BREAST
(15)
CELL-LINE
(1)
CERVIX
(4)
HELA
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(10)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
CCCGTGCATTTGAGGAGGACCAGGTGGCGGGGCGCCTGAAGGAGGATGTGGTAAGTGTGGAGGGAGAGTTGGGGGAGGACGGGGGTGGAGCTGATCTGCTCCCAGGGTCTCATCCATCTCTTCTCCATGCAGCTTGAGCAGAGGGGCAGGCTGCAGAAGTTGGTGGCAAAAGAGGTGAGTGG
......................................................(((((((.((((((.(((..((((..(((((..((.....))..)))))....))))..))).)))))))))))))....................................................
..............................................47...................................................................................132................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189786SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787GSM416733(GSM416733)
HEK293. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
...............................................................................................................ATCCATCTCTTCTCCATGCAGT.................................................22115.004.0010.001.00-------------1.00-------1.00-1.00-------1.00---------
...............................................................................................................ATCCATCTCTTCTCCATGCAGA.................................................2218.004.002.00---4.00------2.00-------------------------------
...................................................TAAGTGTGGAGGGAGAGTTG...............................................................................................................2015.005.00--5.00----------------------------------------
...............................................................................................................ATCCATCTCTTCTCCATGCAG..................................................2114.004.00-------2.00------1.00-1.00--------------------------
.....................................................AGTGTGGAGGGAGAGTTGGGGGA..........................................................................................................2314.004.004.00------------------------------------------
...........................................................................................................TCTCATCCATCTCTTCTCCATG.....................................................2213.003.00-3.00-----------------------------------------
...................................................TAAGTGTGGAGGGAGAGTTGGGGGAGGACGGG...................................................................................................3213.003.00---3.00---------------------------------------
..............................................................................................................CATCCATCTCTTCTCCATG.....................................................1912.002.00---------------------------1.00----1.00----------
................................................................................................................TCCATCTCTTCTCCATGCAGTA................................................222.000.00----------2.00--------------------------------
...................................................TAAGTGTGGAGGGAGAGTTGGGGGAGGACGGGGGTGGAGCTGATCTGCTCCCAGGGTCTCATCCATCTCTTCTCCATGCTTTT................................................832.000.00--------2.00----------------------------------
...........................................................................................................TCTCATCCATCTCTTCTCCATGCAGTTT...............................................282.000.00-2.00-----------------------------------------
...................................................TAAGTGTGGAGGGAGAGTTGG..............................................................................................................2112.002.00--1.00------1.00---------------------------------
................................................................................................................TCCATCTCTTCTCCATGCAGTTT...............................................231.000.00-1.00-----------------------------------------
............................................................................................................CTCATCCATCTCTTCTCCATGCAGAA................................................261.000.00----------------------1.00--------------------
...........................................................................................................TCTCATCCATCTCTTCTCCATGCAGT.................................................261.000.00-----1.00-------------------------------------
...........................................................................................................TCTCATCCATCTCTTCTCCATGCAATT................................................271.000.00-1.00-----------------------------------------
................................................................................GGGGGTGGAGCTGATTGG....................................................................................181.000.00------1.00------------------------------------
...................................................TAAGTGTGGAGGGAGAGTTGT..............................................................................................................2111.005.00--1.00----------------------------------------
.............................................................................................................TCATCCATCTCTTCTCCATGCAGT.................................................241.000.00-----1.00-------------------------------------
....................................................................TTGGGGGAGGACGGGGTTTG..............................................................................................201.000.00--------------------1.00----------------------
...................................................TAAGTGTGGAGGGAGAGTT................................................................................................................1911.001.00--1.00----------------------------------------
...................................................TAAGTGTGGAGGGAGAGTTGGGGGA..........................................................................................................2511.001.00---1.00---------------------------------------
...............................................................................................................ATCCATCTCTTCTCCATGCA...................................................2011.001.00------------1.00------------------------------
...................................................TAAGTGTGGAGGGAGAGTTGGG.............................................................................................................2211.001.00---------1.00---------------------------------
..............................................................................................................CATCCATCTCTTCTCCATGCAGT.................................................231.000.00------------------------------1.00------------
...................................................TAAGTGTGGAGGGAGAGTTGGGGGAGGACGG....................................................................................................3111.001.00---1.00---------------------------------------
...................................................................GTTGGGGGAGGACGGGGGTGGAGCTCTG.......................................................................................281.000.00------------------1.00------------------------
................................................................................GGGGGTGGAGCTGATCGGTA..................................................................................201.000.00------1.00------------------------------------
..........................................................................................................GTCTCATCCATCTCTTCTCCATGCAGT.................................................271.000.00--------------------------1.00----------------
...........................CGGGGCGCCTGAAGGAG..........................................................................................................................................1711.001.00----------------------------1.00--------------
..................................................GTAAGTGTGGAGGGAGAGTTGGGGGA..........................................................................................................2611.001.00------------------------1.00------------------
............................................................................................................................................GAGGGGCAGGCTGCAGAAGTTGGTG.................2511.001.00-------------1.00-----------------------------
...................................................TAAGTGTGGAGGGAGAGTTGGGGGAGG........................................................................................................2711.001.00-----1.00-------------------------------------
.................................................................................................................................................GCAGGCTGCAGAAGTTGGTGG................2111.001.00---------------------1.00---------------------
......................................................................GGGGGAGGACGGGGGTCCAG............................................................................................201.000.00-1.00-----------------------------------------
.................................................................GAGTTGGGGGAGGACGGG...................................................................................................1830.670.67------------------------------------0.330.33-----
..................................................GTAAGTGTGGAGGGAGAG..................................................................................................................1820.500.50----------------------------------0.50--------
..................................................................................................................CATCTCTTCTCCATGCAG..................................................1820.500.50-----------------------------------0.50-------
....................................................................................................................................................GGCTGCAGAAGTTGGT..................1630.330.33--------------------------------------0.33----
.................................................................GAGTTGGGGGAGGACG.....................................................................................................1640.250.25----------------------------------------0.25--
..................................................................AGTTGGGGGAGGACGGG...................................................................................................1740.250.25---------------------------------------0.25---
....................CAGGTGGCGGGGCG....................................................................................................................................................1470.140.14------------------------------------0.14------
...................................................................GTTGGGGGAGGACGGG...................................................................................................1680.120.12-----------------------------------------0.12-
...................................................................GTTGGGGGAGGACGGGCTGC...............................................................................................2080.120.12------------------------------------------0.12

Antisense strand
CCCGTGCATTTGAGGAGGACCAGGTGGCGGGGCGCCTGAAGGAGGATGTGGTAAGTGTGGAGGGAGAGTTGGGGGAGGACGGGGGTGGAGCTGATCTGCTCCCAGGGTCTCATCCATCTCTTCTCCATGCAGCTTGAGCAGAGGGGCAGGCTGCAGAAGTTGGTGGCAAAAGAGGTGAGTGG
......................................................(((((((.((((((.(((..((((..(((((..((.....))..)))))....))))..))).)))))))))))))....................................................
..............................................47...................................................................................132................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189786SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787GSM416733(GSM416733)
HEK293. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
......................................................................GGGGGAGGACGGGGGCCC.............................................................................................. 182.000.00-----------------1.00-1.00-----------------------
.....................................................................TGGGGGAGGACGGGGCGGC.............................................................................................. 191.000.00-------------------------------1.00-----------
......................................................................GGGGGAGGACGGGGGTCCC............................................................................................. 191.000.00-----------------------------1.00-------------