ID: uc003bdd.4
GENE: ARFGAP3(4)
chr22:43206901-43207150-


(1)
AGO2.ip 		(6)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(8)
HEART 		(2)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGGGCAAGGTTGAACACAGGTACTTGAAAGGCCTTGGAAATGACACACCTCGTGTCTGCTCCTGTCTCATTGGCTAGACCTAGTTATGTGACTGCCATTAACTTCAAGGAGGCATCCCCCACATCTGTGGAAGTGAGAGAGCCCAGGACGAGTGTCAACAAGGACCTCCAAAGTCACTGTTGTACTCTTGCTCCTACAGTTACTTTGACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCTCTAGCTGGG
.................................................................................................................................................((((((((.(((((((..(((.......)))..))))).)).)))).))))......................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR038858(GSM458541)
MEL202. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................CAGGACGAGTGTCAACAAGGAC....................................................................................22145.0045.0039.001.00-----2.00-2.00-------------------------------------------------1.00-------
................................................................................................................................................CAGGACGAGTGTCAACAAGGA.....................................................................................21118.0018.008.002.00--2.00-----1.00---------------1.00--1.00-----1.00---------1.00--------------1.00------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTACA...................................................2318.008.005.00--2.00---------------------------------1.00-----------------------------
..............................................................................................................................................CCCAGGACGAGTGTCAACAAGG......................................................................................2216.006.006.00------------------------------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGA.....................................................................................2216.006.001.001.00----------------------1.00-------1.00----------1.00----------1.00------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGAA....................................................................................2215.0018.00---1.00--2.00---------------------------------------1.00--------------1.00-----
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTA.....................................................2314.004.00-----------1.00-------------1.00-------------1.00------------1.00--------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGACA...................................................................................2314.0045.003.00-------------------------------------------------1.00----------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAG.......................................................................................2013.003.00-----3.00-------------------------------------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAG.......................................................................................1913.003.00--3.00----------------------------------------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTACA...................................................2412.002.00----------------------------------1.00-1.00------------------------------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTAC....................................................2212.002.00----------------------------1.00--------------------1.00-----------------
.............................................................................................................................................................................................................TTGACGAGCCAGTGGA.............................1612.002.00--------2.00----------------------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGAAAG..................................................................................2511.006.00-------------------------------1.00-----------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGG......................................................................................2011.001.00---------------------------1.00---------------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTACAGG.................................................261.000.00--------------1.00----------------------------------------------------
.........................................................................................................................ACATCTGTGGAAGTGTGGT..............................................................................................................191.000.00--------------------------------------------------------------1.00----
.........................................................................................................................................................................................................TACTTTGACGAGCCAGTGGAGTTAA........................2511.001.00-----------------------------------------1.00-------------------------
...................................................................................................................................................................................................................................GAGCAGTTCTTTCTCTAG.....1811.001.00----------------------------------------1.00--------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGG......................................................................................2111.001.00-----------------------------------------------------1.00-------------
...............................................................................................................................................................................................................GACGAGCCAGTGGAGTTA.........................1811.001.00--------------------------------------------------------1.00----------
..........................................................................................................................................................................................................................GGAGTTAAGGAGCAGT................1611.001.00---------------------------------------------------------1.00---------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCT......................................................2011.001.00------------1.00------------------------------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCT......................................................2111.001.00---------------------------------1.00---------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAAGGACT...................................................................................2311.0045.00----1.00--------------------------------------------------------------
..............................................................................................................................................................ACAAGGACCTCCAAAGTCACTG......................................................................2211.001.00------------------------------1.00------------------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTTT....................................................2411.001.00------------------------------------------------1.00------------------
................................................................................................................................................................................ACTGTTGTACTCTTGCTCCTACAGC.................................................251.000.001.00------------------------------------------------------------------
................................................................................................................................................CAGGACGAGTGTCAACAA........................................................................................1811.001.00------------------1.00------------------------------------------------
........................................................................................................................................................................................................................GTGGAGTTAAGGAGCAGTT...............1911.001.00--------------------------------------------1.00----------------------
........................................................................................................................................................................CCAAAGTCACTGTTGTACTCTTGCTCCTACAG..................................................3211.001.00----------------1.00--------------------------------------------------
...................................................CGTGTCTGCTCCTGTCGCC....................................................................................................................................................................................191.000.00--------------------1.00----------------------------------------------
.....................................................................................................................................................................CCTCCAAAGTCACTGTTGTA.................................................................2011.001.00---------------------1.00---------------------------------------------
................................................................................................................................................................................................................ACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCT.........3311.001.00------------------------------------------1.00------------------------
................................................................................................................................................................................................................ACGAGCCAGTGGAGTTAAG.......................1911.001.00---------------------------------------------------1.00---------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCTAA....................................................2411.004.00---------------1.00---------------------------------------------------
.......................................AATGACACACCTCGTTG..................................................................................................................................................................................................171.000.00--1.00----------------------------------------------------------------
......................................................................................................................................................................................................................CAGTGGAGTTAAGGAGC...................1711.001.00-------------------------------------------------------1.00-----------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTA.....................................................2211.001.00-----------------1.00-------------------------------------------------
..............................................................................................................................................................................TCACTGTTGTACTCTTGCTCCT......................................................2211.001.00-----------------------1.00-------------------------------------------
...............................................................................................................................................CCAGGACGAGTGTCAACAAGGAC....................................................................................2311.001.00--------------------------------------1.00----------------------------
......................................................................................................................................................................................................................CAGTGGAGTTAAGGAGCA..................1811.001.00----------------------------------------------------------1.00--------
.............................................................................................................................................................................................................TTGACGAGCCAGTGGAGTTA.........................2011.001.00-----------------------------------------------1.00-------------------
...............................................................................................................................................................................CACTGTTGTACTCTTGCTCCTAC....................................................2311.001.00-------------1.00-----------------------------------------------------
...............................................................................................................................................................................CACTGTTGTACTCTTG...........................................................1630.330.33----------------------------------------------------------------0.33--
...........TGAACACAGGTACTT................................................................................................................................................................................................................................1560.330.33---------------------------------------------------------------0.33---
..........TTGAACACAGGTACT.................................................................................................................................................................................................................................1580.120.12-----------------------------------------------------------------0.12-

Antisense strand
CTGGGCAAGGTTGAACACAGGTACTTGAAAGGCCTTGGAAATGACACACCTCGTGTCTGCTCCTGTCTCATTGGCTAGACCTAGTTATGTGACTGCCATTAACTTCAAGGAGGCATCCCCCACATCTGTGGAAGTGAGAGAGCCCAGGACGAGTGTCAACAAGGACCTCCAAAGTCACTGTTGTACTCTTGCTCCTACAGTTACTTTGACGAGCCAGTGGAGTTAAGGAGCAGTTCTTTCTCTAGCTGGG
.................................................................................................................................................((((((((.(((((((..(((.......)))..))))).)).)))).))))......................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR038858(GSM458541)
MEL202. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................................................................................TCCAAAGTCACTGTTCAG................................................................. 181.000.00----------------------1.00--------------------------------------------
..............................................................................................................AGGCATCCCCCACATTTT.......................................................................................................................... 181.000.00-------------------1.00-----------------------------------------------
........................................................CTGCTCCTGTCTCATT.................................................................................................................................................................................. 1690.110.11------------------------------------------------------------------0.11