ID: uc003afq.9
GENE: THOC5(9)
chr22:29924117-29924312-


(1)
AGO1.ip
(2)
AGO2.ip
(9)
B-CELL
(2)
BRAIN
(2)
BREAST
(20)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(4)
HEART
(1)
HELA
(4)
LIVER
(1)
OTHER
(1)
RRP40.ip
(9)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
AAGGTGCTGCTGGGAGGGGAGTCTGACAACCCAGCTAGCTGAAGCAGCAGGTGCCAGGCAGTAGGGCTGAGGCCTGGCTGGTTGGGAGAGGGAAGGGGAGATTGCTATGACTGATGCTCATCAGCTTGGCACTTTCCTTTGTCCAGAAGCGCCGGAGACCCACACTGGGGGTTCAGTTGGACGACAAACGCAAGGA
.........................................................................................((..((((((((.(((((...(((((....)))))..))))).))))))))..))....................................................
....................................................................................85...........................................................146................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR038856(GSM458539)
D11. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189783SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR040036(GSM532921)
G243N. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040037(GSM532922)
G243T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038863(GSM458546)
MM603. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.........................................................................................GGGAAGGGGAGATTGCTATGACT....................................................................................23117.0017.001.00--1.00------1.001.00-1.002.00---1.00----1.00-----1.00----------1.00-----1.00---1.00-1.001.00-1.00--1.00---
........................................................................................AGGGAAGGGGAGATTGCTAT........................................................................................2015.005.003.002.00------------------------------------------------------------
........................................................................................AGGGAAGGGGAGATTGCTATGACT....................................................................................2415.005.00------1.001.00---------1.00------1.00------------------1.00------------------
.........................................................................................GGGAAGGGGAGATTGCTATGAC.....................................................................................2214.004.00------1.00------------1.00-----1.00---------------1.00--------------------
........................................................................................AGGGAAGGGGAGATTGCTATGA......................................................................................2214.004.00---1.00----------------1.00-1.00-----1.00---------------------------------
............................................................................................................................CTTGGCACTTTCCTTTGTCCAG..................................................2213.003.00----1.00----2.00----------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATG.......................................................................................2013.003.00-3.00------------------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATGACA....................................................................................2312.004.00-----------1.00--------------------------------------------1.00-----
............................................................................................................................CTTGGCACTTTCCTTTGTCCAGT.................................................2312.003.00----------------1.00-------------------1.00-------------------------
.........................................................................................GGGAAGGGGAGATTGCTATGA......................................................................................2112.002.00-------1.00------------------1.00-----------------------------------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGACA..........2812.002.00-----2.00--------------------------------------------------------
....................................................................................................................................................................CTGGGGGTTCAGTTGGACGACAAACGC.....2711.001.00--------1.00-----------------------------------------------------
..........................................................................................................................................................................GTTCAGTTGGACGACAAACGCAAGGA2611.001.00---------------1.00----------------------------------------------
.................................................................................................................................................................ACACTGGGGGTTCAGTTGGACGA............2311.001.00----------------------------------1.00---------------------------
....................................................................................................................................................................CTGGGGGTTCAGTTGGAC..............1811.001.00---------------------1.00----------------------------------------
......................................................................................................................................................................GGGGGTTCAGTTGGACGA............1811.001.00-------------1.00------------------------------------------------
............................................CAGCAGGTGCCAGGCCATG.....................................................................................................................................191.000.00-----------------------------------------------1.00--------------
............................................................................................................................................................................TCAGTTGGACGACAAACG......1811.001.00------------1.00-------------------------------------------------
............................................................................................................................CTTGGCACTTTCCTTTGTCCATT.................................................231.000.00-------------------------------1.00------------------------------
.......................................................AGGCAGTAGGGCTGAGGCCTGG.......................................................................................................................2211.001.00-----------------------------------------------------------1.00--
........................................................................................AGGGAAGGGGAGATTGCTATGAGT....................................................................................2411.004.00---------------------------------------------------------1.00----
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGA...............2311.001.00---------------------------1.00----------------------------------
.......................TGACAACCCAGCTAGCTGAAGCAGCAGA.................................................................................................................................................281.000.00--------1.00-----------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTATGACAA...................................................................................2411.004.00---------------------------------1.00----------------------------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGACAAACGC.....3311.001.00---------------------------------------------------1.00----------
..................................................................................................................................................................CACTGGGGGTTCAGTTGGACGACAAACGCAAGGA3411.001.00----1.00---------------------------------------------------------
.........................................................................................GGGAAGGGGAGATTGCTAT........................................................................................1911.001.001.00-------------------------------------------------------------
................................................................................................................................................................CACACTGGGGGTTCAGTTGG................2011.001.00-------------------------------------1.00------------------------
..................................................................................................................................................................CACTGGGGGTTCAGTGG.................171.000.00------------------------------------------------------1.00-------
...................................................................................................................................................AGCGCCGGAGACCCAGGC...............................181.000.00--------------------------------------1.00-----------------------
..........................................AGCAGCAGGTGCCAGGCAGAGGG...................................................................................................................................231.000.00------------------------------------------------1.00-------------
..............................................................................................................................................................CCCACACTGGGGGTTCAGTTGGACGAC...........2711.001.00------------------------------1.00-------------------------------
..................................................................................................................................................AAGCGCCGGAGACCCACACTGGGGGC........................261.000.00------------------------------------------1.00-------------------
............................................................................................................................CTTGGCACTTTCCTTTG.......................................................1711.001.00--1.00-----------------------------------------------------------
..................................................................................................................................................................CACTGGGGGTTCAGTTGGACGAC...........2311.001.00----------1.00---------------------------------------------------
........................................................................................AGGGAAGGGGAGATTGCTATGAC.....................................................................................2311.001.00---------------------------------------------1.00----------------
...........................................................................................................................................................................TTCAGTTGGACGACAAACTCTG...221.000.00------------------------------------------------------------1.00-
.........................................................................................................................................................................GGTTCAGTTGGACGACAA.........1811.001.00------------1.00-------------------------------------------------
.................................GCTAGCTGAAGCAGCAG..................................................................................................................................................1711.001.00-------------------------------------------------1.00------------

Antisense strand
AAGGTGCTGCTGGGAGGGGAGTCTGACAACCCAGCTAGCTGAAGCAGCAGGTGCCAGGCAGTAGGGCTGAGGCCTGGCTGGTTGGGAGAGGGAAGGGGAGATTGCTATGACTGATGCTCATCAGCTTGGCACTTTCCTTTGTCCAGAAGCGCCGGAGACCCACACTGGGGGTTCAGTTGGACGACAAACGCAAGGA
.........................................................................................((..((((((((.(((((...(((((....)))))..))))).))))))))..))....................................................
....................................................................................85...........................................................146................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR038856(GSM458539)
D11. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189783SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR040036(GSM532921)
G243N. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040037(GSM532922)
G243T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038863(GSM458546)
MM603. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR040015(GSM532900)
G623T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...............................................................................................................................................................................GTTGGACGACAAACGCGGTT. 201.000.00--------------------------------------------1.00-----------------
................................................................................................................................................................................TTGGACGACAAACGC..... 1511.001.00--------------------------------1.00-----------------------------
...........GGGAGGGGAGTCTGAGTT....................................................................................................................................................................... 181.000.00--1.00-----------------------------------------------------------
.............................................AGCAGGTGCCAGGCAGTCAC................................................................................................................................... 201.000.00-----------------------------------1.00--------------------------
...........................AACCCAGCTAGCTGATGTA...................................................................................................................................................... 191.000.00---------------------------------------1.00----------------------
..................................................................................................................................................................................GGACGACAAACG...... 1270.290.29-------------------------------------------------------------0.29
..........TGGGAGGGGAGTCTGA.......................................................................................................................................................................... 1640.250.25--0.25-----------------------------------------------------------
.............................................................................................................................................................................CAGTTGGACGACA.......... 1380.120.12---------------0.12----------------------------------------------